Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Forward (+)

10994417 .. 10996034

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0134300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGTCTTCTACAAAAGCAAGATCAGAAACCATTCAAAATCACTTCAAATACCGGAACTTTTTAGTTTTCCCCACAAATGGTCTCTCTATGATCAGTCTAGCTCTTTGTTGCTCCATCGCTTCAATTTCACTCGTTTTCTACTCTGCTTTCTCTAATCAATCCCTTTCTTTCAATTCTCTAAACCACAAAATAGACGCCAATTGCTTCAACCCCCGCAAAGTTGATGGTTTCGAAAAGACAAACATATCCCACATTCTTTTTGGCATCGGGGGATCCAGGAATTTGTGGAATAAACGCATACACTACATTGAGCTGTGGTGGAAGCCTAGCATCACCCGCGGGTTCGTTTGGTTTGACCATAAACCCTTCTCTAACATGACGTGGACAGAGACCTTGCCACAGTACAAAGTCTCCAAGGACACATCACGGTTCAATTACACCTGCTGGTACGGCTCACGGTCTGCGATTCGCATGGCGAGAATCGTGAAGGAGAGTTTCGAGTTAGGGTTGGAGAATATAAGATGGTTCGTTATGGGAGACGATGACACGGTGTTCTTCACCGACAACTTAGTTACGGTGTTAGCGAAATACGACCACAATCAGATGTACTACATTGGCGCTAATTCCGAGAGTGTGGAACAAGATATGGAACACTCGTACGCTACGGCCTACGGTGGTGCTGGGTTTGCTATAAGCTACCCATTAGCGGTTGAGCTGGTTAGGATTTTGGACGGGTGTATTAATCGATATCATGAGTTTTACGGCTCAGATTCAAAGATCCAGGGTTGTTTGAGTGAGATTGGGGTGCCCTTGACAAAAGAGCTAGGGTTTCACCAGATGGATATACGAGGGCTTCCGTATGGTTTACTAGCGGCACACCCGGTGGCCCCATTAGTCTCACTTCACCACCTGGACGACGTCCTACCAATATTTCCGAGCCAAACCCGGATGGAGTCCTTGAAGAGGCTAATTAGCGGGTATGAAGTGGATCCGGGTCGGACCCTGCAGCACAGTTTTTGCTATGACCTGAGGCGTAATTGGTCGGTTTCAGTGTCATGGGGTTACACTGTGATGTTATATCCGTCGTTAGTGACCGCTAAGAAGCTGGAAACGGCATTTCAAACGTTCCTGACATGGGGAAGTCGGCATGGAGGACCTTTCACGTTTAACACCCGAACCGTGAGCTTGGATCCCTGTGAGAGTCCGCTGGTGTATTTATTGGATCGGGTTGAGAGCGTTGGTGGGGATGAGACCTTGACTACATATAACAGGTACTTGCCCTGGTGGAACAATCAAGGGGAATGCCGGCATTGTGATTGCACCCCTGCCTTGGCTGTTGAGTTTTTCAACGTTTCAGCTTCCAAGTTTAGCCCTGACTTGTGGAACAAGGGTCCACGTAGACAATGTTGCGAGATCATCAATGGCAGCGATGGAGTTAATAGCATGGTACAGGTCCAAATTAGAGACTGCATGCACTTTGAGAGTGTGACTCCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

499

Amino Acids

56.97

Weight (kDa)

6.76

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fringe	PF02434	79 - 279	2.4e-13	Fringe-like
DUF604	PF04646	214 - 470	1.6e-99	Protein of unknown function, DUF604

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	449
AatII	GACGTC	1 cut(s)	921
Acc36I	ACCTGC	1 cut(s)	449
AccB1I	GGYRCC	1 cut(s)	805
AccI	GTMKAC	1 cut(s)	1399
AccII	CGCG	1 cut(s)	339
AciI	CCGC	8 cut(s)	214, 337, 339, 707, 872, 975, 1095, 1205
AclI	AACGTT	2 cut(s)	1124, 1350
AclWI	GGATC	8 cut(s)	267, 280, 772, 983, 996, 1184, 1197, 1230
AcsI	RAATTY	1 cut(s)	280
AcyI	GRCGYC	2 cut(s)	195, 918
AdeI	CACNNNGTG	1 cut(s)	883
AfaI	GTAC	6 cut(s)	404, 449, 608, 659, 1274, 1449
