Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

36375276 .. 36377324

Gene Structure 2049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018798

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGGCTTAGAAAGCTTTGCAGGCTCTTGCTGCCGACACTGAGGGCTTCTTGGAGATGGTCTCAACAGGTCTCGGATGAAGGCGATCTGCTTTATGTTTTCCCCAAAGATTATCGAGCAAAGCTTCTTGCCAAATCGTTTCGATTAAGAATTGAGCCTCTGCTGGAGAAAGCAAAGGCTGGGACCAAGTATGTAGTGAGGGTTTCATTTGGAACTGCCCTCATCGCCTCCATTGTTCTTGTTTATACTACAATCATTGTTGCCCTTTCTTCCAGTAGGAGCAAGAAGATTGATTATAATGCTTTGGTTACAACGAGGATGACAATCGTGGACGACGTGGAAGATCATATGATTCGGGTTATGGGTGACTATGATTATGTATTTTCTGAGAATGGTCTTGTGGCTCACAAAGATGTGAAGCTCATTTGCACCCAGGATCCACAACAGTGTTGTCATGTTGTTCATGAAGAAGACGATGACCAAGGTGAGGTTTACATTGATGAAGCTGACATCCTTAACGAAGTTGATTTCGATGAGGAAGATCTTCCTGATGCAGACGACCAAGTAGTTGGTACATCATCGTTTGGCATACAATTCCTTATTTATGATCTTTTTCTTTCGCTTGCTCTCGAGTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.29

Weight (kDa)

