FvH4_6g18720

protein At5g03900, chloroplastic-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
12339268 .. 12346598
7331 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18720.t7

Sequence Viewer

Length: 1233 bp
ATGAGGCTCAGAAGGCTTTACAGGCTCTCGCTGCTGACACTGAGGGCTTCTTGGAGATGGTCTCAACAGGTCTCGGATGAAGGCGATGTGCTCTATGTTTTCCCCAAGGATTATCGAGCCAAGCTTCTCGGCAAGTCGTTTCGGATGAAGGTTGAGCCTATTCTGGAGAAGGCTAAGGCCGGGACCGAGTACGTAGCCAGGGTTTCGTTTGGGACTGCCTTGATTGCCTCCATTGTTCTTGTTTATACTGCAATTATTGTTGCTATCTCGTCTAGTAGGAGTGAGGATGACAATCGTGGACGACGTGGAAGATCATATGACTCAGGGTTCACCTTTTACATGAATCCTTTTGACCTCTTTTGGTTCTGGGATCCATATTACTATCGGCGTCGGAGAGTGCAAACCGAGGATAACAAGCTGAAGTTCGTTGAATCTATTTTCTCATTTGTATTTGGCGATGGTGATCCAAATCAAGGAATTGAAGAAGAGAGATGGAAGTTGATTGGGCAATACATAACCTCCAATGGTGGTGTTGTTGCAGCTGAAGAACTTGCTCCATATCTTGATTTGGAAGGGGGATCTATGGATGATGAAACATACATCTTACCTGTTCTTTTACGGTATGAGGGCCAGCCTGTAATAGATGAAGAGGGAAACATTCTCTACCAATTTCCCTCTCTACAGCGTACGGCGTCTTCTCAAAGAAGTGGAAGGAAAGAATATGTAGGGAGAAGATGGGCTGATTTTGTTGGTGGAGTTGATAAATTTTTTACTGAGAAAAAATGGGAATTCAGTAACACTAGCATTTCTGAGAGAGCACTAGTTGCGGGACTTGGTGGACTTAATTTATTTGGGGTTATCATTCTTGGAGCCATCTTAAAGGATAGTGCAGTTGCACCAGTTGGTTTTATTAAGTTCATTAGCAGCATATTTCCATTACTTCAGGTTTATGCTGGTTCATTCTTTGCAATTCCTTTGCTCCGATGGTTCATTGTGAGTAAGACAAATGCTGACATAGAGAAAAGAAATCAAGCAAGATTGAAATCTGCTCGAGCCCTTGAATCGCCAGATATCTCACTAAGACGAAAGCTGCTCAGTGCCCGGGACATGGCCCAAAGAACAGTCATAGGACAGGATAGAATTGTATATAGTACTGACAAGGATTTGATTGAGCAAGACTATGAGGCCCAAGATTGGGATAGAAGATTTCGAGAGATAGAGAAGTCAGATTGA

Protein Analysis

411

Amino Acids

47.16

Weight (kDa)