AfiI	CCNNNNNNNGG	5 cut(s)	77, 706, 963, 1135, 1330
AjiI	CACGTC	1 cut(s)	381
AjnI	CCWGG	4 cut(s)	275, 780, 909, 1280
AluBI	AGCT	8 cut(s)	101, 313, 696, 715, 823, 1105, 1185, 1358
AluI	AGCT	8 cut(s)	101, 313, 696, 715, 823, 1105, 1185, 1358
Alw26I	GTCTC	7 cut(s)	86, 383, 415, 531, 901, 1244, 1458
AlwI	GGATC	8 cut(s)	267, 280, 772, 983, 996, 1184, 1197, 1230
AoxI	GGCC	2 cut(s)	666, 885
ApeKI	GCWGC	2 cut(s)	1006, 1425
ApoI	RAATTY	1 cut(s)	280
AseI	ATTAAT	1 cut(s)	741
Asp700I	GAANNNNTTC	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	620
AspS9I	GGNCC	5 cut(s)	886, 999, 1154, 1391, 1453
AsuC2I	CCSGG	3 cut(s)	881, 946, 993
AsuHPI	GGTGA	4 cut(s)	325, 550, 824, 896
AsuII	TTCGAA	1 cut(s)	231
AvaII	GGWCC	4 cut(s)	999, 1154, 1391, 1453
AxyI	CCTNAGG	1 cut(s)	1028
BaeGI	GKGCMC	1 cut(s)	810
BamHI	GGATCC	3 cut(s)	272, 988, 1189
BanI	GGYRCC	1 cut(s)	805
BbvI	GCAGC	2 cut(s)	1018, 1437
BccI	CCATC	6 cut(s)	122, 218, 516, 832, 943, 1424
BceAI	ACGGC	4 cut(s)	466, 681, 778, 1128
BciT130I	CCWGG	4 cut(s)	277, 782, 911, 1282
BclI	TGATCA	1 cut(s)	90
BcnI	CCSGG	3 cut(s)	881, 946, 993
BcoDI	GTCTC	7 cut(s)	86, 383, 415, 531, 901, 1244, 1458
BfaI	CTAG	4 cut(s)	98, 327, 824, 869
BfmI	CTRYAG	1 cut(s)	1004
BfoI	RGCGCY	1 cut(s)	621
BfuAI	ACCTGC	1 cut(s)	449
BisI	GCNGC	3 cut(s)	873, 1007, 1426
BlsI	GCNGC	3 cut(s)	874, 1008, 1427
Bme1390I	CCNGG	7 cut(s)	277, 782, 881, 911, 946, 993, 1282
Bme18I	GGWCC	4 cut(s)	999, 1154, 1391, 1453
BmgBI	CACGTC	1 cut(s)	381
BmgT120I	GGNCC	5 cut(s)	886, 999, 1154, 1391, 1453
BmiI	GGNNCC	7 cut(s)	274, 807, 888, 990, 1001, 1191, 1392
BmrFI	CCNGG	7 cut(s)	277, 782, 881, 911, 946, 993, 1282
BmsI	GCATC	2 cut(s)	273, 339
BplI	GAGNNNNNCTC	1 cut(s)	1474
Bpu14I	TTCGAA	1 cut(s)	231
BpuMI	CCSGG	3 cut(s)	881, 946, 993
Bsa29I	ATCGAT	1 cut(s)	745
BsaAI	YACGTR	1 cut(s)	1397
BsaHI	GRCGYC	2 cut(s)	195, 918
BsaI	GGTCTC	3 cut(s)	86, 383, 1244
BsaJI	CCNNGG	5 cut(s)	337, 414, 781, 1280, 1329
BsaWI	WCCGGW	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	5 cut(s)	77, 706, 963, 1135, 1330
Bse118I	RCCGGY	1 cut(s)	1305
Bse21I	CCTNAGG	1 cut(s)	1028
BseBI	CCWGG	4 cut(s)	277, 782, 911, 1282
BseCI	ATCGAT	1 cut(s)	745
BseDI	CCNNGG	5 cut(s)	337, 414, 781, 1280, 1329
BseGI	GGATG	2 cut(s)	954, 1252
BseLI	CCNNNNNNNGG	5 cut(s)	77, 706, 963, 1135, 1330
BseMII	CTCAG	2 cut(s)	780, 1019
BseRI	GAGGAG	1 cut(s)	1482
BseSI	GKGCMC	1 cut(s)	810
BseXI	GCAGC	2 cut(s)	1018, 1437
BseYI	CCCAGC	1 cut(s)	680
