Rmu_sc0000867.1_g000003

Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000867.1
OG0001343
Physical Location & Seq
Forward (+)
14013 .. 14418
406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000867.1_g000003.1.cds

Sequence Viewer

Length: 327 bp
atgaaaactcctcttcagttctttgctttcactctttttcttctgtactggcaaccaatcaaacccatcagagctggccatggtgtggaagaaatagggtataattataggaaagggagcaagaagggaccagagcactggggagaccttaagaaagaatggaaggcatgcaaagatggaaaattgcaatcgccaatagatttgtcggataagcacgctagaaaagcaatctcaagagtatatgatcttaaaatgagctataagccttcaaatgcaactatgaagaatgaaggtcatgctattgcggtatggaagcttagtgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase

Protein Analysis

108

Amino Acids

12.42

Weight (kDa)

9.8

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 85
AciI CCGC 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 76
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 85
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 270
AluBI AGCT 3 cut(s) 74, 258, 316
AluI AGCT 3 cut(s) 74, 258, 316
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 138
AoxI GGCC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 128
AvaII GGWCC 1 cut(s) 128
BalI TGGCCA 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 138
BccI CCATC 2 cut(s) 74, 170
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 219, 325
BfrI CTTAAG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 129
BmrI ACTGGG 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 217
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 2 cut(s) 53, 143
BseDI CCNNGG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 53, 143
BshFI GGCC 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 138
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 244
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 1 cut(s) 305
BspANI GGCC 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 129
BspTI CTTAAG 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 138
BsrI ACTGG 2 cut(s) 53, 143
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 76, 169, 216
BstDEI CTNAG 1 cut(s) 317
BstDSI CCRYGG 1 cut(s) 79
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 171
BstXI CCANNNNNNTGG 1 cut(s) 138
BsuRI GGCC 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 3 cut(s) 76, 169, 216
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 46
CviAII CATG 3 cut(s) 80, 168, 296
CviJI RGCY 5 cut(s) 74, 78, 258, 265, 316
CviKI_1 RGCY 5 cut(s) 74, 78, 258, 265, 316
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 317
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 3 cut(s) 83, 171, 299
FaqI GGGAC 1 cut(s) 141
FatI CATG 3 cut(s) 79, 167, 295
FspBI CTAG 2 cut(s) 219, 325
HaeIII GGCC 1 cut(s) 78
Hin1II CATG 3 cut(s) 83, 171, 299
HindIII AAGCTT 1 cut(s) 314
Hpy188I TCNGA 2 cut(s) 71, 208
Hpy188III TCNNGA 1 cut(s) 234
HpyAV CCTTC 4 cut(s) 118, 157, 276, 284
HpyCH4V TGCA 3 cut(s) 171, 187, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 317
Hsp92II CATG 3 cut(s) 83, 171, 299
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 4 cut(s) 34, 60, 124, 144
MaeI CTAG 2 cut(s) 219, 325
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 4 cut(s) 5, 32, 101, 295
MhlI GDGCHC 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 2 cut(s) 103, 182
MluNI TGGCCA 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 1 cut(s) 21
Mox20I TGGCCA 1 cut(s) 78
MscI TGGCCA 1 cut(s) 78
MseI TTAA 2 cut(s) 150, 249
Msp20I TGGCCA 1 cut(s) 78
MspCI CTTAAG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 224
NcoI CCATGG 1 cut(s) 79
NdeII GATC 1 cut(s) 244
NlaIII CATG 3 cut(s) 83, 171, 299
NlaIV GGNNCC 1 cut(s) 129
NspI RCATGY 1 cut(s) 171
PaeI GCATGC 1 cut(s) 171
PflMI CCANNNNNTGG 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 128
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 2 cut(s) 150, 249
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 138
SetI ASST 5 cut(s) 76, 150, 260, 295, 318
SinI GGWCC 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 149, 232
SmoI CTYRAG 2 cut(s) 149, 232
SphI GCATGC 1 cut(s) 171
Sse9I AATT 2 cut(s) 103, 182
SsiI CCGC 1 cut(s) 305
SspMI CTAG 2 cut(s) 219, 325
StyI CCWWGG 1 cut(s) 79
TasI AATT 2 cut(s) 103, 182
TatI WGTACW 1 cut(s) 45
Tru1I TTAA 2 cut(s) 150, 249
Tru9I TTAA 2 cut(s) 150, 249
TscAI CASTG 1 cut(s) 143
TspDTI ATGAA 3 cut(s) 17, 296, 303
TspRI CASTG 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 85
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 128
XceI RCATGY 1 cut(s) 171
XspI CTAG 2 cut(s) 219, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.