Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

12363871 .. 12365761

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGTCCATGGCTACGTGCTTCACTCTTCCACCAAACCCTTTCAAAGCTTCACTCTTACGTAACCGTTCCAAGGTTCCAGAATATAGGGCTTCTGCGCCGGTTGTGAGAGCCAACATTGCAGATGAGATCAGGCCCGGCAGCGCCATCGAGAGTGATAAGTTACCTTCGGATGTGAGAAAGCGAGCAATGGAAGCTGTGGGCGCTTGTGGAAGAAGAGTGACTGTTGGTGACGTAGCCGGCAGAGCTGGCCTTAAGCTCTTTGAGGCTCAGAAAGCTTTGCAGGCTCTCGCTTCTGATACTCATGGCTTCTTGGAGGTCTCTGACGAAGGCGATGTACTCTATGTTTTTTCCAAAGATTATAGAGAAAAACTTGTAGGCAAATCGTTCATCATGAGAGTTGAGCCACTGCTTGAGAAGGCAAAGGCTAAGGCTGAGTATTTAGCAAAGGGTTTCAATTGGAATTACTGCTCTGATTACTTCGATCCATTGTTCTTGTGTTCACTGCAATTCTTGTTCCGCCAGACGTGGTTTACTTCTTCTTGCTCTGGTGGAGGAAGCTCATTTCAGTTGGGTTTTGATTCTGCAACTACTATTTATTCCTCTGGTCGTAAAGAATTGTACGTTTTGCTCCTCAGTGCTCGAAACATGGCCGAAAGAACTGTCATAGGGCAGGACAGAATTGTTTATAGCACTGGCAAGGATTTGGTTGATCAAAAGTTGGATAGGTGTTTCAACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.47

Weight (kDa)