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	668, 887
BshNI	GGYRCC	1 cut(s)	805
BshVI	ATCGAT	1 cut(s)	745
BsiSI	CCGG	5 cut(s)	52, 881, 946, 992, 1306
BsiWI	CGTACG	1 cut(s)	657
BslI	CCNNNNNNNGG	5 cut(s)	77, 706, 963, 1135, 1330
BsmAI	GTCTC	7 cut(s)	86, 383, 415, 531, 901, 1244, 1458
BsmBI	CGTCTC	1 cut(s)	531
BsmI	GAATGC	1 cut(s)	1307
BsnI	GGCC	2 cut(s)	668, 887
Bso31I	GGTCTC	3 cut(s)	86, 383, 1244
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	810
Bsp143I	GATC	8 cut(s)	20, 90, 272, 777, 988, 1189, 1222, 1413
BspACI	CCGC	8 cut(s)	214, 337, 339, 707, 872, 975, 1095, 1205
BspANI	GGCC	2 cut(s)	668, 887
BspCNI	CTCAG	2 cut(s)	779, 1020
BspDI	ATCGAT	1 cut(s)	745
BspFNI	CGCG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	7 cut(s)	274, 807, 888, 990, 1001, 1191, 1392
BspMAI	CTGCAG	1 cut(s)	1008
BspMI	ACCTGC	1 cut(s)	449
BspPI	GGATC	8 cut(s)	267, 280, 772, 983, 996, 1184, 1197, 1230
BspT104I	TTCGAA	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	805
BspTNI	GGTCTC	3 cut(s)	86, 383, 1244
BsrFI	RCCGGY	1 cut(s)	1305
BssAI	RCCGGY	1 cut(s)	1305
BssECI	CCNNGG	5 cut(s)	337, 414, 781, 1280, 1329
BssMI	GATC	8 cut(s)	20, 90, 272, 777, 988, 1189, 1222, 1413
BssNI	GRCGYC	2 cut(s)	195, 918
BssT1I	CCWWGG	2 cut(s)	414, 1329
Bst2UI	CCWGG	4 cut(s)	277, 782, 911, 1282
Bst4CI	ACNGT	9 cut(s)	402, 429, 459, 550, 577, 674, 1013, 1069, 1180
Bst6I	CTCTTC	1 cut(s)	956
BstACI	GRCGYC	2 cut(s)	195, 918
BstBAI	YACGTR	1 cut(s)	1397
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	1307, 1472
BstDEI	CTNAG	4 cut(s)	568, 766, 1028, 1098
BstDSI	CCRYGG	1 cut(s)	337
BstENI	CCTNNNNNAGG	1 cut(s)	961
BstF5I	GGATG	2 cut(s)	954, 1252
BstFNI	CGCG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	621
BstHHI	GCGC	1 cut(s)	620
BstKTI	GATC	8 cut(s)	23, 93, 275, 780, 991, 1192, 1225, 1416
BstMAI	GTCTC	7 cut(s)	86, 383, 415, 531, 901, 1244, 1458
BstMBI	GATC	8 cut(s)	20, 90, 272, 777, 988, 1189, 1222, 1413
BstMWI	GCNNNNNNNGC	3 cut(s)	336, 450, 686
BstNI	CCWGG	4 cut(s)	277, 782, 911, 1282
BstNSI	RCATGY	1 cut(s)	1474
BstSCI	CCNGG	7 cut(s)	275, 780, 879, 909, 944, 991, 1280
BstSFI	CTRYAG	1 cut(s)	1004
BstSLI	GKGCMC	1 cut(s)	810
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	1018, 1437
BstX2I	RGATCY	4 cut(s)	272, 777, 988, 1189
BstYI	RGATCY	4 cut(s)	272, 777, 988, 1189
Bsu15I	ATCGAT	1 cut(s)	745
Bsu36I	CCTNAGG	1 cut(s)	1028
BsuRI	GGCC	2 cut(s)	668, 887
BsuTUI	ATCGAT	1 cut(s)	745
BtgI	CCRYGG	1 cut(s)	337
BtgZI	GCGATG	2 cut(s)	100, 1443
