Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00297

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

75896 .. 80144

Gene Structure 4249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

TTTTTCTCATTTGTATTTGGCGATGGTGATCCGAATCGAGGAATCGAAGAAAAGAGATGGAAGCTGATTGGGAACTACATATCCTCTAATGGTGGTGTTGTTGCAGCTGAAGAGCTTGCTCCATATCTTGATATAGAAACTACAGGGGATACTCTGACTGATGAAGCATACATCTTACCTGTTCTTTCACGGTATGAGGGTCAGCCTTTAATAGATGAGGAGATTTATGCTGGTTTCTTCTTTGTAATTCCTCTGTTCCGGTGGTTTGTCTTGCTCAAGACAAATGCTGACATAGAAAAAAGAAATCAAGCCAGACAGCAATTTGCTCAAGACATTGAATTGCCTGATCTATCACTAAGACAAAAGCTCCTCAGTGCTCGGAACATGGCCCAAAGAATTGTCATAGGGCTGGACAGAATTGTTTATAGCTCTCGCAAGGATTTGTTTGAGCAAGAGTTGGATAGAGGGTTTCAACAAATAGACAAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.8

Weight (kDa)

4.71

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	338, 473
AloI	GAACNNNNNNTCC	2 cut(s)	65, 97
AluBI	AGCT	5 cut(s)	64, 107, 115, 367, 429
AluI	AGCT	5 cut(s)	64, 107, 115, 367, 429
Alw21I	GWGCWC	1 cut(s)	379
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	387
ApeKI	GCWGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	388
AsuHPI	GGTGA	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	2 cut(s)	17, 51
BciVI	GTATCC	1 cut(s)	142
BfmI	CTRYAG	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	388
BpuEI	CTTGAG	2 cut(s)	260, 312
BsaBI	GATNNNNATC	2 cut(s)	27, 33
BsaWI	WCCGGW	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse8I	GATNNNNATC	2 cut(s)	27, 33
BseJI	GATNNNNATC	2 cut(s)	27, 33
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	385
BseRI	GAGGAG	2 cut(s)	233, 359
BseXI	GCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	38
BsnI	GGCC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	28, 346
BspANI	GGCC	1 cut(s)	389
BspCNI	CTCAG	1 cut(s)	384
BspPI	GGATC	1 cut(s)	23
BspQI	GCTCTTC	1 cut(s)	105
BssMI	GATC	2 cut(s)	28, 346
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	356, 371
BstKTI	GATC	2 cut(s)	31, 349
BstMBI	GATC	2 cut(s)	28, 346
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	116
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	389
BtgZI	GCGATG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	388
CviAII	CATG	1 cut(s)	385
CviJI	RGCY	9 cut(s)	64, 107, 115, 205, 311, 367, 389, 409, 429
CviKI_1	RGCY	9 cut(s)	64, 107, 115, 205, 311, 367, 389, 409, 429
DdeI	CTNAG	2 cut(s)	356, 371
DpnI	GATC	2 cut(s)	30, 348
DpnII	GATC	2 cut(s)	28, 346
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	129
FaeI	CATG	1 cut(s)	388
FatI	CATG	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	389
HapII	CCGG	1 cut(s)	259
Hin1II	CATG	1 cut(s)	388
HinfI	GANTC	2 cut(s)	34, 42
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	1 cut(s)	38
Hpy188I	TCNGA	3 cut(s)	33, 156, 381
Hpy188III	TCNNGA	3 cut(s)	128, 277, 329
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	356, 371
Hsp92II	CATG	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	28, 346
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	124, 372
LpnPI	CCDG	7 cut(s)	129, 192, 216, 272, 325, 357, 395
Lsp1109I	GCAGC	1 cut(s)	116
MalI	GATC	2 cut(s)	30, 348
MboI	GATC	2 cut(s)	28, 346
MboII	GAAGA	3 cut(s)	59, 122, 229
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	5 cut(s)	246, 320, 338, 396, 417
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	7 cut(s)	32, 94, 190, 211, 261, 380, 458
MseI	TTAA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	1 cut(s)	259
NdeII	GATC	2 cut(s)	28, 346
NlaIII	CATG	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	34, 42
PkrI	GCNGC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	28, 346
Sau96I	GGNCC	1 cut(s)	388
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	6 cut(s)	66, 109, 117, 181, 369, 431
SfcI	CTRYAG	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	275, 327
SmoI	CTYRAG	2 cut(s)	275, 327
Sse9I	AATT	5 cut(s)	246, 320, 338, 396, 417
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	37, 45
TasI	AATT	5 cut(s)	246, 320, 338, 396, 417
TfiI	GAWTC	2 cut(s)	34, 42
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.