9.08

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	520
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	1 cut(s)	651
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	339, 623
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	46, 457, 736
AjiI	CACGTC	1 cut(s)	528
AluBI	AGCT	6 cut(s)	50, 197, 248, 259, 278, 561
AluI	AGCT	6 cut(s)	50, 197, 248, 259, 278, 561
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	479
AoxI	GGCC	3 cut(s)	134, 250, 651
ApeKI	GCWGC	1 cut(s)	141
ArsI	GACNNNNNNTTYG	2 cut(s)	648, 680
AspLEI	GCGC	3 cut(s)	100, 146, 206
AspS9I	GGNCC	1 cut(s)	135
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	242
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	325
BfoI	RGCGCY	2 cut(s)	147, 207
BfrI	CTTAAG	1 cut(s)	254
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	138
BmgBI	CACGTC	1 cut(s)	528
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	138
BsaAI	YACGTR	2 cut(s)	18, 62
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	9, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	2 cut(s)	100, 239
Bse1I	ACTGG	1 cut(s)	700
Bse3DI	GCAATG	2 cut(s)	117, 195
BseDI	CCNNGG	2 cut(s)	9, 72
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	2 cut(s)	117, 195
BseMII	CTCAG	3 cut(s)	284, 426, 649
BseNI	ACTGG	1 cut(s)	700
BseRI	GAGGAG	1 cut(s)	623
BseXI	GCAGC	1 cut(s)	153
BshFI	GGCC	3 cut(s)	136, 252, 653
BsiHKAI	GWGCWC	1 cut(s)	643
BsiSI	CCGG	3 cut(s)	101, 138, 240
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	136, 252, 653
Bso31I	GGTCTC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp143I	GATC	3 cut(s)	129, 484, 712
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	520
BspANI	GGCC	3 cut(s)	136, 252, 653
BspCNI	CTCAG	3 cut(s)	283, 427, 648
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	479
BspTI	CTTAAG	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	325
BsrDI	GCAATG	2 cut(s)	117, 195
BsrFI	RCCGGY	2 cut(s)	100, 239
BsrI	ACTGG	1 cut(s)	700
BssAI	RCCGGY	2 cut(s)	100, 239
BssECI	CCNNGG	2 cut(s)	9, 72
BssMI	GATC	3 cut(s)	129, 484, 712
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	9, 72
Bst4CI	ACNGT	3 cut(s)	68, 226, 664
Bst6I	CTCTTC	2 cut(s)	33, 211
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	254
BstBAI	YACGTR	2 cut(s)	18, 62
BstC8I	GCNNGC	4 cut(s)	186, 241, 250, 285
BstDEI	CTNAG	4 cut(s)	270, 429, 435, 635
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	178
BstH2I	RGCGCY	2 cut(s)	147, 207
BstHHI	GCGC	3 cut(s)	100, 146, 206
BstKTI	GATC	3 cut(s)	132, 487, 715
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	3 cut(s)	129, 484, 712
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 119, 194, 203, 245, 249, 275, 284
BstSCI	CCNGG	1 cut(s)	136
BstSNI	TACGTA	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	136, 252, 653
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	2 cut(s)	407, 503
BtsIMutI	CAGTG	4 cut(s)	407, 503, 643, 693
Cac8I	GCNNGC	4 cut(s)	186, 241, 250, 285
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	3 cut(s)	100, 146, 206
Cfr10I	RCCGGY	2 cut(s)	100, 239
Cfr13I	GGNCC	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	338, 622
CviAII	CATG	4 cut(s)	10, 305, 394, 649
CviQI	GTAC	2 cut(s)	338, 622
DdeI	CTNAG	4 cut(s)	270, 429, 435, 635
DpnI	GATC	3 cut(s)	131, 486, 714
DpnII	GATC	3 cut(s)	129, 484, 712
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	2 cut(s)	33, 211
EarI	CTCTTC	2 cut(s)	33, 211
EciI	GGCGGA	1 cut(s)	509
Eco105I	TACGTA	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	9, 72
Eco31I	GGTCTC	1 cut(s)	325
EcoT14I	CCWWGG	2 cut(s)	9, 72
ErhI	CCWWGG	2 cut(s)	9, 72
FaeI	CATG	4 cut(s)	13, 308, 397, 652
FaiI	YATR	9 cut(s)	11, 87, 306, 345, 363, 395, 650, 668, 690
FatI	CATG	4 cut(s)	9, 304, 393, 648
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	142
GlaI	GCGC	3 cut(s)	99, 145, 205
GluI	GCNGC	1 cut(s)	142
HaeII	RGCGCY	2 cut(s)	147, 207
HaeIII	GGCC	3 cut(s)	136, 252, 653
HapII	CCGG	3 cut(s)	101, 138, 240
HhaI	GCGC	3 cut(s)	100, 146, 206
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	13, 308, 397, 652
Hin6I	GCGC	3 cut(s)	98, 144, 204
HinP1I	GCGC	3 cut(s)	98, 144, 204
HindIII	AAGCTT	2 cut(s)	48, 276
HinfI	GANTC	1 cut(s)	581
HpaII	CCGG	3 cut(s)	101, 138, 240
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	503, 534
Hpy188I	TCNGA	5 cut(s)	172, 273, 298, 325, 475
Hpy188III	TCNNGA	3 cut(s)	80, 151, 394
Hpy8I	GTNNAC	2 cut(s)	503, 534
HpyAV	CCTTC	3 cut(s)	177, 323, 412
HpyCH4III	ACNGT	3 cut(s)	68, 226, 664
HpyCH4IV	ACGT	5 cut(s)	17, 61, 234, 527, 624
HpyCH4V	TGCA	4 cut(s)	122, 283, 508, 587
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 119, 194, 203, 245, 249, 275, 284
HpyF3I	CTNAG	4 cut(s)	270, 429, 435, 635
HpySE526I	ACGT	5 cut(s)	17, 61, 234, 527, 624
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	13, 308, 397, 652
HspAI	GCGC	3 cut(s)	98, 144, 204
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	3 cut(s)	129, 484, 712
LmnI	GCTCC	1 cut(s)	636
Lsp1109I	GCAGC	1 cut(s)	153
MaeII	ACGT	5 cut(s)	17, 61, 234, 527, 624
MaeIII	GTNAC	4 cut(s)	62, 162, 220, 230
MalI	GATC	3 cut(s)	131, 486, 714
MboI	GATC	3 cut(s)	129, 484, 712
MboII	GAAGA	4 cut(s)	20, 225, 228, 531
MfeI	CAATTG	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	643
MluCI	AATT	5 cut(s)	457, 463, 509, 617, 681
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	5 cut(s)	259, 310, 548, 613, 644
MroNI	GCCGGC	1 cut(s)	239
MseI	TTAA	1 cut(s)	255
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	3 cut(s)	101, 138, 240
MspR9I	CCNGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	457
MwoI	GCNNNNNNNGC	8 cut(s)	11, 119, 194, 203, 245, 249, 275, 284
NaeI	GCCGGC	1 cut(s)	241
NciI	CCSGG	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	3 cut(s)	129, 484, 712
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	4 cut(s)	13, 308, 397, 652
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	220, 230
PagI	TCATGA	1 cut(s)	393
PdiI	GCCGGC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	581
PkrI	GCNGC	1 cut(s)	143
Ppu21I	YACGTR	2 cut(s)	18, 62
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	135
RsaI	GTAC	2 cut(s)	339, 623
RsaNI	GTAC	2 cut(s)	338, 622
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	3 cut(s)	129, 484, 712
Sau96I	GGNCC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	643
SmlI	CTYRAG	2 cut(s)	254, 413
SmoI	CTYRAG	2 cut(s)	254, 413
SnaBI	TACGTA	1 cut(s)	62
Sse9I	AATT	5 cut(s)	457, 463, 509, 617, 681
SsiI	CCGC	1 cut(s)	520
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	2 cut(s)	9, 72
TaaI	ACNGT	3 cut(s)	68, 226, 664
TaiI	ACGT	5 cut(s)	20, 64, 237, 530, 627
TaqI	TCGA	3 cut(s)	150, 483, 643
TasI	AATT	5 cut(s)	457, 463, 509, 617, 681
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	4 cut(s)	414, 510, 643, 700
TseFI	GTSAC	2 cut(s)	220, 230
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	2 cut(s)	220, 230
TspDTI	ATGAA	1 cut(s)	379
TspRI	CASTG	4 cut(s)	414, 510, 643, 700
Vha464I	CTTAAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.