Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001343

Physical Location & Seq

Genomic Coordinates Forward (+)

33395497 .. 33396986

Gene Structure 1490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024238

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGTTAAATCAAAGAAAGTCCATCTTCAGTTCTTTGCTTTCACTCTTTTTCTTCTGTCCTGGCACCCCATCAAACCCGTAAGAGGCGAAGGAGTGGAAGAAATAGGGTATGATTATAGGCAAGGGAGCCTCAAGGGACCAGAGCACTGGGGAGAGCTCAACGAAGAATTGGAGGAATGCAAAGATGGAAAATTACAATCGCCAATAGATTTGTTCGATTCGAATGCTAGAAAAGCAATCTCAAGAGTAGATGATCTTAACATGAACTATAAGCCTTCAAAAGCAACTATGAAGCATGAACACTATGCTATTTCGATTGAATGGGAGGGTGATGCTGGATCAATTCAAATAAATGGCAATGATTACTTGCTCAAAAGATGTCATTGGCACAGATCCTCTGAACATTTCATTAATGGCAGAAGGTTTCTCTTTCTCTTTGCTTCTCTGTTTGTAAAATCCAAAATACTTCTTCAAATATGTCTAAACAGAGTTCTTTCTATCAGTTATGATTTGGAATTGCACATGGTTCACCAAAGCCAGAACAACGATATAGCTGTAGTCGCATTCCTATACCAAAGTGGCAATCCCGATCCTTTCCTGTCAAAGATAAGCAACGATGTATCCTCCCTAAGTGGTACAAAGGAGGCACGCTTGGGAGTGATTGATCCAAGTTTAATAAAATGGCCAAGCTCACGATTTTATAGATATATTGGCTCACTCACGACCCCTCCTTGCACTGAAGGAGTTATTTGGAGCGTAAACGAAGAGGTACGTTCTGTTTCAAAAGAACAGCTGAGGCTAATTGAACAAGTTGATCGTGGGATGAATGCAAGACCATTACAGCCTCTCAACAATCGAGACATCGTGCTTTTTGGTCCGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

295

Amino Acids

33.71

Weight (kDa)

