Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Forward (+)

30468414 .. 30470974

Gene Structure 2561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCATATTATGCAGGGAAACATTCTGTACCAGTTTCCATCTCTACAGCGCACAGCTTCTAGGAAGATGAGAATATGTCCAGAGATTGTTGGAGAAGCTGATAAATTTTTTAAGGAGGAGAAATGGCAATTTAGTAAAATTAGTATTGCTAAGAGAGCAATGGTCGTTGGACTTGGTGGACTCAATGTATTTGGGGTTCTCATTCTGAGAGGCCTATTACAGGATCCTATAGTTGCACAAGTTGGTTTTATCAAGTTTATTACAAGCATAAATCCTCTACTTCAGATTTATGCTGGTTTCTTCTTTGTAATTCCTCTGTTCCGGTGGTTTGTCTTGCTCAAGACAAATGCTGACATAGAAAAAAGAAATCAAGCCAGACAGCAATTTGCTCAAGACATTGAATTGCCTGATCTATCACTAAGACGAAAGCTCCTCAGTGCTCGGAACATGGCCCAAAGAATTGTCATAGGGCTGGACAGAATTGTTTATAGCTCTTGCAAGGATTTGTTTGAACAAGAGTTGGATAGAGGGTTTCAACAGATAGACAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

21.27

Weight (kDa)

9.84

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	218, 231
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	401, 512, 536
AluBI	AGCT	4 cut(s)	56, 98, 430, 492
AluI	AGCT	4 cut(s)	56, 98, 430, 492
Alw21I	GWGCWC	1 cut(s)	442
AlwI	GGATC	2 cut(s)	218, 231
AoxI	GGCC	2 cut(s)	211, 450
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	451
BamHI	GGATCC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	442
BccI	CCATC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	2 cut(s)	44, 228
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	323, 375
BsaWI	WCCGGW	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	197, 448
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	131, 422
BshFI	GGCC	2 cut(s)	213, 452
BsiHKAI	GWGCWC	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	220
BsnI	GGCC	2 cut(s)	213, 452
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	2 cut(s)	223, 409
BspANI	GGCC	2 cut(s)	213, 452
BspCNI	CTCAG	2 cut(s)	198, 447
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	2 cut(s)	218, 231
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	223, 409
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstDEI	CTNAG	4 cut(s)	150, 206, 419, 434
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	2 cut(s)	226, 412
BstMBI	GATC	2 cut(s)	223, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 155
BstSFI	CTRYAG	2 cut(s)	44, 228
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	213, 452
BtsIMutI	CAGTG	1 cut(s)	442
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	448
CviJI	RGCY	8 cut(s)	56, 98, 213, 374, 430, 452, 472, 492
CviKI_1	RGCY	8 cut(s)	56, 98, 213, 374, 430, 452, 472, 492
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	4 cut(s)	150, 206, 419, 434
DpnI	GATC	2 cut(s)	225, 411
DpnII	GATC	2 cut(s)	223, 409
Eco147I	AGGCCT	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	451
FatI	CATG	1 cut(s)	447
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	213, 452
HapII	CCGG	1 cut(s)	322
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	451
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	3 cut(s)	207, 285, 444
Hpy188III	TCNNGA	3 cut(s)	80, 340, 392
Hpy8I	GTNNAC	1 cut(s)	179
HpyCH4V	TGCA	4 cut(s)	4, 13, 236, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 155
HpyF3I	CTNAG	4 cut(s)	150, 206, 419, 434
Hsp92II	CATG	1 cut(s)	451
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	223, 409
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	8 cut(s)	44, 93, 206, 279, 335, 388, 420, 458
MaeI	CTAG	1 cut(s)	60
MalI	GATC	2 cut(s)	225, 411
MboI	GATC	2 cut(s)	223, 409
MboII	GAAGA	2 cut(s)	76, 292
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	8 cut(s)	104, 128, 138, 309, 383, 401, 459, 480
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	3 cut(s)	70, 148, 501
MnlI	CCTC	6 cut(s)	109, 203, 285, 324, 443, 521
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	2 cut(s)	10, 155
NdeII	GATC	2 cut(s)	223, 409
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	1 cut(s)	225
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	213
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	451
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	223, 409
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	442
SetI	ASST	4 cut(s)	58, 100, 432, 494
SfcI	CTRYAG	2 cut(s)	44, 228
SmlI	CTYRAG	2 cut(s)	338, 390
SmoI	CTYRAG	2 cut(s)	338, 390
Sse9I	AATT	8 cut(s)	104, 128, 138, 309, 383, 401, 459, 480
SseBI	AGGCCT	1 cut(s)	213
SspMI	CTAG	1 cut(s)	60
StuI	AGGCCT	1 cut(s)	213
TasI	AATT	8 cut(s)	104, 128, 138, 309, 383, 401, 459, 480
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	442
TspRI	CASTG	1 cut(s)	442
XagI	CCTNNNNNAGG	1 cut(s)	218
XapI	RAATTY	1 cut(s)	104
XspI	CTAG	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.