Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004688.1

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Forward (+)

38150 .. 41372

Gene Structure 3223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004688.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggacgctgtcgacttctgcggagggagagtgaagattggtgacgtctccagcagagctgggctcaagctcaatgaggctcagaacactttgcaggctctcgttgccgacactgagggcttcttggaggtcttggatgaaggcgatgtgctttatgttttccccaaagattatcaagcaaagcttcttgccaaatcgtttcgattgagaattgagcctctgctggagaaagcaaaggtagtttttctttctggaatttggaagattgattataatgctttggttacagcgaggatgacaatcgtggacgacgtggaagatcatatgattcggggtttgaagcccttgttggatttcaggttgttacagtgggcattgtgggaggatccaacctttctaacaaagcagcttggaaagacagttatgggtgactatgattatgtattttctgagaatggtcttgtggctcacaaagatgtgaagctcatttgcacccaggctgctggcatgctgccgagcccttcacacgacggttccctacaatcgaccttcatcagacgacgcctcgatatacgacggtcagcatccatatcagacgacattttttgcccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.93

Weight (kDa)

5.43

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AatII	GACGTC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	2 cut(s)	380, 393
AcsI	RAATTY	1 cut(s)	255
AcyI	GRCGYC	2 cut(s)	45, 562
AgsI	TTSAA	1 cut(s)	340
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	495
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	5 cut(s)	59, 70, 184, 409, 484
AluI	AGCT	5 cut(s)	59, 70, 184, 409, 484
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	2 cut(s)	380, 393
ApeKI	GCWGC	3 cut(s)	406, 500, 511
ApoI	RAATTY	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	53, 440
BamHI	GGATCC	1 cut(s)	385
BanII	GRGCYC	2 cut(s)	66, 521
BbvI	GCAGC	3 cut(s)	418, 487, 498
BciT130I	CCWGG	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	52
BisI	GCNGC	3 cut(s)	407, 501, 512
BlsI	GCNGC	3 cut(s)	408, 502, 513
Bme1390I	CCNGG	1 cut(s)	497
BmgBI	CACGTC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	387, 535
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	1 cut(s)	593
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BpmI	CTGGAG	2 cut(s)	34, 245
BpuEI	CTTGAG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	299
BsaHI	GRCGYC	2 cut(s)	45, 562
BsaJI	CCNNGG	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse8I	GATNNNNATC	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	3 cut(s)	142, 300, 584
BseJI	GATNNNNATC	1 cut(s)	299
BseMII	CTCAG	3 cut(s)	95, 105, 441
BseXI	GCAGC	3 cut(s)	418, 487, 498
BseYI	CCCAGC	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	52
BsmBI	CGTCTC	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	66, 521
Bsp143I	GATC	2 cut(s)	319, 385
BspACI	CCGC	1 cut(s)	21
BspCNI	CTCAG	3 cut(s)	94, 106, 442
BspLI	GGNNCC	2 cut(s)	387, 535
BspPI	GGATC	2 cut(s)	380, 393
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	2 cut(s)	319, 385
BssNI	GRCGYC	2 cut(s)	45, 562
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	4 cut(s)	369, 421, 533, 579
BstACI	GRCGYC	2 cut(s)	45, 562
BstC8I	GCNNGC	3 cut(s)	96, 505, 509
BstDEI	CTNAG	3 cut(s)	81, 114, 450
BstF5I	GGATG	3 cut(s)	142, 300, 584
BstKTI	GATC	2 cut(s)	322, 388
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	319, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	1 cut(s)	495
BstV1I	GCAGC	3 cut(s)	418, 487, 498
BstX2I	RGATCY	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	385
BtgZI	GCGATG	1 cut(s)	159
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	142, 300, 584
