Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

11001841 .. 11002901

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0134500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGGGCTCTTCCAAGAGAGGTTTGGTGGGTAGATGGTGATAGACTGTCCCTTGTTCCAGCCTCAGAACAAAGAAAGCTTTTCAGTGGGGATTGCTACATTCTGCAATATACATATCTTGGCAACGAAAGGGATGAGAATCTATTTTATGCATGGCTTGGTGGTGGGAGTGTAATGGGAGGCAGGAGTCAACGATACAAGAAGTTTGTGGTAGAAAAGGGTATTGCAGATGAAACTTATGATGACAGCAAGACAGCTCGTTTTCGTGTTCAAGGGACAAGTCCTAATAACATGCAGGCCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.61

Weight (kDa)

7.82

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	2 cut(s)	79, 257
AluI	AGCT	2 cut(s)	79, 257
AoxI	GGCC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	10
BccI	CCATC	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	138
Bse8I	GATNNNNATC	1 cut(s)	138
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	299
BslFI	GGGAC	2 cut(s)	34, 289
BsmFI	GGGAC	2 cut(s)	34, 289
BsnI	GGCC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	77
BspQI	GCTCTTC	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	297
CviAII	CATG	2 cut(s)	153, 292
CviJI	RGCY	6 cut(s)	8, 62, 79, 157, 257, 299
CviKI_1	RGCY	6 cut(s)	8, 62, 79, 157, 257, 299
DdeI	CTNAG	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	2 cut(s)	156, 295
FaiI	YATR	8 cut(s)	111, 115, 150, 154, 240, 293, 302, 304
FaqI	GGGAC	2 cut(s)	34, 289
FatI	CATG	2 cut(s)	152, 291
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	156, 295
HincII	GTYRAC	1 cut(s)	191
HindII	GTYRAC	1 cut(s)	191
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	2 cut(s)	139, 187
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	106, 152, 227, 295
HpyF3I	CTNAG	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	156, 295
LguI	GCTCTTC	1 cut(s)	15
LpnPI	CCDG	3 cut(s)	72, 169, 281
MhlI	GDGCHC	1 cut(s)	10
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	3 cut(s)	13, 73, 173
Mph1103I	ATGCAT	1 cut(s)	154
NlaIII	CATG	2 cut(s)	156, 295
NsiI	ATGCAT	1 cut(s)	154
NspI	RCATGY	1 cut(s)	295
PciSI	GCTCTTC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	3 cut(s)	24, 81, 259
TaaI	ACNGT	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	139
TscAI	CASTG	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	91
XceI	RCATGY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.