Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

19256127 .. 19260322

Gene Structure 4196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG210500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCGTCCATGGGTACCTGCTTCACTCTTCCACCAAACCCTTGTCATCATCTCCTTTTCAAAGCTTCACTCTTACCTAATCGTTCCCAAACCCTCCCCATTATCCAAGCCCCCCTTTTCCCGTCCCTTGCCTCCAAGTTTCAACAATCTACGGTTTCTGCGCCGGTTGTGAGAGCCAGCATTGCCGCTGCCGCCACCGGGGTCAGGCCCAGCGGGGCCGTCGAGAGCGATAAGTTACCTTCCGATGTGAGAAAGAGAGCAATGGAAGTTGTGGACGCTTGTGGAAGAAGAGTGACTGTTGATGACGTGGCCGGCAGAGCAGGGCTTAAGCTCCAGGAGGCTCAGAACGCTTTGCAAGCTCTCGCTTCTGACACTCAGGGCTTCTTGGAGGTATCCGATGAAGGTGATGTACTCTATGTTTTCCCCAGAGATTATAGAGCAAAACTTGTAGGGAAATCGTTCATAATGAGAGTTGAGCCGCTGCTTGAGAAGGCAAAGGTTTCATTTGGAACTGCTCTGATTGCTTCCATTATTCTTGTTTTTACTGCAATTCTTGTTGCCCTTCTTGCCCTTAAAGGAAGTGAAGATAGTGATGACGGCAAGAGCTCTTCAACTTCTTTTGACACTAGTTTCAGTTTTTCTTCGTGTCAGGATGAAGTGTTTTGGTACTGGGATCCCAATTACTATAGGAAGCGACGAGGAAAACCACAAACAGATGATGGGGAGTTGAAATTTGGTGAATCTTTTTTCTCGTTTGTATTTGGCGATGGTGATCCAAATCAAGGAATTGAAGAAAAGAGATGGAAGATGATTGGGCACTACATATCCTCTAATGGTGGTGTTGTTGCAGCTGAAGAGCTTGCTCCATATCTTGATATAGAAACTTCAGTGGAAACTCCGACTGATGAAGCATACATCTTACCTGTTCTTTCACGGTATGAGGGTCAGCCTTTGATAGATGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

35.18

Weight (kDa)

