Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

18292048 .. 18296856

Gene Structure 4809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G016960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1584 bp

ATGGCGTCCATGGCTACCTGCTTCACTCTTCCACCAAACCCTTGTCATCGTCTCCTTTTCAAAGCTTCAATCTTACCTAATCGTTCCCAAGCCCTCCCCATTATCCAAGCCCCTCTTTTCCCGTCCCTTGCCTCCAAGTTTCGACAATCTAGGGCTTCTGCGCCGGTTGTGAGAGCCAGCATTGCCGCCGCGGTCAGGCCCGGCGGCGCCGTCGAGAGCGATAAGTTACCTTCCGATGTGAGAAAGCGAGCAATGGAAGCTGTGGACGCTTGTGGAAGAAGAATGACTGTTGGTGACGTGGCCGGCAGAGCGGGGCTTAAGCTCCATGAGGCTCAGAACGCTTTGCAAGCTCTCGCTTCTGACACTCATGGCTTCTTGGAGGTCTCTGATGAAGGCGATGTACTCTACGTTTTCCCCAGAGATTATAGAGCAAAACTTGTAGGCAAATCGTTCATAATGAGAGCTGAGCCGCTGCTTGAGAAGGCAAAGGCCGGGGCTGAGTATTTAGCAAGGGTTTCATTTGGAACTGCTCTGATTGCTTCCATTATTCTTGTTTTTACTGCAATTCTTGTTGCCCTTCTTGCCCTTAAAGGAAGTGGCGATAGTGATGACGGCAAGAGCTCTTCAACTTCTTTTGACACTAGTTTCAGTCTTTCTTCGTGTCGGGATGAAGTGGTTTGGTACTGGGATCCCAATTACTATAGGAAGCGACGAGGAAAACCACAAACAGATGATGGGGTGTTGAAATTTGTTGAATCTTTTTTCTCGTTTGTGTTTGGCGATGGTGATCCAAATCAAGGAATTGAAGAAAAGAGATGGAAGATGATTGGGCACTACATATCCTCTAATGGTGGTGTTGTTGCAGCTGAAGAGCTTGCTCCATATCTTGATATAGAAACTTCAGTGGAAACTCCGACTGATGAAGCATACATCTTACCTGTTCTTTCACGGTATGAGGGTCAGCCTTTAATAGATGAAGAGTCGGAAATATTTAAAATTAAAAAACGCATATTATGCAGGGAAACATTCTGTACGTACCAGTTTCCATCTCTACAACGCACAGCTTCTATAAAGAAAAGAATATCGCCAAAGATTGGAGAAGCTGATAAATTTTTGGAGGAAAAATGGCAATTCAGTAAAACTAGCAATGCAGAGAGAGCAATGGTCGTGGGACTTGGTGGACTTAATTTATGCGGGGTTATCATTCTGAGAAACTTGTTAAAGGATCCTACAGTTGCCCAAGTTGGTTTTATCAAGTTTATTATAAGCATATTTCCTCTACTTCAGAATTATGCTGTTTCCTTCTTTGTAATTCCTCTGTTCCGGTGGTTTGTCTTGCTCAAGAAAAATGCTGACATAGAAAAAAGAAACCAAGCCAGACGGCAGTTTGCTCGAGACATTGAATTGCCTGATCTCTCACTAAGACGAAAGGTACTCGGTGCTCGGAACATGGCCCAAAGAACTGTCATAGGGCAGGACAGAATTGTTTATAGCTCTCGCAAGGATTTGGTTGAGCAAGAGTTGGATAGAGGGTTTCAACAGATAGACAAGTCAGATGAAAAAAAGGCTACCATTACTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

527

Amino Acids

58.88

Weight (kDa)