4.68

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AclWI	GGATC	2 cut(s)	431, 444
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	1 cut(s)	487
AjiI	CACGTC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	432
AleI	CACNNNNGTG	1 cut(s)	445
AluBI	AGCT	4 cut(s)	16, 124, 421, 506
AluI	AGCT	4 cut(s)	16, 124, 421, 506
Alw26I	GTCTC	2 cut(s)	66, 76
AlwI	GGATC	2 cut(s)	431, 444
Ama87I	CYCGRG	1 cut(s)	629
ApeKI	GCWGC	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	543
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	377, 497
AvaI	CYCGRG	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	183
BamHI	GGATCC	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	66, 76
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	629
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	2 cut(s)	184, 438
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	477
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpmI	CTGGAG	1 cut(s)	185
BsaBI	GATNNNNATC	1 cut(s)	323
BsaI	GGTCTC	2 cut(s)	66, 76
BsaJI	CCNNGG	2 cut(s)	432, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	432, 481
BseGI	GGATG	3 cut(s)	82, 324, 510
BseJI	GATNNNNATC	1 cut(s)	323
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	2 cut(s)	32, 378
BseNI	ACTGG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	18
BseYI	CCCAGC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	629
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	2 cut(s)	66, 76
BsmFI	GGGAC	1 cut(s)	196
Bso31I	GGTCTC	2 cut(s)	66, 76
BsoBI	CYCGRG	1 cut(s)	629
Bsp143I	GATC	5 cut(s)	85, 343, 436, 541, 607
BspCNI	CTCAG	2 cut(s)	33, 379
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	184, 438
BspPI	GGATC	2 cut(s)	431, 444
BspTNI	GGTCTC	2 cut(s)	66, 76
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	432, 481
BssMI	GATC	5 cut(s)	85, 343, 436, 541, 607
BssT1I	CCWWGG	1 cut(s)	481
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	447
BstC8I	GCNNGC	2 cut(s)	23, 624
BstDEI	CTNAG	3 cut(s)	8, 41, 387
BstF5I	GGATG	3 cut(s)	82, 324, 510
BstKTI	GATC	5 cut(s)	88, 346, 439, 544, 610
BstMAI	GTCTC	2 cut(s)	66, 76
BstMBI	GATC	5 cut(s)	85, 343, 436, 541, 607
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 22, 31, 224
BstNI	CCWGG	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	2 cut(s)	436, 541
BstXI	CCANNNNNNTGG	1 cut(s)	569
BstYI	RGATCY	2 cut(s)	436, 541
BtgZI	GCGATG	1 cut(s)	208
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	82, 324, 510
BtsIMutI	CAGTG	2 cut(s)	38, 452
Cac8I	GCNNGC	2 cut(s)	23, 624
CciI	TCATGA	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	2 cut(s)	455, 464
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	3 cut(s)	8, 41, 387
DpnI	GATC	5 cut(s)	87, 345, 438, 543, 609
DpnII	GATC	5 cut(s)	85, 343, 436, 541, 607
Eco130I	CCWWGG	1 cut(s)	481
Eco31I	GGTCTC	2 cut(s)	66, 76
Eco47I	GGWCC	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	432
EcoT14I	CCWWGG	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	2 cut(s)	458, 467
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	2 cut(s)	454, 463
FauNDI	CATATG	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	3 cut(s)	89, 331, 497
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
GsaI	CCCAGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	185
Hin1II	CATG	2 cut(s)	458, 467
HindIII	AAGCTT	2 cut(s)	14, 122
HinfI	GANTC	2 cut(s)	352, 632
HphI	GGTGA	2 cut(s)	377, 497
Hpy166II	GTNNAC	2 cut(s)	331, 493
Hpy188I	TCNGA	2 cut(s)	76, 388
Hpy188III	TCNNGA	3 cut(s)	464, 548, 629
Hpy8I	GTNNAC	2 cut(s)	331, 493
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	3 cut(s)	21, 429, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 22, 31, 224
HpyF3I	CTNAG	3 cut(s)	8, 41, 387
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	458, 467
Kzo9I	GATC	5 cut(s)	85, 343, 436, 541, 607
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	8 cut(s)	7, 53, 149, 165, 286, 419, 446, 561
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	1 cut(s)	541
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	307, 365
MalI	GATC	5 cut(s)	87, 345, 438, 543, 609
MboI	GATC	5 cut(s)	85, 343, 436, 541, 607
MboII	GAAGA	7 cut(s)	261, 298, 353, 479, 482, 536, 551
MflI	RGATCY	2 cut(s)	436, 541
MluCI	AATT	3 cut(s)	150, 593, 636
MlyI	GAGTC	1 cut(s)	641
MnlI	CCTC	8 cut(s)	36, 168, 192, 230, 238, 309, 481, 529
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	2 cut(s)	146, 516
MslI	CAYNNNNRTG	2 cut(s)	411, 445
MspR9I	CCNGG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	4 cut(s)	13, 22, 31, 224
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	5 cut(s)	85, 343, 436, 541, 607
NlaIII	CATG	2 cut(s)	458, 467
NlaIV	GGNNCC	2 cut(s)	184, 438
NmuCI	GTSAC	1 cut(s)	365
OliI	CACNNNNGTG	1 cut(s)	445
PaeR7I	CTCGAG	1 cut(s)	629
PagI	TCATGA	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	33
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
PsiI	TTATAA	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	2 cut(s)	184, 438
PspPI	GGNCC	1 cut(s)	183
PsuI	RGATCY	2 cut(s)	436, 541
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
RseI	CAYNNNNRTG	2 cut(s)	411, 445
SaqAI	TTAA	2 cut(s)	146, 516
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	5 cut(s)	85, 343, 436, 541, 607
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	1 cut(s)	434
SetI	ASST	8 cut(s)	18, 72, 126, 339, 423, 487, 492, 508
SfaNI	GCATC	1 cut(s)	541
Sfr274I	CTCGAG	1 cut(s)	629
SinI	GGWCC	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	629
SmiMI	CAYNNNNRTG	2 cut(s)	411, 445
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	3 cut(s)	150, 593, 636
StyD4I	CCNGG	1 cut(s)	432
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	447
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	4 cut(s)	115, 142, 531, 630
TasI	AATT	3 cut(s)	150, 593, 636
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	2 cut(s)	146, 516
Tru9I	TTAA	2 cut(s)	146, 516
TscAI	CASTG	2 cut(s)	45, 452
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	5 cut(s)	93, 195, 452, 480, 516
TspRI	CASTG	2 cut(s)	45, 452
VpaK11BI	GGWCC	1 cut(s)	183
XhoI	CTCGAG	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.