Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

11027925 .. 11031733

Gene Structure 3809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0134700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGACTAAATATGAGCACATCAGCCGTGGAGAGCATCTTTTATGTGATGTTTGCAATGCATATTGTGATCAACTCGAATTGGTGCATGATACATTTTGGGACCGAAGAAGTTGTAGGGAACACTTCTTTGACGAGACTCCTTGGTGTTATAATTGTGACAGATTTCAGCAAGCTGGAGATCAATATTTGGACTTAGGTGACGGCCGATTAGCTTGCTCAGATTGCTCCTCCATAACTATTATGGATCCGAAGGACTTCAAGCCCCTTATTGAAATGGTGCATAAATTTTATAGAAGCTTAAATCTCAAATTAGTTGAAAACATTTCTGTATTATTGGCAGATAGACATGAGATTTACAAGCTTTGCATCAGCAAAGGTACGCTTGACGTAGGTACAGAAGTACTTGGCTTAACAATATGTGGTGTCCTTGCTTTCATCAGACGGACATTCTTTGTATGCAGTGTGCTGATGGGTGGAGCTTTGGCACATGAAATGATGCATACATGGTTGGAGCTTCAAGTGGGCGGTGGGATATTGGAAAAAAGAGTTAAAGAAGGTATTTGTGAAGTAATGAATTACATGTGGATGGAATGGTTTTGTGCTAATGAAGGTGTTGAGTACTCCTATAAAACTGACGAGCAAGCTGAGTTTACAAGAAAGTTGAAGGAGTTCTACCAACAGCGAAAGGAACGCTGTGAAGACGAATGTTATGGCCAAGGGTTCAGAGACGCTATGTGGGCAGTGCAAATATTTGGCCTCGAAACTACACTAGAACATATTGTTCAAAAAAGGAGCCTTCCTGAATCAATGGTGTATCCCTATGTGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

32.29

Weight (kDa)