7.15

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	45 - 142	1.1e-07	Eukaryotic-type carbonic anhydrase
Carb_anhydrase	PF00194	167 - 289	7.1e-20	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001343)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16730 FvH4_6g16740 FvH4_6g16840 FvH4_6g16850
malus_domestica	MD04G1089400.v1.1 MD04G1089500.v1.1 MD12G1107800.v1.1 MD12G1108000.v1.1 MD12G1108100.v1.1
prunus_persica	Prupe.7G126200_v2.0.a1 Prupe.7G126300_v2.0.a1 Prupe.7G126400_v2.0.a1 Prupe.7G126500_v2.0.a1
pyrus_communis	pycom12g10780 pycom12g10800
rosa_chinensis	RchiOBHm_Chr3g0470661 RchiOBHm_Chr3g0470681 RchiOBHm_Chr3g0470851 RchiOBHm_Chr3g0470871
rosa_laevigata	RLG00000024238 RLG00000024240 RLG00000024248 RLG00000024249
rosa_multiflora	Rmu_co8349665.1_g000001 Rmu_sc0000867.1_g000003 Rmu_sc0002790.1_g000026
rosa_roxburghii	Rroxscaffold_6G00410460 Rroxscaffold_6G00410480 Rroxscaffold_6G00410610 Rroxscaffold_6G00410620
rosa_rugosa	Rorug03G0111500 Rorug03G0111600 Rorug03G0111600 Rorug03G0111700 Rorug03G0111900 Rorug03G0113200
rosa_samantha	Rh3AG161300 Rh3AG161600 Rh3BG185800 Rh3BG186100 Rh3BG188000 Rh3BG188200 Rh3CG176100 Rh3CG176500 Rh3CG178000 Rh3CG178200 Rh3DG187700 Rh3DG187800 Rh3DG189000 Rh3DG189100
rosa_wichuraiana	Rw0G004610 Rw3G015240 Rw3G015340 Rw3G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	63
AciI	CCGC	1 cut(s)	878
AclWI	GGATC	4 cut(s)	346, 387, 584, 659
AcoI	YGGCCR	1 cut(s)	683
AcuI	CTGAAG	2 cut(s)	11, 759
AfaI	GTAC	2 cut(s)	637, 771
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	6 cut(s)	279, 320, 347, 473, 783, 806
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	4 cut(s)	157, 554, 690, 793
AluI	AGCT	4 cut(s)	157, 554, 690, 793
Alw21I	GWGCWC	2 cut(s)	147, 159
Alw26I	GTCTC	1 cut(s)	852
AlwI	GGATC	4 cut(s)	346, 387, 584, 659
AoxI	GGCC	1 cut(s)	683
AseI	ATTAAT	1 cut(s)	411
AspS9I	GGNCC	2 cut(s)	137, 875
AsuHPI	GGTGA	2 cut(s)	341, 521
AsuII	TTCGAA	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	137, 875
BalI	TGGCCA	1 cut(s)	685
BanI	GGYRCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	2 cut(s)	147, 159
BbvCI	CCTCAGC	1 cut(s)	794
BccI	CCATC	3 cut(s)	30, 77, 179
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	1 cut(s)	61
BciVI	GTATCC	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	852
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	555
BfuI	GTATCC	1 cut(s)	631
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	2 cut(s)	137, 875
BmgT120I	GGNCC	2 cut(s)	137, 875
BmiI	GGNNCC	3 cut(s)	65, 128, 138
BmrFI	CCNGG	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	322
BmuI	ACTGGG	1 cut(s)	157
Bpu10I	CCTNAGC	1 cut(s)	794
Bpu14I	TTCGAA	1 cut(s)	221
BpuEI	CTTGAG	2 cut(s)	116, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	712, 742
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	828
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	785
BseNI	ACTGG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	685
BshNI	GGYRCC	1 cut(s)	63
BsiHKAI	GWGCWC	2 cut(s)	147, 159
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	852
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	4 cut(s)	182, 229, 563, 832
BsnI	GGCC	1 cut(s)	685
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	147, 159
Bsp143I	GATC	6 cut(s)	253, 338, 392, 589, 664, 814
BspACI	CCGC	1 cut(s)	878
BspANI	GGCC	1 cut(s)	685
BspCNI	CTCAG	1 cut(s)	786
BspLI	GGNNCC	3 cut(s)	65, 128, 138
BspPI	GGATC	4 cut(s)	346, 387, 584, 659
BspT104I	TTCGAA	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	6 cut(s)	253, 338, 392, 589, 664, 814
Bst2UI	CCWGG	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	759
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	649
BstDEI	CTNAG	2 cut(s)	629, 794
BstF5I	GGATG	1 cut(s)	828
BstKTI	GATC	6 cut(s)	256, 341, 395, 592, 667, 817
BstMAI	GTCTC	1 cut(s)	852