4.93

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	26
Acc65I	GGTACC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	4 cut(s)	186, 192, 213, 479
AclWI	GGATC	3 cut(s)	668, 681, 767
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	731
AcuI	CTGAAG	2 cut(s)	870, 873
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	16, 411, 668
AfiI	CCNNNNNNNGG	3 cut(s)	198, 204, 782
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	5 cut(s)	61, 143, 612, 730, 791
AhlI	ACTAGT	1 cut(s)	626
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	6 cut(s)	65, 331, 359, 606, 851, 859
AluI	AGCT	6 cut(s)	65, 331, 359, 606, 851, 859
Alw21I	GWGCWC	1 cut(s)	608
AlwI	GGATC	3 cut(s)	668, 681, 767
AoxI	GGCC	3 cut(s)	206, 216, 309
ApeKI	GCWGC	3 cut(s)	188, 481, 848
ApoI	RAATTY	1 cut(s)	731
Asp700I	GAANNNNTTC	1 cut(s)	458
Asp718I	GGTACC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	207, 216
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	3 cut(s)	416, 749, 782
BaeGI	GKGCMC	1 cut(s)	819
BamHI	GGATCC	1 cut(s)	673
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	608
BarI	GAAGNNNNNNTAC	2 cut(s)	393, 425
Bbv12I	GWGCWC	1 cut(s)	608
BbvI	GCAGC	3 cut(s)	175, 468, 860
BccI	CCATC	3 cut(s)	713, 761, 795
BceAI	ACGGC	2 cut(s)	203, 613
BciT130I	CCWGG	1 cut(s)	335
BciVI	GTATCC	1 cut(s)	403
BcnI	CCSGG	1 cut(s)	199
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	1 cut(s)	627
BfmI	CTRYAG	1 cut(s)	685
BfrI	CTTAAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	403
BisI	GCNGC	6 cut(s)	186, 189, 192, 479, 482, 849
BlsI	GCNGC	6 cut(s)	187, 190, 193, 480, 483, 850
Bme1390I	CCNGG	2 cut(s)	199, 335
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	207, 216
BmiI	GGNNCC	3 cut(s)	16, 217, 675
BmrFI	CCNGG	2 cut(s)	199, 335
BmrI	ACTGGG	1 cut(s)	679
BmuI	ACTGGG	1 cut(s)	679
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	199
BsaBI	GATNNNNATC	2 cut(s)	771, 777
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	9, 198
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 204, 782
Bse118I	RCCGGY	2 cut(s)	163, 311
Bse1I	ACTGG	1 cut(s)	674
Bse3DI	GCAATG	2 cut(s)	180, 267
Bse8I	GATNNNNATC	2 cut(s)	771, 777
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	9, 198
BseGI	GGATG	1 cut(s)	658
BseJI	GATNNNNATC	2 cut(s)	771, 777
BseLI	CCNNNNNNNGG	3 cut(s)	198, 204, 782
BseMI	GCAATG	2 cut(s)	180, 267
BseMII	CTCAG	2 cut(s)	356, 389
BseNI	ACTGG	1 cut(s)	674
BseSI	GKGCMC	1 cut(s)	819
BseXI	GCAGC	3 cut(s)	175, 468, 860
BseYI	CCCAGC	1 cut(s)	209
BshFI	GGCC	3 cut(s)	208, 218, 311
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	608
BsiSI	CCGG	3 cut(s)	164, 198, 312
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	3 cut(s)	198, 204, 782
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	208, 218, 311
Bsp1286I	GDGCHC	2 cut(s)	608, 819
Bsp143I	GATC	2 cut(s)	673, 772
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	4 cut(s)	186, 192, 213, 479
BspANI	GGCC	3 cut(s)	208, 218, 311
BspCNI	CTCAG	2 cut(s)	355, 388
BspLI	GGNNCC	3 cut(s)	16, 217, 675
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	3 cut(s)	668, 681, 767
BspQI	GCTCTTC	2 cut(s)	613, 849
BspT107I	GGYRCC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	326
BsrDI	GCAATG	2 cut(s)	180, 267
BsrFI	RCCGGY	2 cut(s)	163, 311
BsrI	ACTGG	1 cut(s)	674
BssAI	RCCGGY	2 cut(s)	163, 311
BssECI	CCNNGG	2 cut(s)	9, 198
BssMI	GATC	2 cut(s)	673, 772
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	3 cut(s)	154, 298, 936
Bst6I	CTCTTC	5 cut(s)	33, 283, 613, 849, 957
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	326
BstC8I	GCNNGC	4 cut(s)	178, 313, 357, 861
BstDEI	CTNAG	2 cut(s)	342, 375
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	658
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	676, 775
BstMBI	GATC	2 cut(s)	673, 772
BstMWI	GCNNNNNNNGC	7 cut(s)	182, 191, 317, 347, 356, 521, 566
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	197, 333
BstSFI	CTRYAG	1 cut(s)	685
BstSLI	GKGCMC	1 cut(s)	819
BstV1I	GCAGC	3 cut(s)	175, 468, 860
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	3 cut(s)	208, 218, 311
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	780
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	658
BtsIMutI	CAGTG	1 cut(s)	894
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	4 cut(s)	178, 313, 357, 861
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	2 cut(s)	163, 311