5.18

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DA1-like	PF12315	154 - 261	6.2e-25	Protein DA1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AciI	CCGC	1 cut(s)	525
AclWI	GGATC	2 cut(s)	239, 252
AcoI	YGGCCR	2 cut(s)	202, 712
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	4 cut(s)	379, 394, 402, 620
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	6 cut(s)	259, 272, 317, 518, 664, 785
AluBI	AGCT	7 cut(s)	173, 212, 297, 361, 479, 514, 644
AluI	AGCT	7 cut(s)	173, 212, 297, 361, 479, 514, 644
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	2 cut(s)	128, 720
AlwI	GGATC	2 cut(s)	239, 252
AoxI	GGCC	3 cut(s)	202, 712, 754
ApoI	RAATTY	1 cut(s)	284
Asp700I	GAANNNNTTC	2 cut(s)	254, 668
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	100
BaeI	ACNNNNGTAYC	2 cut(s)	384, 417
BalI	TGGCCA	1 cut(s)	714
BamHI	GGATCC	1 cut(s)	244
BarI	GAAGNNNNNNTAC	2 cut(s)	656, 688
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	18
BccI	CCATC	2 cut(s)	463, 580
BceAI	ACGGC	2 cut(s)	9, 217
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BciVI	GTATCC	1 cut(s)	825
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	128, 720
BfaI	CTAG	1 cut(s)	770
BfuI	GTATCC	1 cut(s)	825
BmcAI	AGTACT	2 cut(s)	402, 620
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	3 cut(s)	101, 246, 794
BmsI	GCATC	3 cut(s)	43, 375, 486
BpiI	GAAGAC	1 cut(s)	705
BpmI	CTGGAG	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	25, 140, 715
Bse3DI	GCAATG	1 cut(s)	61
BseDI	CCNNGG	3 cut(s)	25, 140, 715
BseGI	GGATG	1 cut(s)	591
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	231, 636
BseRI	GAGGAG	1 cut(s)	217
BseX3I	CGGCCG	1 cut(s)	202
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	3 cut(s)	204, 714, 756
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	113
BsmAI	GTCTC	2 cut(s)	128, 720
BsmBI	CGTCTC	1 cut(s)	720
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	3 cut(s)	204, 714, 756
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	67, 178, 244
BspACI	CCGC	1 cut(s)	525
BspANI	GGCC	3 cut(s)	204, 714, 756
BspCNI	CTCAG	2 cut(s)	230, 637
BspLI	GGNNCC	3 cut(s)	101, 246, 794
BspPI	GGATC	2 cut(s)	239, 252
BsrDI	GCAATG	1 cut(s)	61
BssECI	CCNNGG	3 cut(s)	25, 140, 715
BssMI	GATC	3 cut(s)	67, 178, 244
BssT1I	CCWWGG	2 cut(s)	140, 715
BstC8I	GCNNGC	3 cut(s)	171, 214, 642
BstDEI	CTNAG	3 cut(s)	193, 217, 645
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	591
BstKTI	GATC	3 cut(s)	70, 181, 247
BstMAI	GTCTC	2 cut(s)	128, 720
BstMBI	GATC	3 cut(s)	67, 178, 244
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 737
BstNSI	RCATGY	1 cut(s)	583
BstV2I	GAAGAC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BstZI	CGGCCG	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	825
BsuRI	GGCC	3 cut(s)	204, 714, 756
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	591
BtsI	GCAGTG	2 cut(s)	466, 747
BtsIMutI	CAGTG	2 cut(s)	466, 747
Cac8I	GCNNGC	3 cut(s)	171, 214, 642
Cfr13I	GGNCC	1 cut(s)	100
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	4 cut(s)	378, 393, 401, 619
CviAII	CATG	5 cut(s)	86, 347, 488, 504, 580
CviQI	GTAC	4 cut(s)	378, 393, 401, 619
DdeI	CTNAG	3 cut(s)	193, 217, 645
DpnI	GATC	3 cut(s)	69, 180, 246
DpnII	GATC	3 cut(s)	67, 178, 244
EaeI	YGGCCR	2 cut(s)	202, 712
EagI	CGGCCG	1 cut(s)	202
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	140, 715
Eco47I	GGWCC	1 cut(s)	100
Eco52I	CGGCCG	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	140, 715
EcoT22I	ATGCAT	2 cut(s)	61, 501
ErhI	CCWWGG	2 cut(s)	140, 715
Esp3I	CGTCTC	1 cut(s)	720
FaeI	CATG	5 cut(s)	89, 350, 491, 507, 583
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	5 cut(s)	85, 346, 487, 503, 579
FbaI	TGATCA	1 cut(s)	67
FokI	GGATG	1 cut(s)	598
FspBI	CTAG	1 cut(s)	770
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	204, 714, 756
HgaI	GACGC	1 cut(s)	737
Hin1II	CATG	5 cut(s)	89, 350, 491, 507, 583
HindIII	AAGCTT	2 cut(s)	295, 359
HinfI	GANTC	2 cut(s)	136, 803
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	4 cut(s)	220, 249, 440, 725
Hpy188III	TCNNGA	2 cut(s)	800, 828
Hpy8I	GTNNAC	1 cut(s)	651
HpyAV	CCTTC	5 cut(s)	244, 548, 602, 658, 806
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	8 cut(s)	54, 59, 85, 280, 366, 459, 499, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 737
HpyF3I	CTNAG	3 cut(s)	193, 217, 645
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	5 cut(s)	89, 350, 491, 507, 583
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	67, 178, 244
LmnI	GCTCC	4 cut(s)	230, 476, 511, 792
LpnPI	CCDG	2 cut(s)	159, 813
LweI	GCATC	3 cut(s)	43, 375, 486
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	155, 197
MalI	GATC	3 cut(s)	69, 180, 246
MboI	GATC	3 cut(s)	67, 178, 244
MboII	GAAGA	2 cut(s)	117, 710
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	714
MluCI	AATT	5 cut(s)	77, 151, 284, 308, 574
MluNI	TGGCCA	1 cut(s)	714
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	2 cut(s)	238, 767
Mox20I	TGGCCA	1 cut(s)	714
Mph1103I	ATGCAT	2 cut(s)	61, 501
MroXI	GAANNNNTTC	2 cut(s)	254, 668
MscI	TGGCCA	1 cut(s)	714
MseI	TTAA	3 cut(s)	299, 410, 549
MslI	CAYNNNNRTG	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	222, 737
NdeII	GATC	3 cut(s)	67, 178, 244
NlaIII	CATG	5 cut(s)	89, 350, 491, 507, 583
NlaIV	GGNNCC	3 cut(s)	101, 246, 794
NmuCI	GTSAC	2 cut(s)	155, 197
NsiI	ATGCAT	2 cut(s)	61, 501
NspI	RCATGY	1 cut(s)	583
PciI	ACATGT	1 cut(s)	579
PdmI	GAANNNNTTC	2 cut(s)	254, 668
PfeI	GAWTC	1 cut(s)	803
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PscI	ACATGT	1 cut(s)	579
PsiI	TTATAA	1 cut(s)	150
PspN4I	GGNNCC	3 cut(s)	101, 246, 794
PspPI	GGNCC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	4 cut(s)	379, 394, 402, 620
RsaNI	GTAC	4 cut(s)	378, 393, 401, 619
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	3 cut(s)	299, 410, 549
Sau3AI	GATC	3 cut(s)	67, 178, 244
Sau96I	GGNCC	1 cut(s)	100
ScaI	AGTACT	2 cut(s)	402, 620
SchI	GAGTC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	18
SfaNI	GCATC	3 cut(s)	43, 375, 486
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	5 cut(s)	77, 151, 284, 308, 574
SsiI	CCGC	1 cut(s)	525
SspI	AATATT	2 cut(s)	185, 750
SspMI	CTAG	1 cut(s)	770
StyI	CCWWGG	2 cut(s)	140, 715
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	2 cut(s)	75, 759
TaqII	GACCGA	1 cut(s)	117
TasI	AATT	5 cut(s)	77, 151, 284, 308, 574
TatI	WGTACW	2 cut(s)	400, 618
TfiI	GAWTC	1 cut(s)	803
Tru1I	TTAA	3 cut(s)	299, 410, 549
Tru9I	TTAA	3 cut(s)	299, 410, 549
TscAI	CASTG	2 cut(s)	466, 747
TseFI	GTSAC	2 cut(s)	155, 197
Tsp45I	GTSAC	2 cut(s)	155, 197
TspDTI	ATGAA	4 cut(s)	424, 504, 587, 621
TspGWI	ACGGA	1 cut(s)	457
TspRI	CASTG	2 cut(s)	466, 747
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmnI	GAANNNNTTC	2 cut(s)	254, 668
XspI	CTAG	1 cut(s)	770
ZrmI	AGTACT	2 cut(s)	402, 620
Zsp2I	ATGCAT	2 cut(s)	61, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.