8.91

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000516)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03900 AT5G03900
fragaria_vesca FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis pycom12g02390 pycom14g02210
rosa_chinensis RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 827
AclWI GGATC 4 cut(s) 365, 378, 458, 586
AcsI RAATTY 2 cut(s) 764, 788
AcuI CTGAAG 3 cut(s) 440, 564, 926
AcyI GRCGYC 2 cut(s) 388, 692
AfaI GTAC 3 cut(s) 191, 688, 1153
AfiI CCNNNNNNNGG 4 cut(s) 473, 1108, 1194, 1195
AgsI TTSAA 4 cut(s) 431, 482, 1042, 1061
AhlI ACTAGT 1 cut(s) 820
AjiI CACGTC 1 cut(s) 305
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 4 cut(s) 124, 418, 542, 1090
AluI AGCT 4 cut(s) 124, 418, 542, 1090
Alw21I GWGCWC 2 cut(s) 93, 820
Alw26I GTCTC 2 cut(s) 66, 76
AlwI GGATC 4 cut(s) 365, 378, 458, 586
Ama87I CYCGRG 2 cut(s) 1050, 1101
AoxI GGCC 4 cut(s) 177, 628, 1110, 1185
ApeKI GCWGC 4 cut(s) 31, 539, 924, 1090
ApoI RAATTY 2 cut(s) 764, 788
AspS9I GGNCC 4 cut(s) 183, 628, 1111, 1186
AsuC2I CCSGG 3 cut(s) 181, 1102, 1103
AsuHPI GGTGA 2 cut(s) 322, 473
AvaI CYCGRG 2 cut(s) 1050, 1101
AvaII GGWCC 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 1102
BamHI GGATCC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 1057
BarI GAAGNNNNNNTAC 2 cut(s) 679, 711
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 2 cut(s) 93, 820
BbvI GCAGC 4 cut(s) 18, 551, 936, 1077
BccI CCATC 6 cut(s) 51, 452, 486, 729, 881, 978
BceAI ACGGC 1 cut(s) 705
BciT130I CCWGG 1 cut(s) 199
BcnI CCSGG 3 cut(s) 181, 1102, 1103
BcoDI GTCTC 2 cut(s) 66, 76
BcuI ACTAGT 1 cut(s) 820
BfaI CTAG 3 cut(s) 273, 801, 821
BfmI CTRYAG 1 cut(s) 680
BisI GCNGC 4 cut(s) 32, 540, 925, 1091
BlsI GCNGC 4 cut(s) 33, 541, 926, 1092
BmcAI AGTACT 1 cut(s) 1153
Bme1390I CCNGG 4 cut(s) 181, 199, 1102, 1103
Bme18I GGWCC 1 cut(s) 183
BmeT110I CYCGRG 2 cut(s) 1050, 1101
BmgBI CACGTC 1 cut(s) 305
BmgT120I GGNCC 4 cut(s) 183, 628, 1111, 1186
BmiI GGNNCC 3 cut(s) 184, 372, 871
BmrFI CCNGG 4 cut(s) 181, 199, 1102, 1103
BpiI GAAGAC 1 cut(s) 687
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 174
BpuMI CCSGG 3 cut(s) 181, 1102, 1103
BsaAI YACGTR 1 cut(s) 193
BsaBI GATNNNNATC 4 cut(s) 291, 462, 468, 1042
BsaHI GRCGYC 2 cut(s) 388, 692
BsaI GGTCTC 2 cut(s) 66, 76
BsaJI CCNNGG 4 cut(s) 105, 198, 405, 1101
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 4 cut(s) 473, 1108, 1194, 1195
Bse1I ACTGG 1 cut(s) 899
Bse8I GATNNNNATC 4 cut(s) 291, 462, 468, 1042
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 4 cut(s) 105, 198, 405, 1101
BseGI GGATG 4 cut(s) 82, 150, 292, 592
BseJI GATNNNNATC 4 cut(s) 291, 462, 468, 1042
BseLI CCNNNNNNNGG 4 cut(s) 473, 1108, 1194, 1195
BseMII CTCAG 6 cut(s) 22, 32, 336, 765, 801, 1108
BseNI ACTGG 1 cut(s) 899
BseSI GKGCMC 1 cut(s) 1102
BseXI GCAGC 4 cut(s) 18, 551, 936, 1077
BsgI GTGCAG 1 cut(s) 909
BshFI GGCC 4 cut(s) 179, 630, 1112, 1187
BsiHKAI GWGCWC 2 cut(s) 93, 820
BsiHKCI CYCGRG 2 cut(s) 1050, 1101
BsiSI CCGG 2 cut(s) 180, 1102
BsiWI CGTACG 1 cut(s) 686
BslFI GGGAC 4 cut(s) 196, 226, 843, 1118
BslI CCNNNNNNNGG 4 cut(s) 473, 1108, 1194, 1195
BsmAI GTCTC 2 cut(s) 66, 76
BsmFI GGGAC 4 cut(s) 196, 226, 843, 1118
BsnI GGCC 4 cut(s) 179, 630, 1112, 1187
Bso31I GGTCTC 2 cut(s) 66, 76
BsoBI CYCGRG 2 cut(s) 1050, 1101
