Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

19326717 .. 19332769

Gene Structure 6053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG213900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCAAGCACTAAAAGCCAGGAGCCAACTGGACTATGTGTTGACTTGCGATGCAAGCCAGGAGGGGCAGAAGTTCTTCTCATTTGTATTTGGCGATGGTGATCCAAATCGAGGAATCGAAGAAAAGAGATGGAAGCTGATTGGGAACTACATATCCTCTAATGGTGGTGTTGTTGCAGCTGAAGAGCTTGCTCCATATCTTGATATAGAAACTACAGGGGATACTCTGACTGATGAAGCATACATCTTACCTGTTCTTTCACGGTATGAGGGTCAGCCTTTAATAGATGAGGAGGGAAACATTCTGTACCAGTTTCCATCTCTACAGCGCACAGCTTCTAGGAAGATGAGAATATGTCCAGAGATTGTTGGAGAAGCTGATAAATTTTTGAAGGAGGAGAAATGGCAATTTAGTAAAATTAGTATTGCTAAGAGAGCAATGGTCGTTGGACTTGGTGGACTCAATGTATTTGGGGTTCTCATTCTGAGAGGCCTATTACAGGATCCTATAGTTGCACAAGTTGGTTTTATCAAGTTTATTACAAGCATAAATCCTCTACTTCAGATTTATGCTGGTTTCTTCTTTGTAATTCCTCTGTTCCGGGGGTTTGTCTTGCTCAAGACAAATGCTGACATAGAAAAAAGAAATCAAGCCAGACAGCAATTTGCTCAAGACATTGAATTGCCTGATCTATCACTAAGACGAAAGCTCCTCAGTGCTCGGAACATGGCCCAAAGAATTGTCATAGGGCTGGACAGAATTGTTTATAGCTCTTCCAAGGATTTGTTTGAACAAGAGTTGGATAGAGGGTTTCAACAGATAGACAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

31.34

Weight (kDa)

