Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005617.1

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

13416 .. 16810

Gene Structure 3395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005617.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgctgggccgtatgtacaagtccccgaagtgcccagtcaaggagggttttcttgcaaggttgataccaaagcgtagctttgtgccatatatcgagcataatgagtgcgagtgcgtcgtccatctagaattttgttggagtgaacgcttttgccctttcgggtggacccctgctaggccctctgaagagtcccaaacttctggttataaacctccgtataagatcattgtcactgtgaggttgttgccttaccgcttggcggtgacgaagaatcccatcgtagtggtaccggtgaaagttgattgcctcccgaaaggtaggccctcgcctcatatccaaatcctcactttttcggtctttcccgactgcctccacacctttcctctctcccaaacccctattttccccgggttctcttccaaggttcgagattctagggtttcggtgacagtcgttcgagccagcctcgacgcagtcaccgggattaggcctggcggagctatcgagagcgataagctacagtccgatgtgaggaagcgcaccatggacgttgtcgatgcctgcggagggagagtgacgattggtgacgtctttagcagagctgggctcaagctcaatgggggctcagaacgctttgcaggctctcgctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

24.08

Weight (kDa)

9.48

Isoelectric Point (pI)

59.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AatII	GACGTC	1 cut(s)	591
Acc65I	GGTACC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	286
AciI	CCGC	4 cut(s)	253, 260, 495, 564
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	588
AfaI	GTAC	2 cut(s)	17, 288
AfiI	CCNNNNNNNGG	6 cut(s)	40, 174, 259, 486, 531, 567
AgeI	ACCGGT	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	5 cut(s)	78, 500, 517, 602, 613
AluI	AGCT	5 cut(s)	78, 500, 517, 602, 613
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	4 cut(s)	7, 176, 320, 488
ApeKI	GCWGC	1 cut(s)	648
ApoI	RAATTY	1 cut(s)	128
AsiGI	ACCGGT	1 cut(s)	289
Asp718I	GGTACC	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	4 cut(s)	7, 165, 177, 321
AsuC2I	CCSGG	3 cut(s)	408, 409, 481
AsuHPI	GGTGA	5 cut(s)	274, 304, 457, 469, 596
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	286
BanII	GRGCYC	2 cut(s)	609, 626
BbvI	GCAGC	1 cut(s)	635
BccI	CCATC	2 cut(s)	129, 284
BciT130I	CCWGG	1 cut(s)	492
BcnI	CCSGG	3 cut(s)	408, 409, 481
BfaI	CTAG	3 cut(s)	125, 174, 435
BfmI	CTRYAG	1 cut(s)	518
BisI	GCNGC	1 cut(s)	649
BlsI	GCNGC	1 cut(s)	650
Bme1390I	CCNGG	4 cut(s)	408, 409, 481, 492
Bme18I	GGWCC	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	4 cut(s)	7, 165, 177, 321
BmiI	GGNNCC	2 cut(s)	167, 288
BmrFI	CCNGG	4 cut(s)	408, 409, 481, 492
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	547
BmuI	ACTGGG	1 cut(s)	29
BplI	GAGNNNNNCTC	4 cut(s)	450, 482, 591, 623
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	3 cut(s)	408, 409, 481
BsaHI	GRCGYC	1 cut(s)	588
BsaJI	CCNNGG	4 cut(s)	406, 407, 420, 543
BsaWI	WCCGGW	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 174, 259, 486, 531, 567
Bse118I	RCCGGY	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	4 cut(s)	406, 407, 420, 543
BseLI	CCNNNNNNNGG	6 cut(s)	40, 174, 259, 486, 531, 567
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	635
BseYI	CCCAGC	2 cut(s)	4, 602
BshFI	GGCC	4 cut(s)	9, 178, 322, 490
BshNI	GGYRCC	1 cut(s)	286