Bsp1286I GDGCHC 4 cut(s) 93, 820, 1057, 1102
Bsp143I GATC 4 cut(s) 311, 370, 463, 578
BspACI CCGC 1 cut(s) 827
BspANI GGCC 4 cut(s) 179, 630, 1112, 1187
BspCNI CTCAG 6 cut(s) 21, 33, 335, 766, 802, 1107
BspLI GGNNCC 3 cut(s) 184, 372, 871
BspPI GGATC 4 cut(s) 365, 378, 458, 586
BspTNI GGTCTC 2 cut(s) 66, 76
BsrI ACTGG 1 cut(s) 899
BssECI CCNNGG 4 cut(s) 105, 198, 405, 1101
BssMI GATC 4 cut(s) 311, 370, 463, 578
BssNI GRCGYC 2 cut(s) 388, 692
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 621, 1123
Bst6I CTCTTC 2 cut(s) 480, 642
BstACI GRCGYC 2 cut(s) 388, 692
BstAPI GCANNNNNTGC 1 cut(s) 824
BstBAI YACGTR 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 8 cut(s) 8, 41, 174, 322, 774, 810, 1079, 1094
BstF5I GGATG 4 cut(s) 82, 150, 292, 592
BstKTI GATC 4 cut(s) 314, 373, 466, 581
BstMAI GTCTC 2 cut(s) 66, 76
BstMBI GATC 4 cut(s) 311, 370, 463, 578
BstMWI GCNNNNNNNGC 5 cut(s) 13, 22, 31, 224, 824
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 4 cut(s) 179, 197, 1100, 1101
BstSFI CTRYAG 1 cut(s) 680
BstSLI GKGCMC 1 cut(s) 1102
BstSNI TACGTA 1 cut(s) 193
BstV1I GCAGC 4 cut(s) 18, 551, 936, 1077
BstV2I GAAGAC 1 cut(s) 687
BstX2I RGATCY 2 cut(s) 370, 578
BstYI RGATCY 2 cut(s) 370, 578
BsuRI GGCC 4 cut(s) 179, 630, 1112, 1187
BtgZI GCGATG 2 cut(s) 99, 471
BtrI CACGTC 1 cut(s) 305
BtsCI GGATG 4 cut(s) 82, 150, 292, 592
BtsIMutI CAGTG 2 cut(s) 38, 1102
Cac8I GCNNGC 1 cut(s) 632
Cfr13I GGNCC 4 cut(s) 183, 628, 1111, 1186
Cfr9I CCCGGG 1 cut(s) 1101
CseI GACGC 2 cut(s) 377, 681
Csp6I GTAC 3 cut(s) 190, 687, 1152
CviAII CATG 2 cut(s) 340, 1108
CviQI GTAC 3 cut(s) 190, 687, 1152
DdeI CTNAG 8 cut(s) 8, 41, 174, 322, 774, 810, 1079, 1094
DpnI GATC 4 cut(s) 313, 372, 465, 580
DpnII GATC 4 cut(s) 311, 370, 463, 578
Eam1104I CTCTTC 2 cut(s) 480, 642
EarI CTCTTC 2 cut(s) 480, 642
Eco105I TACGTA 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 1057
Eco31I GGTCTC 2 cut(s) 66, 76
Eco32I GATATC 1 cut(s) 1072
Eco47I GGWCC 1 cut(s) 183
Eco57I CTGAAG 3 cut(s) 440, 564, 926
Eco88I CYCGRG 2 cut(s) 1050, 1101
EcoRI GAATTC 1 cut(s) 788
EcoRII CCWGG 1 cut(s) 197
EcoRV GATATC 1 cut(s) 1072
EcoT14I CCWWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 1057
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 2 cut(s) 343, 1111
FaqI GGGAC 4 cut(s) 196, 226, 843, 1118
FatI CATG 2 cut(s) 339, 1107
FauI CCCGC 1 cut(s) 820
FauNDI CATATG 1 cut(s) 316
Fnu4HI GCNGC 4 cut(s) 32, 540, 925, 1091
FokI GGATG 4 cut(s) 89, 157, 299, 599
FriOI GRGCYC 1 cut(s) 1057
Fsp4HI GCNGC 4 cut(s) 32, 540, 925, 1091
FspBI CTAG 3 cut(s) 273, 801, 821
GluI GCNGC 4 cut(s) 32, 540, 925, 1091
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 4 cut(s) 179, 630, 1112, 1187
HapII CCGG 2 cut(s) 180, 1102
HgaI GACGC 2 cut(s) 377, 681
Hin1I GRCGYC 2 cut(s) 388, 692
Hin1II CATG 2 cut(s) 343, 1111
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 4 cut(s) 320, 343, 431, 1061
HpaII CCGG 2 cut(s) 180, 1102
HphI GGTGA 2 cut(s) 322, 473
Hpy166II GTNNAC 3 cut(s) 299, 330, 839
Hpy188I TCNGA 7 cut(s) 11, 76, 144, 393, 811, 983, 1228
Hpy188III TCNNGA 3 cut(s) 164, 563, 1211
Hpy8I GTNNAC 3 cut(s) 299, 330, 839
Hpy99I CGWCG 2 cut(s) 306, 393
HpyAV CCTTC 6 cut(s) 6, 74, 142, 163, 566, 705
HpyCH4III ACNGT 2 cut(s) 621, 1123
HpyCH4IV ACGT 2 cut(s) 192, 304
HpyCH4V TGCA 6 cut(s) 251, 400, 539, 890, 896, 968