BtrI	CACGTC	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	954, 1252
BtsIMutI	CAGTG	2 cut(s)	1056, 1065
BveI	ACCTGC	1 cut(s)	449
Cac8I	GCNNGC	2 cut(s)	1307, 1472
CciI	TCATGA	1 cut(s)	751
CfoI	GCGC	1 cut(s)	620
Cfr10I	RCCGGY	1 cut(s)	1305
Cfr13I	GGNCC	5 cut(s)	886, 999, 1154, 1391, 1453
Cfr42I	CCGCGG	1 cut(s)	340
ClaI	ATCGAT	1 cut(s)	745
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	6 cut(s)	403, 448, 607, 658, 1273, 1448
CviAII	CATG	8 cut(s)	376, 472, 752, 1056, 1134, 1148, 1444, 1471
CviQI	GTAC	6 cut(s)	403, 448, 607, 658, 1273, 1448
DdeI	CTNAG	4 cut(s)	568, 766, 1028, 1098
DpnI	GATC	8 cut(s)	22, 92, 274, 779, 990, 1191, 1224, 1415
DpnII	GATC	8 cut(s)	20, 90, 272, 777, 988, 1189, 1222, 1413
DraIII	CACNNNGTG	1 cut(s)	883
Eam1104I	CTCTTC	1 cut(s)	956
EarI	CTCTTC	1 cut(s)	956
Eco130I	CCWWGG	2 cut(s)	414, 1329
Eco31I	GGTCTC	3 cut(s)	86, 383, 1244
Eco32I	GATATC	1 cut(s)	749
Eco47I	GGWCC	4 cut(s)	999, 1154, 1391, 1453
Eco81I	CCTNAGG	1 cut(s)	1028
EcoNI	CCTNNNNNAGG	1 cut(s)	961
EcoO109I	RGGNCCY	1 cut(s)	1154
EcoRII	CCWGG	4 cut(s)	275, 780, 909, 1280
EcoRV	GATATC	1 cut(s)	749
EcoT14I	CCWWGG	2 cut(s)	414, 1329
ErhI	CCWWGG	2 cut(s)	414, 1329
Esp3I	CGTCTC	1 cut(s)	531
FaeI	CATG	8 cut(s)	379, 475, 755, 1059, 1137, 1151, 1447, 1474
FatI	CATG	8 cut(s)	375, 471, 751, 1055, 1133, 1147, 1443, 1470
FauI	CCCGC	4 cut(s)	221, 332, 344, 968
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	1399
Fnu4HI	GCNGC	3 cut(s)	873, 1007, 1426
FokI	GGATG	2 cut(s)	961, 1259
Fsp4HI	GCNGC	3 cut(s)	873, 1007, 1426
FspBI	CTAG	4 cut(s)	98, 327, 824, 869
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	3 cut(s)	873, 1007, 1426
GsaI	CCCAGC	1 cut(s)	684
HaeII	RGCGCY	1 cut(s)	621
HaeIII	GGCC	2 cut(s)	668, 887
HapII	CCGG	5 cut(s)	52, 881, 946, 992, 1306
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	620
Hin1I	GRCGYC	2 cut(s)	195, 918
Hin1II	CATG	8 cut(s)	379, 475, 755, 1059, 1137, 1151, 1447, 1474
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HinfI	GANTC	6 cut(s)	466, 480, 770, 953, 1201, 1489
HpaII	CCGG	5 cut(s)	52, 881, 946, 992, 1306
HphI	GGTGA	4 cut(s)	325, 550, 824, 896
Hpy166II	GTNNAC	4 cut(s)	384, 866, 1394, 1400
Hpy188I	TCNGA	6 cut(s)	25, 603, 628, 769, 936, 999
Hpy188III	TCNNGA	3 cut(s)	484, 752, 1129
Hpy8I	GTNNAC	4 cut(s)	384, 866, 1394, 1400
Hpy99I	CGWCG	2 cut(s)	920, 1087
HpyAV	CCTTC	2 cut(s)	376, 481
HpyCH4III	ACNGT	9 cut(s)	402, 429, 459, 550, 577, 674, 1013, 1069, 1180
