Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8137536.1

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Forward (+)

204 .. 637

Gene Structure 434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8137536.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 434 bp

atggcttccattgccacctgcttcactctgcctcccaagcctctccctcgcctcatctccaaatcctcactcttccccaaccgcctccacgcctttcctctctcccaaacccccattttccctggcttcccctccaaggttcgacattctagggtttcggtgacggtcgttcgagccagcctcgacgccgtcaccgggatcaggcccggcggagctgtcgagagcgataagctgccgtccgatgtcaggaagcgcaccatggacgctgtcgacgcgtgcggagggagagtgacgattggtgacgtgtccagcagagctgggctgaagctcaatgaggctcagaacgctttgcaggctctcgctgccgacactgagggcttcttggaggtagttattttcgaaaaattgatatctatagttctttctatgctgtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.35

Weight (kDa)

9.69

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	1 cut(s)	275
AciI	CCGC	3 cut(s)	82, 210, 279
AclWI	GGATC	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	186
AfiI	CCNNNNNNNGG	4 cut(s)	136, 195, 201, 246
AflIII	ACRYGT	2 cut(s)	273, 303
AjiI	CACGTC	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	4 cut(s)	215, 232, 317, 328
AluI	AGCT	4 cut(s)	215, 232, 317, 328
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	232, 362
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	204
AsuC2I	CCSGG	2 cut(s)	196, 207
AsuHPI	GGTGA	3 cut(s)	172, 184, 311
AsuII	TTCGAA	1 cut(s)	399
BbvI	GCAGC	2 cut(s)	219, 349
BceAI	ACGGC	2 cut(s)	173, 220
BciT130I	CCWGG	1 cut(s)	123
BcnI	CCSGG	2 cut(s)	196, 207
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	414
BfuAI	ACCTGC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	233, 363
BlsI	GCNGC	2 cut(s)	234, 364
Bme1390I	CCNGG	3 cut(s)	123, 196, 207
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	204
BmrFI	CCNGG	3 cut(s)	123, 196, 207
BplI	GAGNNNNNCTC	2 cut(s)	165, 197
Bpu14I	TTCGAA	1 cut(s)	399
BpuMI	CCSGG	2 cut(s)	196, 207
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	121, 135, 258
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 273, 303
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 195, 201, 246
Bse3DI	GCAATG	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	121, 135, 258
BseLI	CCNNNNNNNGG	4 cut(s)	136, 195, 201, 246
BseMI	GCAATG	1 cut(s)	9
BseMII	CTCAG	2 cut(s)	353, 363
BseXI	GCAGC	2 cut(s)	219, 349
BseYI	CCCAGC	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	195, 207
BslI	CCNNNNNNNGG	4 cut(s)	136, 195, 201, 246
BsnI	GGCC	1 cut(s)	205
Bsp119I	TTCGAA	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	3 cut(s)	82, 210, 279
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	2 cut(s)	352, 364
BspFNI	CGCG	1 cut(s)	275
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	1 cut(s)	206
BspT104I	TTCGAA	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	9
BssECI	CCNNGG	3 cut(s)	121, 135, 258
BssMI	GATC	1 cut(s)	198
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	135, 258
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	186
BstBI	TTCGAA	1 cut(s)	399
BstC8I	GCNNGC	3 cut(s)	178, 277, 354
BstDEI	CTNAG	2 cut(s)	339, 372
BstDSI	CCRYGG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 37, 272, 344, 353, 362
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	3 cut(s)	121, 194, 205
BstSFI	CTRYAG	1 cut(s)	414
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	219, 349
BsuRI	GGCC	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	3 cut(s)	178, 277, 354
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	3 cut(s)	194, 272, 281
CviAII	CATG	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	339, 372
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	135, 258
Eco32I	GATATC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	411
EcoT14I	CCWWGG	2 cut(s)	135, 258
ErhI	CCWWGG	2 cut(s)	135, 258
FaeI	CATG	1 cut(s)	262
FaiI	YATR	3 cut(s)	260, 416, 428
FatI	CATG	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	233, 363
Fsp4HI	GCNGC	2 cut(s)	233, 363
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	233, 363
GsaI	CCCAGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	2 cut(s)	195, 207
HgaI	GACGC	3 cut(s)	194, 272, 281
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HpaII	CCGG	2 cut(s)	195, 207
HphI	GGTGA	3 cut(s)	172, 184, 311
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	241, 342
Hpy188III	TCNNGA	2 cut(s)	220, 247
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	2 cut(s)	188, 275
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 37, 272, 344, 353, 362
HpyF3I	CTNAG	2 cut(s)	339, 372
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	212
Lsp1109I	GCAGC	2 cut(s)	219, 349
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	4 cut(s)	160, 190, 289, 299
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	1 cut(s)	64
MluCI	AATT	1 cut(s)	404
MluI	ACGCGT	1 cut(s)	273
MspI	CCGG	2 cut(s)	195, 207
MspR9I	CCNGG	3 cut(s)	123, 196, 207
MvaI	CCWGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	6 cut(s)	11, 37, 272, 344, 353, 362
NciI	CCSGG	2 cut(s)	196, 207
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	1 cut(s)	262
NmuCI	GTSAC	4 cut(s)	160, 190, 289, 299
NspV	TTCGAA	1 cut(s)	399
PaqCI	CACCTGC	1 cut(s)	26
PflFI	GACNNNGTC	2 cut(s)	188, 266
PkrI	GCNGC	2 cut(s)	234, 364
Psp6I	CCWGG	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	204
PsyI	GACNNNGTC	2 cut(s)	188, 266
SalI	GTCGAC	1 cut(s)	269
SatI	GCNGC	2 cut(s)	233, 363
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	204
ScrFI	CCNGG	3 cut(s)	123, 196, 207
SetI	ASST	8 cut(s)	20, 141, 217, 234, 306, 319, 330, 390
SfcI	CTRYAG	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	399
Sse9I	AATT	1 cut(s)	404
SsiI	CCGC	3 cut(s)	82, 210, 279
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	3 cut(s)	121, 194, 205
StyI	CCWWGG	2 cut(s)	135, 258
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	6 cut(s)	142, 172, 183, 219, 270, 399
TasI	AATT	1 cut(s)	404
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	4 cut(s)	160, 190, 289, 299
TseI	GCWGC	2 cut(s)	232, 362
Tsp45I	GTSAC	4 cut(s)	160, 190, 289, 299
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	2 cut(s)	188, 266
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.