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 22, 31, 224, 824
HpyF3I CTNAG 8 cut(s) 8, 41, 174, 322, 774, 810, 1079, 1094
HpySE526I ACGT 2 cut(s) 192, 304
Hsp92I GRCGYC 2 cut(s) 388, 692
Hsp92II CATG 2 cut(s) 343, 1111
Kzo9I GATC 4 cut(s) 311, 370, 463, 578
LmnI GCTCC 3 cut(s) 559, 869, 984
Lsp1109I GCAGC 4 cut(s) 18, 551, 936, 1077
MaeI CTAG 3 cut(s) 273, 801, 821
MaeII ACGT 2 cut(s) 192, 304
MaeIII GTNAC 1 cut(s) 794
MalI GATC 4 cut(s) 313, 372, 465, 580
MboI GATC 4 cut(s) 311, 370, 463, 578
MboII GAAGA 8 cut(s) 321, 494, 497, 557, 659, 687, 744, 1215
MflI RGATCY 2 cut(s) 370, 578
MhlI GDGCHC 4 cut(s) 93, 820, 1057, 1102
MluCI AATT 8 cut(s) 252, 477, 668, 764, 788, 844, 969, 1140
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 371
MseI TTAA 3 cut(s) 843, 878, 912
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 2 cut(s) 180, 1102
MspR9I CCNGG 4 cut(s) 181, 199, 1102, 1103
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 5 cut(s) 13, 22, 31, 224, 824
NciI CCSGG 3 cut(s) 181, 1102, 1103
NdeI CATATG 1 cut(s) 316
NdeII GATC 4 cut(s) 311, 370, 463, 578
NlaIII CATG 2 cut(s) 343, 1111
NlaIV GGNNCC 3 cut(s) 184, 372, 871
NmeAIII GCCGAG 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 1050
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PfeI GAWTC 3 cut(s) 343, 431, 1061
Pfl23II CGTACG 1 cut(s) 686
PkrI GCNGC 4 cut(s) 33, 541, 926, 1092
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
Ppu21I YACGTR 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspLI CGTACG 1 cut(s) 686
PspN4I GGNNCC 3 cut(s) 184, 372, 871
PspPI GGNCC 4 cut(s) 183, 628, 1111, 1186
PspXI VCTCGAGB 1 cut(s) 1050
PsuI RGATCY 2 cut(s) 370, 578
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 3 cut(s) 191, 688, 1153
RsaNI GTAC 3 cut(s) 190, 687, 1152
SaqAI TTAA 3 cut(s) 843, 878, 912
SatI GCNGC 4 cut(s) 32, 540, 925, 1091
Sau3AI GATC 4 cut(s) 311, 370, 463, 578
Sau96I GGNCC 4 cut(s) 183, 628, 1111, 1186
ScaI AGTACT 1 cut(s) 1153
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 4 cut(s) 181, 199, 1102, 1103
SduI GDGCHC 4 cut(s) 93, 820, 1057, 1102
SfcI CTRYAG 1 cut(s) 680
Sfr274I CTCGAG 1 cut(s) 1050
SinI GGWCC 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 1050
SmaI CCCGGG 1 cut(s) 1103
SmlI CTYRAG 1 cut(s) 1050
SmoI CTYRAG 1 cut(s) 1050
SnaBI TACGTA 1 cut(s) 193
SpeI ACTAGT 1 cut(s) 820
Sse9I AATT 8 cut(s) 252, 477, 668, 764, 788, 844, 969, 1140
SsiI CCGC 1 cut(s) 827
SspMI CTAG 3 cut(s) 273, 801, 821
StyD4I CCNGG 4 cut(s) 179, 197, 1100, 1101
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 621, 1123
TaiI ACGT 2 cut(s) 195, 307
TaqI TCGA 3 cut(s) 115, 1051, 1210
TaqII GACCGA 1 cut(s) 200
TasI AATT 8 cut(s) 252, 477, 668, 764, 788, 844, 969, 1140
TatI WGTACW 1 cut(s) 1151
TfiI GAWTC 3 cut(s) 343, 431, 1061
Tru1I TTAA 3 cut(s) 843, 878, 912
Tru9I TTAA 3 cut(s) 843, 878, 912
TscAI CASTG 2 cut(s) 45, 1102
TseI GCWGC 4 cut(s) 31, 539, 924, 1090
TspDTI ATGAA 8 cut(s) 93, 161, 356, 606, 660, 907, 948, 979
TspMI CCCGGG 1 cut(s) 1101
TspRI CASTG 2 cut(s) 45, 1102
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 2 cut(s) 764, 788
XhoI CTCGAG 1 cut(s) 1050
XmaI CCCGGG 1 cut(s) 1101
XspI CTAG 3 cut(s) 273, 801, 821
ZrmI AGTACT 1 cut(s) 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.