9.21

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1265
Acc36I	ACCTGC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	206
AccB7I	CCANNNNNTGG	2 cut(s)	1094, 1578
AccBSI	CCGCTC	1 cut(s)	311
AccII	CGCG	1 cut(s)	191
AciI	CCGC	7 cut(s)	186, 189, 191, 204, 311, 470, 1194
AclWI	GGATC	5 cut(s)	683, 696, 782, 1220, 1233
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	746, 1109
AcuI	CTGAAG	3 cut(s)	885, 888, 1268
AcyI	GRCGYC	2 cut(s)	5, 207
AfaI	GTAC	5 cut(s)	402, 683, 1033, 1037, 1434
AfiI	CCNNNNNNNGG	4 cut(s)	195, 797, 1094, 1578
AflII	CTTAAG	1 cut(s)	317
AgsI	TTSAA	8 cut(s)	61, 69, 627, 745, 755, 806, 1403, 1538
AhlI	ACTAGT	1 cut(s)	641
AjiI	CACGTC	1 cut(s)	298
Alw21I	GWGCWC	2 cut(s)	623, 1444
Alw26I	GTCTC	3 cut(s)	56, 388, 1389
AlwI	GGATC	5 cut(s)	683, 696, 782, 1220, 1233
Ama87I	CYCGRG	1 cut(s)	1392
AoxI	GGCC	4 cut(s)	197, 300, 489, 1452
ApeKI	GCWGC	2 cut(s)	472, 863
ApoI	RAATTY	2 cut(s)	746, 1109
AspLEI	GCGC	2 cut(s)	163, 209
AspS9I	GGNCC	2 cut(s)	198, 1453
AsuC2I	CCSGG	2 cut(s)	201, 493
AsuHPI	GGTGA	2 cut(s)	305, 797
AvaI	CYCGRG	1 cut(s)	1392
BaeGI	GKGCMC	1 cut(s)	834
BamHI	GGATCC	2 cut(s)	688, 1225
BanI	GGYRCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	623
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
Bbv12I	GWGCWC	2 cut(s)	623, 1444
BbvI	GCAGC	2 cut(s)	459, 875
BccI	CCATC	4 cut(s)	728, 776, 810, 1054
BceAI	ACGGC	3 cut(s)	194, 628, 1397
BcgI	CGANNNNNNTGC	2 cut(s)	1373, 1407
BcnI	CCSGG	2 cut(s)	201, 493
BcoDI	GTCTC	3 cut(s)	56, 388, 1389
BcuI	ACTAGT	1 cut(s)	641
BfaI	CTAG	3 cut(s)	150, 642, 1143
BfmI	CTRYAG	2 cut(s)	700, 1230
BfoI	RGCGCY	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	26
BisI	GCNGC	6 cut(s)	186, 189, 205, 470, 473, 864
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	6 cut(s)	187, 190, 206, 471, 474, 865
Bme1390I	CCNGG	2 cut(s)	201, 493
BmeT110I	CYCGRG	1 cut(s)	1392
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	198, 1453
BmiI	GGNNCC	3 cut(s)	208, 690, 1227
BmrFI	CCNGG	2 cut(s)	201, 493
BmrI	ACTGGG	1 cut(s)	694
BmuI	ACTGGG	1 cut(s)	694
Bpu1102I	GCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	2 cut(s)	497, 1325
BpuMI	CCSGG	2 cut(s)	201, 493
BsaAI	YACGTR	1 cut(s)	1035
BsaBI	GATNNNNATC	2 cut(s)	786, 792
BsaHI	GRCGYC	2 cut(s)	5, 207
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	3 cut(s)	9, 189, 492
BsaWI	WCCGGW	1 cut(s)	1323
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 797, 1094, 1578
Bse118I	RCCGGY	2 cut(s)	163, 302
Bse1I	ACTGG	2 cut(s)	689, 1039
Bse3DI	GCAATG	4 cut(s)	180, 258, 1153, 1167
Bse8I	GATNNNNATC	2 cut(s)	786, 792
BseDI	CCNNGG	3 cut(s)	9, 189, 492
BseGI	GGATG	1 cut(s)	673
BseJI	GATNNNNATC	2 cut(s)	786, 792
BseLI	CCNNNNNNNGG	4 cut(s)	195, 797, 1094, 1578
BseMI	GCAATG	4 cut(s)	180, 258, 1153, 1167
BseMII	CTCAG	4 cut(s)	347, 456, 489, 1199
BseNI	ACTGG	2 cut(s)	689, 1039
BseSI	GKGCMC	1 cut(s)	834
BseXI	GCAGC	2 cut(s)	459, 875
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	4 cut(s)	199, 302, 491, 1454
BshNI	GGYRCC	1 cut(s)	206