BstMBI	GATC	6 cut(s)	253, 338, 392, 589, 664, 814
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 560
BstNI	CCWGG	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	392
BstXI	CCANNNNNNTGG	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	685
BtsCI	GGATG	1 cut(s)	828
BtsIMutI	CAGTG	2 cut(s)	145, 735
Cac8I	GCNNGC	1 cut(s)	649
Cfr13I	GGNCC	2 cut(s)	137, 875
Csp6I	GTAC	2 cut(s)	636, 770
CviAII	CATG	3 cut(s)	262, 296, 523
CviQI	GTAC	2 cut(s)	636, 770
DdeI	CTNAG	2 cut(s)	629, 794
DpnI	GATC	6 cut(s)	255, 340, 394, 591, 666, 816
DpnII	GATC	6 cut(s)	253, 338, 392, 589, 664, 814
EaeI	YGGCCR	1 cut(s)	683
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	2 cut(s)	137, 875
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	11, 759
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	3 cut(s)	265, 299, 526
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	3 cut(s)	261, 295, 522
FokI	GGATG	1 cut(s)	835
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	685
Hin1II	CATG	3 cut(s)	265, 299, 526
HinfI	GANTC	1 cut(s)	218
HphI	GGTGA	2 cut(s)	341, 521
Hpy166II	GTNNAC	2 cut(s)	529, 760
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	5 cut(s)	243, 587, 693, 721, 857
Hpy8I	GTNNAC	2 cut(s)	529, 760
HpyAV	CCTTC	4 cut(s)	83, 285, 414, 734
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	4 cut(s)	180, 520, 735, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 560
HpyF3I	CTNAG	2 cut(s)	629, 794
HpySE526I	ACGT	1 cut(s)	772
Hsp92II	CATG	3 cut(s)	265, 299, 526
Kzo9I	GATC	6 cut(s)	253, 338, 392, 589, 664, 814
LmnI	GCTCC	2 cut(s)	126, 753
LpnPI	CCDG	7 cut(s)	46, 73, 133, 153, 321, 551, 611
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	772
MalI	GATC	6 cut(s)	255, 340, 394, 591, 666, 816
MboI	GATC	6 cut(s)	253, 338, 392, 589, 664, 814
MboII	GAAGA	6 cut(s)	17, 44, 110, 176, 461, 776
MflI	RGATCY	1 cut(s)	392
MhlI	GDGCHC	2 cut(s)	147, 159
MlsI	TGGCCA	1 cut(s)	685
MluCI	AATT	5 cut(s)	167, 191, 342, 515, 801
MluNI	TGGCCA	1 cut(s)	685
Mox20I	TGGCCA	1 cut(s)	685
MscI	TGGCCA	1 cut(s)	685
MseI	TTAA	4 cut(s)	6, 258, 411, 674
Msp20I	TGGCCA	1 cut(s)	685
MspA1I	CMGCKG	1 cut(s)	793
MspR9I	CCNGG	1 cut(s)	61
Mva1269I	GAATGC	4 cut(s)	182, 229, 563, 832
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	233, 560
NdeII	GATC	6 cut(s)	253, 338, 392, 589, 664, 814
NlaIII	CATG	3 cut(s)	265, 299, 526
NlaIV	GGNNCC	3 cut(s)	65, 128, 138
NspV	TTCGAA	1 cut(s)	221
PctI	GAATGC	4 cut(s)	182, 229, 563, 832
PfeI	GAWTC	1 cut(s)	218
PshBI	ATTAAT	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	3 cut(s)	65, 128, 138
PspPI	GGNCC	2 cut(s)	137, 875
PsuI	RGATCY	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	793
RsaI	GTAC	2 cut(s)	637, 771
RsaNI	GTAC	2 cut(s)	636, 770
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	4 cut(s)	6, 258, 411, 674
Sau3AI	GATC	6 cut(s)	253, 338, 392, 589, 664, 814
Sau96I	GGNCC	2 cut(s)	137, 875
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	2 cut(s)	147, 159
SetI	ASST	7 cut(s)	159, 425, 556, 692, 771, 775, 795
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	555
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	2 cut(s)	137, 875
SmlI	CTYRAG	2 cut(s)	131, 241
SmoI	CTYRAG	2 cut(s)	131, 241
Sse9I	AATT	5 cut(s)	167, 191, 342, 515, 801
SsiI	CCGC	1 cut(s)	878
SspMI	CTAG	1 cut(s)	228
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	59
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	4 cut(s)	216, 221, 314, 856
TasI	AATT	5 cut(s)	167, 191, 342, 515, 801
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	4 cut(s)	6, 258, 411, 674
Tru9I	TTAA	4 cut(s)	6, 258, 411, 674
TscAI	CASTG	2 cut(s)	152, 742
TspDTI	ATGAA	5 cut(s)	278, 305, 312, 397, 839
TspRI	CASTG	2 cut(s)	152, 742
VpaK11BI	GGWCC	2 cut(s)	137, 875
VspI	ATTAAT	1 cut(s)	411
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.