HpyCH4IV	ACGT	6 cut(s)	380, 918, 1124, 1163, 1350, 1396
HpyCH4V	TGCA	4 cut(s)	1006, 1320, 1470, 1474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	336, 450, 686
HpyF3I	CTNAG	4 cut(s)	568, 766, 1028, 1098
HpySE526I	ACGT	6 cut(s)	380, 918, 1124, 1163, 1350, 1396
Hsp92I	GRCGYC	2 cut(s)	195, 918
Hsp92II	CATG	8 cut(s)	379, 475, 755, 1059, 1137, 1151, 1447, 1474
HspAI	GCGC	1 cut(s)	618
KroI	GCCGGC	1 cut(s)	1305
KroNI	GCCGGC	1 cut(s)	1307
Ksp22I	TGATCA	1 cut(s)	90
KspI	CCGCGG	1 cut(s)	340
Kzo9I	GATC	8 cut(s)	20, 90, 272, 777, 988, 1189, 1222, 1413
LmnI	GCTCC	1 cut(s)	116
Lsp1109I	GCAGC	2 cut(s)	1018, 1437
LweI	GCATC	2 cut(s)	273, 339
MaeI	CTAG	4 cut(s)	98, 327, 824, 869
MaeII	ACGT	6 cut(s)	380, 918, 1124, 1163, 1350, 1396
MaeIII	GTNAC	4 cut(s)	571, 1061, 1090, 1486
MalI	GATC	8 cut(s)	22, 92, 274, 779, 990, 1191, 1224, 1415
MboI	GATC	8 cut(s)	20, 90, 272, 777, 988, 1189, 1222, 1413
MboII	GAAGA	2 cut(s)	547, 973
MfeI	CAATTG	1 cut(s)	199
MflI	RGATCY	4 cut(s)	272, 777, 988, 1189
MhlI	GDGCHC	1 cut(s)	810
MluCI	AATT	9 cut(s)	123, 172, 199, 280, 433, 622, 969, 1036, 1458
MlyI	GAGTC	3 cut(s)	962, 1210, 1483
MmeI	TCCRAC	2 cut(s)	489, 977
MnlI	CCTC	4 cut(s)	842, 957, 1023, 1145
MroNI	GCCGGC	1 cut(s)	1305
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	3 cut(s)	741, 1167, 1437
MslI	CAYNNNNRTG	1 cut(s)	1070
MspA1I	CMGCKG	2 cut(s)	339, 1207
MspI	CCGG	5 cut(s)	52, 881, 946, 992, 1306
MspR9I	CCNGG	7 cut(s)	277, 782, 881, 911, 946, 993, 1282
MunI	CAATTG	1 cut(s)	199
Mva1269I	GAATGC	1 cut(s)	1307
MvaI	CCWGG	4 cut(s)	277, 782, 911, 1282
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	336, 450, 686
NaeI	GCCGGC	1 cut(s)	1307
NciI	CCSGG	3 cut(s)	881, 946, 993
NdeII	GATC	8 cut(s)	20, 90, 272, 777, 988, 1189, 1222, 1413
NgoMIV	GCCGGC	1 cut(s)	1305
NlaIII	CATG	8 cut(s)	379, 475, 755, 1059, 1137, 1151, 1447, 1474
NlaIV	GGNNCC	7 cut(s)	274, 807, 888, 990, 1001, 1191, 1392
NmuCI	GTSAC	2 cut(s)	1090, 1486
NspI	RCATGY	1 cut(s)	1474
NspV	TTCGAA	1 cut(s)	231
PaeI	GCATGC	1 cut(s)	1474
PagI	TCATGA	1 cut(s)	751
PaqCI	CACCTGC	1 cut(s)	449
PcsI	WCGNNNNNNNCGW	1 cut(s)	581
PctI	GAATGC	1 cut(s)	1307
PdiI	GCCGGC	1 cut(s)	1307
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	466, 480, 770
Pfl23II	CGTACG	1 cut(s)	657
PflFI	GACNNNGTC	1 cut(s)	917
PfoI	TCCNGGA	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	874, 1008, 1427
PleI	GAGTC	3 cut(s)	961, 1209, 1483
PpsI	GAGTC	3 cut(s)	961, 1209, 1483
Ppu21I	YACGTR	1 cut(s)	1397
PpuMI	RGGWCCY	1 cut(s)	1154