BtsIMutI	CAGTG	2 cut(s)	111, 374
Cac8I	GCNNGC	3 cut(s)	96, 505, 509
CseI	GACGC	2 cut(s)	14, 570
CviAII	CATG	1 cut(s)	508
DdeI	CTNAG	3 cut(s)	81, 114, 450
DpnI	GATC	2 cut(s)	321, 387
DpnII	GATC	2 cut(s)	319, 385
Eco24I	GRGCYC	2 cut(s)	66, 521
EcoRII	CCWGG	1 cut(s)	495
EcoT38I	GRGCYC	2 cut(s)	66, 521
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	1 cut(s)	511
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	1 cut(s)	507
FauNDI	CATATG	1 cut(s)	324
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	3 cut(s)	407, 501, 512
FokI	GGATG	3 cut(s)	149, 307, 571
FriOI	GRGCYC	2 cut(s)	66, 521
Fsp4HI	GCNGC	3 cut(s)	407, 501, 512
GluI	GCNGC	3 cut(s)	407, 501, 512
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	2 cut(s)	34, 245
HgaI	GACGC	2 cut(s)	14, 570
Hin1I	GRCGYC	2 cut(s)	45, 562
Hin1II	CATG	1 cut(s)	511
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	1 cut(s)	328
HphI	GGTGA	2 cut(s)	53, 440
Hpy166II	GTNNAC	2 cut(s)	13, 307
Hpy188I	TCNGA	4 cut(s)	84, 451, 557, 595
Hpy188III	TCNNGA	1 cut(s)	252
Hpy8I	GTNNAC	2 cut(s)	13, 307
Hpy99I	CGWCG	4 cut(s)	314, 533, 564, 579
HpyAV	CCTTC	3 cut(s)	134, 531, 559
HpyCH4III	ACNGT	4 cut(s)	369, 421, 533, 579
HpyCH4IV	ACGT	2 cut(s)	45, 312
HpyCH4V	TGCA	2 cut(s)	94, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	3 cut(s)	81, 114, 450
HpySE526I	ACGT	2 cut(s)	45, 312
Hsp92I	GRCGYC	2 cut(s)	45, 562
Hsp92II	CATG	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	319, 385
LpnPI	CCDG	9 cut(s)	45, 64, 80, 209, 237, 343, 482, 489, 509
Lsp1109I	GCAGC	3 cut(s)	418, 487, 498
LweI	GCATC	1 cut(s)	593
MaeII	ACGT	2 cut(s)	45, 312
MaeIII	GTNAC	4 cut(s)	41, 283, 363, 428
MalI	GATC	2 cut(s)	321, 387
MboI	GATC	2 cut(s)	319, 385
MboII	GAAGA	3 cut(s)	46, 274, 329
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	2 cut(s)	66, 521
MluCI	AATT	2 cut(s)	210, 255
MmeI	TCCRAC	2 cut(s)	330, 413
MnlI	CCTC	8 cut(s)	17, 70, 109, 121, 228, 285, 376, 575
MslI	CAYNNNNRTG	1 cut(s)	474
MspR9I	CCNGG	1 cut(s)	497
MvaI	CCWGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	2 cut(s)	319, 385
NlaIII	CATG	1 cut(s)	511
NlaIV	GGNNCC	2 cut(s)	387, 535
NmeAIII	GCCGAG	1 cut(s)	540
NmuCI	GTSAC	2 cut(s)	41, 428
NspI	RCATGY	1 cut(s)	511
PaeI	GCATGC	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	328
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	408, 502, 513
PsiI	TTATAA	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	495
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	2 cut(s)	387, 535
PsuI	RGATCY	1 cut(s)	385
PsyI	GACNNNGTC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	474
SalI	GTCGAC	1 cut(s)	11
SatI	GCNGC	3 cut(s)	407, 501, 512
Sau3AI	GATC	2 cut(s)	319, 385
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	2 cut(s)	66, 521
SfaNI	GCATC	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SphI	GCATGC	1 cut(s)	511
Sse9I	AATT	2 cut(s)	210, 255
SsiI	CCGC	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	495
TaaI	ACNGT	4 cut(s)	369, 421, 533, 579
TaiI	ACGT	2 cut(s)	48, 315
TaqI	TCGA	4 cut(s)	12, 202, 545, 567
TasI	AATT	2 cut(s)	210, 255
TfiI	GAWTC	1 cut(s)	328
TscAI	CASTG	2 cut(s)	118, 374
TseFI	GTSAC	2 cut(s)	41, 428
TseI	GCWGC	3 cut(s)	406, 500, 511
Tsp45I	GTSAC	2 cut(s)	41, 428
TspDTI	ATGAA	2 cut(s)	153, 541
TspRI	CASTG	2 cut(s)	118, 374
Tth111I	GACNNNGTC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	12
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.