BshTI	ACCGGT	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	3 cut(s)	290, 408, 480
BslFI	GGGAC	2 cut(s)	7, 175
BslI	CCNNNNNNNGG	6 cut(s)	40, 174, 259, 486, 531, 567
BsmFI	GGGAC	2 cut(s)	7, 175
BsnI	GGCC	4 cut(s)	9, 178, 322, 490
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	3 cut(s)	35, 609, 626
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	222
Bsp19I	CCATGG	1 cut(s)	543
BspACI	CCGC	4 cut(s)	253, 260, 495, 564
BspANI	GGCC	4 cut(s)	9, 178, 322, 490
BspCNI	CTCAG	1 cut(s)	638
BspLI	GGNNCC	2 cut(s)	167, 288
BspT107I	GGYRCC	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	289
BsrGI	TGTACA	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	4 cut(s)	406, 407, 420, 543
BssMI	GATC	1 cut(s)	222
BssNI	GRCGYC	1 cut(s)	588
BssT1I	CCWWGG	2 cut(s)	420, 543
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	235, 451, 522
Bst6I	CTCTTC	2 cut(s)	180, 421
BstACI	GRCGYC	1 cut(s)	588
BstAUI	TGTACA	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	463, 562, 640
BstDEI	CTNAG	1 cut(s)	625
BstDSI	CCRYGG	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	3 cut(s)	630, 639, 648
BstNI	CCWGG	1 cut(s)	492
BstSCI	CCNGG	4 cut(s)	406, 407, 479, 490
BstSFI	CTRYAG	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	635
BstXI	CCANNNNNNTGG	2 cut(s)	200, 283
BsuRI	GGCC	4 cut(s)	9, 178, 322, 490
BtgI	CCRYGG	1 cut(s)	543
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	463, 562, 640
CfoI	GCGC	1 cut(s)	540
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	4 cut(s)	7, 165, 177, 321
Cfr9I	CCCGGG	1 cut(s)	407
CseI	GACGC	2 cut(s)	103, 479
Csp6I	GTAC	2 cut(s)	16, 287
CspAI	ACCGGT	1 cut(s)	289
CviAII	CATG	1 cut(s)	544
CviQI	GTAC	2 cut(s)	16, 287
DdeI	CTNAG	1 cut(s)	625
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	180, 421
EarI	CTCTTC	2 cut(s)	180, 421
EciI	GGCGGA	1 cut(s)	510
Eco130I	CCWWGG	2 cut(s)	420, 543
Eco147I	AGGCCT	1 cut(s)	490
Eco24I	GRGCYC	2 cut(s)	609, 626
Eco47I	GGWCC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	407
EcoO109I	RGGNCCY	2 cut(s)	177, 321
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	2 cut(s)	420, 543
EcoT38I	GRGCYC	2 cut(s)	609, 626
ErhI	CCWWGG	2 cut(s)	420, 543
FaeI	CATG	1 cut(s)	547
FaiI	YATR	8 cut(s)	14, 88, 90, 99, 207, 219, 333, 545
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	2 cut(s)	7, 175
FatI	CATG	1 cut(s)	543
Fnu4HI	GCNGC	1 cut(s)	649
FriOI	GRGCYC	2 cut(s)	609, 626
Fsp4HI	GCNGC	1 cut(s)	649
FspBI	CTAG	3 cut(s)	125, 174, 435
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	1 cut(s)	649
GsaI	CCCAGC	2 cut(s)	8, 606
HaeIII	GGCC	4 cut(s)	9, 178, 322, 490
HapII	CCGG	3 cut(s)	290, 408, 480
HgaI	GACGC	2 cut(s)	103, 479
HhaI	GCGC	1 cut(s)	540
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	1 cut(s)	547
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HinfI	GANTC	3 cut(s)	188, 271, 431
HpaII	CCGG	3 cut(s)	290, 408, 480
HphI	GGTGA	5 cut(s)	274, 304, 457, 469, 596
Hpy166II	GTNNAC	2 cut(s)	143, 165
Hpy188I	TCNGA	3 cut(s)	184, 526, 628
Hpy188III	TCNNGA	5 cut(s)	125, 310, 362, 428, 505
Hpy8I	GTNNAC	2 cut(s)	143, 165