PshBI	ATTAAT	1 cut(s)	741
Psp1406I	AACGTT	2 cut(s)	1124, 1350
Psp5II	RGGWCCY	1 cut(s)	1154
Psp6I	CCWGG	4 cut(s)	275, 780, 909, 1280
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	4 cut(s)	275, 780, 909, 1280
PspLI	CGTACG	1 cut(s)	657
PspN4I	GGNNCC	7 cut(s)	274, 807, 888, 990, 1001, 1191, 1392
PspPI	GGNCC	5 cut(s)	886, 999, 1154, 1391, 1453
PspPPI	RGGWCCY	1 cut(s)	1154
PstI	CTGCAG	1 cut(s)	1008
PsuI	RGATCY	4 cut(s)	272, 777, 988, 1189
PsyI	GACNNNGTC	1 cut(s)	917
RsaI	GTAC	6 cut(s)	404, 449, 608, 659, 1274, 1449
RsaNI	GTAC	6 cut(s)	403, 448, 607, 658, 1273, 1448
RseI	CAYNNNNRTG	1 cut(s)	1070
SacII	CCGCGG	1 cut(s)	340
SaqAI	TTAA	3 cut(s)	741, 1167, 1437
SatI	GCNGC	3 cut(s)	873, 1007, 1426
Sau3AI	GATC	8 cut(s)	20, 90, 272, 777, 988, 1189, 1222, 1413
Sau96I	GGNCC	5 cut(s)	886, 999, 1154, 1391, 1453
SchI	GAGTC	3 cut(s)	962, 1210, 1483
ScrFI	CCNGG	7 cut(s)	277, 782, 881, 911, 946, 993, 1282
SduI	GDGCHC	1 cut(s)	810
SfaNI	GCATC	2 cut(s)	273, 339
SfcI	CTRYAG	1 cut(s)	1004
Sfr303I	CCGCGG	1 cut(s)	340
SfuI	TTCGAA	1 cut(s)	231
SgrBI	CCGCGG	1 cut(s)	340
SinI	GGWCC	4 cut(s)	999, 1154, 1391, 1453
SmiMI	CAYNNNNRTG	1 cut(s)	1070
SphI	GCATGC	1 cut(s)	1474
Sse9I	AATT	9 cut(s)	123, 172, 199, 280, 433, 622, 969, 1036, 1458
SsiI	CCGC	8 cut(s)	214, 337, 339, 707, 872, 975, 1095, 1205
SspI	AATATT	1 cut(s)	930
SspMI	CTAG	4 cut(s)	98, 327, 824, 869
StyD4I	CCNGG	7 cut(s)	275, 780, 879, 909, 944, 991, 1280
StyI	CCWWGG	2 cut(s)	414, 1329
TaaI	ACNGT	9 cut(s)	402, 429, 459, 550, 577, 674, 1013, 1069, 1180
TaiI	ACGT	6 cut(s)	383, 921, 1127, 1166, 1353, 1399
TaqI	TCGA	3 cut(s)	231, 498, 745
TasI	AATT	9 cut(s)	123, 172, 199, 280, 433, 622, 969, 1036, 1458
TatI	WGTACW	2 cut(s)	402, 606
TauI	GCSGC	1 cut(s)	875
TfiI	GAWTC	3 cut(s)	466, 480, 770
Tru1I	TTAA	3 cut(s)	741, 1167, 1437
Tru9I	TTAA	3 cut(s)	741, 1167, 1437
TscAI	CASTG	2 cut(s)	1056, 1072
TseFI	GTSAC	2 cut(s)	1090, 1486
TseI	GCWGC	2 cut(s)	1006, 1425
Tsp45I	GTSAC	2 cut(s)	1090, 1486
TspDTI	ATGAA	1 cut(s)	996
TspGWI	ACGGA	2 cut(s)	846, 1071
TspRI	CASTG	2 cut(s)	1056, 1072
Tth111I	GACNNNGTC	1 cut(s)	917
VpaK11BI	GGWCC	4 cut(s)	999, 1154, 1391, 1453
VspI	ATTAAT	1 cut(s)	741
XagI	CCTNNNNNAGG	1 cut(s)	961
XapI	RAATTY	1 cut(s)	280
XceI	RCATGY	1 cut(s)	1474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	1399
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	4 cut(s)	98, 327, 824, 869
ZraI	GACGTC	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.