Cfr13I	GGNCC	2 cut(s)	207, 216
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	3 cut(s)	15, 410, 667
CviAII	CATG	1 cut(s)	10
CviQI	GTAC	3 cut(s)	15, 410, 667
DdeI	CTNAG	2 cut(s)	342, 375
DpnI	GATC	2 cut(s)	675, 774
DpnII	GATC	2 cut(s)	673, 772
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	5 cut(s)	33, 283, 613, 849, 957
EarI	CTCTTC	5 cut(s)	33, 283, 613, 849, 957
Ecl136II	GAGCTC	1 cut(s)	606
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	608
Eco53kI	GAGCTC	1 cut(s)	606
Eco57I	CTGAAG	2 cut(s)	870, 873
EcoICRI	GAGCTC	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	1 cut(s)	13
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	1 cut(s)	9
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	6 cut(s)	186, 189, 192, 479, 482, 849
FokI	GGATG	1 cut(s)	665
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	6 cut(s)	186, 189, 192, 479, 482, 849
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	6 cut(s)	186, 189, 192, 479, 482, 849
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	3 cut(s)	208, 218, 311
HapII	CCGG	3 cut(s)	164, 198, 312
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	1 cut(s)	740
HpaII	CCGG	3 cut(s)	164, 198, 312
HphI	GGTGA	3 cut(s)	416, 749, 782
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	6 cut(s)	244, 345, 370, 397, 519, 900
Hpy188III	TCNNGA	3 cut(s)	223, 650, 872
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	2 cut(s)	224, 699
HpyAV	CCTTC	4 cut(s)	249, 395, 484, 572
HpyCH4III	ACNGT	3 cut(s)	154, 298, 936
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	355, 548, 848
HpyF10VI	GCNNNNNNNGC	7 cut(s)	182, 191, 317, 347, 356, 521, 566
HpyF3I	CTNAG	2 cut(s)	342, 375
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	1 cut(s)	161
KpnI	GGTACC	1 cut(s)	18
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	673, 772
LguI	GCTCTTC	2 cut(s)	613, 849
LmnI	GCTCC	2 cut(s)	336, 868
Lsp1109I	GCAGC	3 cut(s)	175, 468, 860
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	234, 292
MalI	GATC	2 cut(s)	675, 774
MboI	GATC	2 cut(s)	673, 772
MboII	GAAGA	9 cut(s)	20, 297, 300, 596, 600, 633, 803, 817, 866
MflI	RGATCY	1 cut(s)	673
MhlI	GDGCHC	2 cut(s)	608, 819
MluCI	AATT	4 cut(s)	549, 679, 731, 786
MmeI	TCCRAC	1 cut(s)	923
MnlI	CCTC	7 cut(s)	104, 142, 331, 382, 692, 838, 934
MroNI	GCCGGC	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	2 cut(s)	327, 573
MspA1I	CMGCKG	4 cut(s)	188, 213, 481, 851
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	3 cut(s)	164, 198, 312
MspR9I	CCNGG	2 cut(s)	199, 335
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	7 cut(s)	182, 191, 317, 347, 356, 521, 566
NaeI	GCCGGC	1 cut(s)	313
NciI	CCSGG	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	673, 772
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	3 cut(s)	16, 217, 675
NmuCI	GTSAC	1 cut(s)	292
PciSI	GCTCTTC	2 cut(s)	613, 849
PdiI	GCCGGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	740
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	6 cut(s)	187, 190, 193, 480, 483, 850
Psp124BI	GAGCTC	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	3 cut(s)	16, 217, 675
PspPI	GGNCC	2 cut(s)	207, 216
PsuI	RGATCY	1 cut(s)	673
PvuII	CAGCTG	1 cut(s)	851
RsaI	GTAC	3 cut(s)	16, 411, 668
RsaNI	GTAC	3 cut(s)	15, 410, 667
SacI	GAGCTC	1 cut(s)	608
SapI	GCTCTTC	2 cut(s)	613, 849
SaqAI	TTAA	2 cut(s)	327, 573
SatI	GCNGC	6 cut(s)	186, 189, 192, 479, 482, 849
Sau3AI	GATC	2 cut(s)	673, 772
Sau96I	GGNCC	2 cut(s)	207, 216
ScrFI	CCNGG	2 cut(s)	199, 335
SduI	GDGCHC	2 cut(s)	608, 819
SfcI	CTRYAG	1 cut(s)	685
SmlI	CTYRAG	2 cut(s)	326, 485
SmoI	CTYRAG	2 cut(s)	326, 485
SpeI	ACTAGT	1 cut(s)	626
Sse9I	AATT	4 cut(s)	549, 679, 731, 786
SsiI	CCGC	4 cut(s)	186, 192, 213, 479
SspMI	CTAG	1 cut(s)	627
SstI	GAGCTC	1 cut(s)	608
StyD4I	CCNGG	2 cut(s)	197, 333
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	3 cut(s)	154, 298, 936
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	222
TasI	AATT	4 cut(s)	549, 679, 731, 786
TatI	WGTACW	1 cut(s)	409
TauI	GCSGC	3 cut(s)	188, 194, 481
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	2 cut(s)	327, 573
Tru9I	TTAA	2 cut(s)	327, 573
TscAI	CASTG	1 cut(s)	894
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	3 cut(s)	188, 481, 848
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	5 cut(s)	414, 451, 492, 669, 921
TspRI	CASTG	1 cut(s)	894
Vha464I	CTTAAG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.