Hpy99I	CGWCG	2 cut(s)	119, 473
HpyCH4III	ACNGT	3 cut(s)	235, 451, 522
HpyCH4IV	ACGT	2 cut(s)	549, 588
HpyCH4V	TGCA	2 cut(s)	56, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	630, 639, 648
HpyF3I	CTNAG	1 cut(s)	625
HpySE526I	ACGT	2 cut(s)	549, 588
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	1 cut(s)	547
HspAI	GCGC	1 cut(s)	538
KpnI	GGTACC	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	497
Lsp1109I	GCAGC	1 cut(s)	635
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	3 cut(s)	125, 174, 435
MaeII	ACGT	2 cut(s)	549, 588
MaeIII	GTNAC	6 cut(s)	229, 262, 445, 475, 574, 584
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	3 cut(s)	197, 280, 408
MhlI	GDGCHC	3 cut(s)	35, 609, 626
MluCI	AATT	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	281
MspI	CCGG	3 cut(s)	290, 408, 480
MspR9I	CCNGG	4 cut(s)	408, 409, 481, 492
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	3 cut(s)	630, 639, 648
NciI	CCSGG	3 cut(s)	408, 409, 481
NcoI	CCATGG	1 cut(s)	543
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	1 cut(s)	547
NlaIV	GGNNCC	2 cut(s)	167, 288
NmuCI	GTSAC	6 cut(s)	229, 262, 445, 475, 574, 584
PceI	AGGCCT	1 cut(s)	490
PfeI	GAWTC	2 cut(s)	271, 431
PflFI	GACNNNGTC	2 cut(s)	473, 551
PinAI	ACCGGT	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	650
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PsiI	TTATAA	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	490
PspFI	CCCAGC	2 cut(s)	4, 602
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	2 cut(s)	167, 288
PspPI	GGNCC	4 cut(s)	7, 165, 177, 321
PsyI	GACNNNGTC	2 cut(s)	473, 551
RsaI	GTAC	2 cut(s)	17, 288
RsaNI	GTAC	2 cut(s)	16, 287
RseI	CAYNNNNRTG	1 cut(s)	281
SatI	GCNGC	1 cut(s)	649
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	4 cut(s)	7, 165, 177, 321
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	4 cut(s)	408, 409, 481, 492
SduI	GDGCHC	3 cut(s)	35, 609, 626
SfaNI	GCATC	1 cut(s)	547
SfcI	CTRYAG	1 cut(s)	518
SinI	GGWCC	1 cut(s)	165
SmaI	CCCGGG	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	1 cut(s)	128
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	4 cut(s)	253, 260, 495, 564
SspMI	CTAG	3 cut(s)	125, 174, 435
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	4 cut(s)	406, 407, 479, 490
StyI	CCWWGG	2 cut(s)	420, 543
TaaI	ACNGT	3 cut(s)	235, 451, 522
TaiI	ACGT	2 cut(s)	552, 591
TaqI	TCGA	6 cut(s)	93, 427, 457, 468, 504, 555
TaqII	GACCGA	1 cut(s)	343
TasI	AATT	1 cut(s)	128
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	2 cut(s)	271, 431
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	6 cut(s)	229, 262, 445, 475, 574, 584
TseI	GCWGC	1 cut(s)	648
Tsp45I	GTSAC	6 cut(s)	229, 262, 445, 475, 574, 584
TspGWI	ACGGA	1 cut(s)	204
TspMI	CCCGGG	1 cut(s)	407
TspRI	CASTG	1 cut(s)	238
Tth111I	GACNNNGTC	2 cut(s)	473, 551
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	1 cut(s)	128
XbaI	TCTAGA	1 cut(s)	124
XmaI	CCCGGG	1 cut(s)	407
XspI	CTAG	3 cut(s)	125, 174, 435
ZraI	GACGTC	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.