BsiHKAI	GWGCWC	2 cut(s)	623, 1444
BsiHKCI	CYCGRG	1 cut(s)	1392
BsiSI	CCGG	5 cut(s)	164, 201, 303, 492, 1324
BslFI	GGGAC	2 cut(s)	109, 1185
BslI	CCNNNNNNNGG	4 cut(s)	195, 797, 1094, 1578
BsmAI	GTCTC	3 cut(s)	56, 388, 1389
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	109, 1185
BsnI	GGCC	4 cut(s)	199, 302, 491, 1454
Bso31I	GGTCTC	1 cut(s)	388
BsoBI	CYCGRG	1 cut(s)	1392
Bsp1286I	GDGCHC	3 cut(s)	623, 834, 1444
Bsp143I	GATC	4 cut(s)	688, 787, 1225, 1411
Bsp1720I	GCTNAGC	1 cut(s)	465
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	7 cut(s)	186, 189, 191, 204, 311, 470, 1194
BspANI	GGCC	4 cut(s)	199, 302, 491, 1454
BspCNI	CTCAG	4 cut(s)	346, 457, 490, 1200
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	3 cut(s)	208, 690, 1227
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	5 cut(s)	683, 696, 782, 1220, 1233
BspQI	GCTCTTC	2 cut(s)	628, 864
BspT107I	GGYRCC	1 cut(s)	206
BspTI	CTTAAG	1 cut(s)	317
BspTNI	GGTCTC	1 cut(s)	388
BsrBI	CCGCTC	1 cut(s)	311
BsrDI	GCAATG	4 cut(s)	180, 258, 1153, 1167
BsrFI	RCCGGY	2 cut(s)	163, 302
BsrI	ACTGG	2 cut(s)	689, 1039
BssAI	RCCGGY	2 cut(s)	163, 302
BssECI	CCNNGG	3 cut(s)	9, 189, 492
BssMI	GATC	4 cut(s)	688, 787, 1225, 1411
BssNI	GRCGYC	2 cut(s)	5, 207
BssT1I	CCWWGG	1 cut(s)	9
Bst4CI	ACNGT	4 cut(s)	289, 951, 1234, 1465
Bst6I	CTCTTC	4 cut(s)	33, 628, 864, 972
BstACI	GRCGYC	2 cut(s)	5, 207
BstAFI	CTTAAG	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	1014
BstBAI	YACGTR	1 cut(s)	1035
BstC8I	GCNNGC	5 cut(s)	178, 249, 304, 348, 876
BstDEI	CTNAG	5 cut(s)	333, 465, 498, 1208, 1421
BstDSI	CCRYGG	2 cut(s)	9, 189
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	2 cut(s)	163, 209
BstKTI	GATC	4 cut(s)	691, 790, 1228, 1414
BstMAI	GTCTC	3 cut(s)	56, 388, 1389
BstMBI	GATC	4 cut(s)	688, 787, 1225, 1411
BstSCI	CCNGG	2 cut(s)	199, 491
BstSFI	CTRYAG	2 cut(s)	700, 1230
BstSLI	GKGCMC	1 cut(s)	834
BstSNI	TACGTA	1 cut(s)	1035
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	459, 875
BstX2I	RGATCY	2 cut(s)	688, 1225
BstYI	RGATCY	2 cut(s)	688, 1225
BsuRI	GGCC	4 cut(s)	199, 302, 491, 1454
BtgI	CCRYGG	2 cut(s)	9, 189
BtgZI	GCGATG	2 cut(s)	411, 795
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	1 cut(s)	909
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	5 cut(s)	178, 249, 304, 348, 876
CfoI	GCGC	2 cut(s)	163, 209
Cfr10I	RCCGGY	2 cut(s)	163, 302
Cfr13I	GGNCC	2 cut(s)	198, 1453
Cfr42I	CCGCGG	1 cut(s)	192
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	5 cut(s)	401, 682, 1032, 1036, 1433
CspCI	CAANNNNNGTGG	2 cut(s)	1149, 1184
CviAII	CATG	4 cut(s)	10, 326, 368, 1450
CviQI	GTAC	5 cut(s)	401, 682, 1032, 1036, 1433
DdeI	CTNAG	5 cut(s)	333, 465, 498, 1208, 1421
DinI	GGCGCC	1 cut(s)	208
DpnI	GATC	4 cut(s)	690, 789, 1227, 1413
DpnII	GATC	4 cut(s)	688, 787, 1225, 1411
DraI	TTTAAA	1 cut(s)	994
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	4 cut(s)	33, 628, 864, 972
EarI	CTCTTC	4 cut(s)	33, 628, 864, 972
Ecl136II	GAGCTC	1 cut(s)	621
Eco105I	TACGTA	1 cut(s)	1035