5.8

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	95, 497, 510
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	2 cut(s)	201, 545
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	110, 499
AgsI	TTSAA	4 cut(s)	391, 680, 791, 815
AjnI	CCWGG	2 cut(s)	17, 57
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	7 cut(s)	136, 179, 187, 335, 377, 709, 771
AluI	AGCT	7 cut(s)	136, 179, 187, 335, 377, 709, 771
Alw21I	GWGCWC	1 cut(s)	721
AlwI	GGATC	3 cut(s)	95, 497, 510
AoxI	GGCC	2 cut(s)	490, 729
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	383
Asp700I	GAANNNNTTC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	730
AsuC2I	CCSGG	1 cut(s)	602
AsuHPI	GGTGA	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	721
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	3 cut(s)	89, 123, 325
BciT130I	CCWGG	2 cut(s)	19, 59
BciVI	GTATCC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	602
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	3 cut(s)	213, 323, 507
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	3 cut(s)	19, 59, 602
BmgT120I	GGNCC	1 cut(s)	730
BmiI	GGNNCC	2 cut(s)	23, 504
BmrFI	CCNGG	3 cut(s)	19, 59, 602
BmsI	GCATC	1 cut(s)	40
BpuEI	CTTGAG	2 cut(s)	602, 654
BpuMI	CCSGG	1 cut(s)	602
BsaBI	GATNNNNATC	2 cut(s)	99, 105
BsaJI	CCNNGG	2 cut(s)	601, 777
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 499
Bse1I	ACTGG	2 cut(s)	33, 310
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	2 cut(s)	99, 105
BseBI	CCWGG	2 cut(s)	19, 59
BseDI	CCNNGG	2 cut(s)	601, 777
BseJI	GATNNNNATC	2 cut(s)	99, 105
BseLI	CCNNNNNNNGG	2 cut(s)	110, 499
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	476, 727
BseNI	ACTGG	2 cut(s)	33, 310
BseRI	GAGGAG	3 cut(s)	305, 410, 701
BseXI	GCAGC	1 cut(s)	188
BshFI	GGCC	2 cut(s)	492, 731
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	1 cut(s)	601
BslI	CCNNNNNNNGG	2 cut(s)	110, 499
BsnI	GGCC	2 cut(s)	492, 731
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	3 cut(s)	100, 502, 688
BspANI	GGCC	2 cut(s)	492, 731
BspCNI	CTCAG	2 cut(s)	477, 726
BspLI	GGNNCC	2 cut(s)	23, 504
BspPI	GGATC	3 cut(s)	95, 497, 510
BspQI	GCTCTTC	2 cut(s)	177, 778
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	33, 310
BssECI	CCNNGG	2 cut(s)	601, 777
BssMI	GATC	3 cut(s)	100, 502, 688
BssT1I	CCWWGG	1 cut(s)	777
Bst2UI	CCWGG	2 cut(s)	19, 59
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	2 cut(s)	177, 778
BstC8I	GCNNGC	3 cut(s)	6, 55, 189
BstDEI	CTNAG	4 cut(s)	429, 485, 698, 713
BstENI	CCTNNNNNAGG	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	3 cut(s)	103, 505, 691
BstMBI	GATC	3 cut(s)	100, 502, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 54, 434
BstNI	CCWGG	2 cut(s)	19, 59
BstSCI	CCNGG	3 cut(s)	17, 57, 600
BstSFI	CTRYAG	3 cut(s)	213, 323, 507
BstV1I	GCAGC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	492, 731
BtgZI	GCGATG	2 cut(s)	63, 108
BtsIMutI	CAGTG	1 cut(s)	721
Cac8I	GCNNGC	3 cut(s)	6, 55, 189
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	730
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	1 cut(s)	727
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	4 cut(s)	429, 485, 698, 713
DpnI	GATC	3 cut(s)	102, 504, 690
DpnII	GATC	3 cut(s)	100, 502, 688
Eam1104I	CTCTTC	2 cut(s)	177, 778
EarI	CTCTTC	2 cut(s)	177, 778
Eco130I	CCWWGG	1 cut(s)	777
Eco147I	AGGCCT	1 cut(s)	492
Eco57I	CTGAAG	2 cut(s)	201, 545
EcoNI	CCTNNNNNAGG	1 cut(s)	497
EcoRII	CCWGG	2 cut(s)	17, 57
EcoT14I	CCWWGG	1 cut(s)	777
ErhI	CCWWGG	1 cut(s)	777
FaeI	CATG	1 cut(s)	730
FatI	CATG	1 cut(s)	726
Fnu4HI	GCNGC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	492, 731
HapII	CCGG	1 cut(s)	601
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	730
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	114, 459
HpaII	CCGG	1 cut(s)	601
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	42, 458
Hpy188I	TCNGA	4 cut(s)	228, 486, 564, 723
Hpy188III	TCNNGA	4 cut(s)	200, 359, 619, 671
Hpy8I	GTNNAC	2 cut(s)	42, 458
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	4 cut(s)	4, 53, 176, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 54, 434
HpyF3I	CTNAG	4 cut(s)	429, 485, 698, 713
Hsp92II	CATG	1 cut(s)	730
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	100, 502, 688
LguI	GCTCTTC	2 cut(s)	177, 778
LmnI	GCTCC	3 cut(s)	21, 196, 714
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	339
MalI	GATC	3 cut(s)	102, 504, 690
MboI	GATC	3 cut(s)	100, 502, 688
MboII	GAAGA	6 cut(s)	67, 131, 194, 355, 571, 765
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	1 cut(s)	721
MluCI	AATT	8 cut(s)	383, 407, 417, 588, 662, 680, 738, 759
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	3 cut(s)	349, 427, 780
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	601
MspR9I	CCNGG	3 cut(s)	19, 59, 602
MvaI	CCWGG	2 cut(s)	19, 59
MwoI	GCNNNNNNNGC	3 cut(s)	14, 54, 434
NciI	CCSGG	1 cut(s)	602
NdeII	GATC	3 cut(s)	100, 502, 688
NlaIII	CATG	1 cut(s)	730
NlaIV	GGNNCC	2 cut(s)	23, 504
PceI	AGGCCT	1 cut(s)	492
PciSI	GCTCTTC	2 cut(s)	177, 778
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	17, 57
PspGI	CCWGG	2 cut(s)	17, 57
PspN4I	GGNNCC	2 cut(s)	23, 504
PspPI	GGNCC	1 cut(s)	730
PsrI	GAACNNNNNNTAC	2 cut(s)	459, 491
PsuI	RGATCY	1 cut(s)	502
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SapI	GCTCTTC	2 cut(s)	177, 778
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	3 cut(s)	100, 502, 688
Sau96I	GGNCC	1 cut(s)	730
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	3 cut(s)	19, 59, 602
SduI	GDGCHC	1 cut(s)	721
SetI	ASST	8 cut(s)	138, 181, 189, 253, 337, 379, 711, 773
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	3 cut(s)	213, 323, 507
SmlI	CTYRAG	2 cut(s)	617, 669
SmoI	CTYRAG	2 cut(s)	617, 669
Sse9I	AATT	8 cut(s)	383, 407, 417, 588, 662, 680, 738, 759
SseBI	AGGCCT	1 cut(s)	492
SspMI	CTAG	1 cut(s)	339
StuI	AGGCCT	1 cut(s)	492
StyD4I	CCNGG	3 cut(s)	17, 57, 600
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	109, 117
TasI	AATT	8 cut(s)	383, 407, 417, 588, 662, 680, 738, 759
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	1 cut(s)	721
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	249
TspRI	CASTG	1 cut(s)	721
XagI	CCTNNNNNAGG	1 cut(s)	497
XapI	RAATTY	1 cut(s)	383
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.