Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

3700044 .. 3700701

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0048000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGGAAGGGGACTGGAACCTTTGGCAAACTCTTTGGAGCCACACTCTCTGCATGCGGTGCGGCCGTCGGAGCTTTCATCTTCAGAAGAGTCGTTGCGCCTCTTGCGGCTACCCCGCCAGCCGTATCAGAAAATGTCAAACTCTTTTCTCTACACTTCTGCTTCCTCTGTTTTCAACTTGTGCTTAAGTTTTCAATTCCAAAGTTGAAGAATGAGGTACCTTCGTCAGTCATGTCGCGGTTAGATTCAAGTTCAACTTCAGAGAAGGTACTGAGGCAGCTCCAAGAAAGAAGAGGGGCTATCTATCATGAGCAAATCATAAGCTTCTCAGCTTTGGCTAAAACTAGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.61

Weight (kDa)

9.95

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	217
AccB1I	GGYRCC	1 cut(s)	217
AccII	CGCG	1 cut(s)	238
AciI	CCGC	5 cut(s)	57, 62, 107, 116, 238
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	2 cut(s)	67, 243
AfaI	GTAC	3 cut(s)	219, 270, 349
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	176, 195, 208, 249, 255
AhlI	ACTAGT	1 cut(s)	344
AluBI	AGCT	4 cut(s)	74, 280, 324, 332
AluI	AGCT	4 cut(s)	74, 280, 324, 332
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	277
Asp718I	GGTACC	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	100
BaeI	ACNNNNGTAYC	2 cut(s)	209, 242
BanI	GGYRCC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	289
BceAI	ACGGC	2 cut(s)	50, 107
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	1 cut(s)	345
BfrI	CTTAAG	1 cut(s)	185
BisI	GCNGC	3 cut(s)	63, 108, 278
BlsI	GCNGC	3 cut(s)	64, 109, 279
BmcAI	AGTACT	1 cut(s)	349
BmiI	GGNNCC	3 cut(s)	19, 40, 219
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
Bse1I	ACTGG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	263, 342
BseNI	ACTGG	1 cut(s)	19
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	289
Bsh1236I	CGCG	1 cut(s)	238
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	217
BsiEI	CGRYCG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	65
BspACI	CCGC	5 cut(s)	57, 62, 107, 116, 238
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	264, 341
BspFNI	CGCG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	3 cut(s)	19, 40, 219
BspT107I	GGYRCC	1 cut(s)	217
BspTI	CTTAAG	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	19
Bst6I	CTCTTC	2 cut(s)	82, 286
BstAFI	CTTAAG	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	55, 120
BstDEI	CTNAG	3 cut(s)	272, 328, 351
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	100
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 71, 104
BstNSI	RCATGY	1 cut(s)	57
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	289
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	65
Cac8I	GCNNGC	2 cut(s)	55, 120
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	218, 269, 348
CviAII	CATG	3 cut(s)	54, 232, 308
CviQI	GTAC	3 cut(s)	218, 269, 348
DdeI	CTNAG	3 cut(s)	272, 328, 351
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	82, 286
EarI	CTCTTC	2 cut(s)	82, 286
EclXI	CGGCCG	1 cut(s)	63
Eco52I	CGGCCG	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	67, 243
FaeI	CATG	3 cut(s)	57, 235, 311
FaiI	YATR	4 cut(s)	55, 233, 309, 320
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	3 cut(s)	53, 231, 307
FauI	CCCGC	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	63, 108, 278
Fsp4HI	GCNGC	3 cut(s)	63, 108, 278
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	3 cut(s)	63, 108, 278
HaeIII	GGCC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	57, 235, 311
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	2 cut(s)	90, 245
Hpy188I	TCNGA	4 cut(s)	71, 86, 130, 262
Hpy188III	TCNNGA	1 cut(s)	308
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	231, 259
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 71, 104
HpyF3I	CTNAG	3 cut(s)	272, 328, 351
Hsp92II	CATG	3 cut(s)	57, 235, 311
HspAI	GCGC	1 cut(s)	98
KpnI	GGTACC	1 cut(s)	221
LmnI	GCTCC	3 cut(s)	38, 71, 285
LpnPI	CCDG	1 cut(s)	132
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	345
MboII	GAAGA	4 cut(s)	73, 99, 220, 303
MluCI	AATT	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	5 cut(s)	111, 176, 208, 267, 287
MseI	TTAA	1 cut(s)	186
MspCI	CTTAAG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	59, 71, 104
NlaIII	CATG	3 cut(s)	57, 235, 311
NlaIV	GGNNCC	3 cut(s)	19, 40, 219
NspI	RCATGY	1 cut(s)	57
PaeI	GCATGC	1 cut(s)	57
PagI	TCATGA	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	64, 109, 279
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PspN4I	GGNNCC	3 cut(s)	19, 40, 219
RsaI	GTAC	3 cut(s)	219, 270, 349
RsaNI	GTAC	3 cut(s)	218, 269, 348
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	3 cut(s)	63, 108, 278
ScaI	AGTACT	1 cut(s)	349
SchI	GAGTC	1 cut(s)	99
SetI	ASST	8 cut(s)	23, 76, 219, 223, 270, 282, 326, 334
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SpeI	ACTAGT	1 cut(s)	344
SphI	GCATGC	1 cut(s)	57
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	5 cut(s)	57, 62, 107, 116, 238
SspMI	CTAG	1 cut(s)	345
TasI	AATT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	2 cut(s)	65, 110
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	67
Vha464I	CTTAAG	1 cut(s)	185
XceI	RCATGY	1 cut(s)	57
XspI	CTAG	1 cut(s)	345
ZrmI	AGTACT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.