Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005975.1

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Forward (+)

583 .. 1144

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005975.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggacgctgtcgacttctgcggagggagagtgaagattggtgacgtctccagcagagctgggctcaagctcaatgaggctcagaacgctttgaaggctctcgctgccgacactgagggcttcttggaggtctcggatgaaggcgatgtgctttatgttttccccaaagattatcaagcaaagcttcttgccaaatcgtttcgattgagaattaagcctctgctggagaaagcaagggccgggaccgagtatgtagcgagagtttcatttggaattgccctcattgcctccattattcttgtttatactgcaatcattgttgccctttcttccagtaggaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.34

Weight (kDa)

9.13

Isoelectric Point (pI)

19.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	1 cut(s)	21
AcyI	GRCGYC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	3 cut(s)	59, 70, 184
AluI	AGCT	3 cut(s)	59, 70, 184
Alw26I	GTCTC	2 cut(s)	52, 136
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	237, 243
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	52, 136
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	2 cut(s)	237, 243
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BpmI	CTGGAG	2 cut(s)	34, 245
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	95, 105
BseNI	ACTGG	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	91
BseYI	CCCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	52, 136
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	94, 106
BspLI	GGNNCC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	333
BssNI	GRCGYC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	81, 114
BstF5I	GGATG	1 cut(s)	142
BstMAI	GTCTC	2 cut(s)	52, 136
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 284
BstSCI	CCNGG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	237, 243
CseI	GACGC	1 cut(s)	14
CviJI	RGCY	9 cut(s)	59, 64, 70, 80, 98, 120, 184, 217, 239
CviKI_1	RGCY	9 cut(s)	59, 64, 70, 80, 98, 120, 184, 217, 239
DdeI	CTNAG	2 cut(s)	81, 114
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	52
FaiI	YATR	3 cut(s)	156, 252, 306
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	2 cut(s)	34, 245
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	182
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	84, 136
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	88, 134
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 284
HpyF3I	CTNAG	2 cut(s)	81, 114
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	45
LpnPI	CCDG	4 cut(s)	45, 64, 209, 253
Lsp1109I	GCAGC	1 cut(s)	91
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	41
MboII	GAAGA	2 cut(s)	46, 321
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	2 cut(s)	210, 273
MnlI	CCTC	8 cut(s)	17, 70, 109, 121, 228, 290, 298, 333
MseI	TTAA	1 cut(s)	213
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 284
NciI	CCSGG	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	41
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	237, 243
PsyI	GACNNNGTC	1 cut(s)	8
SalI	GTCGAC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	105
Sau96I	GGNCC	2 cut(s)	237, 243
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	6 cut(s)	48, 61, 72, 132, 186, 344
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	210, 273
SsiI	CCGC	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	239
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	12, 202
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	210, 273
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	153, 255
TspRI	CASTG	1 cut(s)	118
Tth111I	GACNNNGTC	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	12
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.