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	623
Eco31I	GGTCTC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	621
Eco57I	CTGAAG	3 cut(s)	885, 888, 1268
Eco88I	CYCGRG	1 cut(s)	1392
EcoICRI	GAGCTC	1 cut(s)	621
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	623
EgeI	GGCGCC	1 cut(s)	208
EheI	GGCGCC	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	4 cut(s)	13, 329, 371, 1453
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	2 cut(s)	109, 1185
FatI	CATG	4 cut(s)	9, 325, 367, 1449
FauI	CCCGC	2 cut(s)	304, 1187
Fnu4HI	GCNGC	6 cut(s)	186, 189, 205, 470, 473, 864
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	1 cut(s)	623
Fsp4HI	GCNGC	6 cut(s)	186, 189, 205, 470, 473, 864
FspBI	CTAG	3 cut(s)	150, 642, 1143
GlaI	GCGC	2 cut(s)	162, 208
GluI	GCNGC	6 cut(s)	186, 189, 205, 470, 473, 864
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	4 cut(s)	199, 302, 491, 1454
HapII	CCGG	5 cut(s)	164, 201, 303, 492, 1324
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	2 cut(s)	163, 209
Hin1I	GRCGYC	2 cut(s)	5, 207
Hin1II	CATG	4 cut(s)	13, 329, 371, 1453
Hin6I	GCGC	2 cut(s)	161, 207
HinP1I	GCGC	2 cut(s)	161, 207
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	2 cut(s)	755, 980
HpaII	CCGG	5 cut(s)	164, 201, 303, 492, 1324
HphI	GGTGA	2 cut(s)	305, 797
Hpy166II	GTNNAC	2 cut(s)	265, 1181
Hpy188III	TCNNGA	5 cut(s)	214, 665, 887, 1342, 1394
Hpy8I	GTNNAC	2 cut(s)	265, 1181
Hpy99I	CGWCG	2 cut(s)	215, 714
HpyAV	CCTTC	5 cut(s)	240, 386, 475, 587, 1312
HpyCH4III	ACNGT	4 cut(s)	289, 951, 1234, 1465
HpyCH4IV	ACGT	3 cut(s)	297, 408, 1034
HpyCH4V	TGCA	5 cut(s)	346, 563, 863, 1017, 1151
HpyF3I	CTNAG	5 cut(s)	333, 465, 498, 1208, 1421
HpySE526I	ACGT	3 cut(s)	297, 408, 1034
Hsp92I	GRCGYC	2 cut(s)	5, 207
Hsp92II	CATG	4 cut(s)	13, 329, 371, 1453
HspAI	GCGC	2 cut(s)	161, 207
KasI	GGCGCC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
KspI	CCGCGG	1 cut(s)	192
Kzo9I	GATC	4 cut(s)	688, 787, 1225, 1411
LguI	GCTCTTC	2 cut(s)	628, 864
LmnI	GCTCC	2 cut(s)	327, 883
Lsp1109I	GCAGC	2 cut(s)	459, 875
MaeI	CTAG	3 cut(s)	150, 642, 1143
MaeII	ACGT	3 cut(s)	297, 408, 1034
MaeIII	GTNAC	2 cut(s)	225, 293
MalI	GATC	4 cut(s)	690, 789, 1227, 1413
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	4 cut(s)	688, 787, 1225, 1411
MboII	GAAGA	9 cut(s)	20, 288, 291, 615, 648, 818, 832, 881, 989
MflI	RGATCY	2 cut(s)	688, 1225
MhlI	GDGCHC	3 cut(s)	623, 834, 1444
Mly113I	GGCGCC	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	989
MmeI	TCCRAC	3 cut(s)	938, 963, 1503
MroNI	GCCGGC	1 cut(s)	302
MseI	TTAA	7 cut(s)	318, 588, 968, 993, 999, 1185, 1220
MspA1I	CMGCKG	3 cut(s)	191, 472, 866
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	5 cut(s)	164, 201, 303, 492, 1324
MspR9I	CCNGG	2 cut(s)	201, 493
MvnI	CGCG	1 cut(s)	191
NaeI	GCCGGC	1 cut(s)	304
NarI	GGCGCC	1 cut(s)	207
NciI	CCSGG	2 cut(s)	201, 493
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	4 cut(s)	688, 787, 1225, 1411
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	4 cut(s)	13, 329, 371, 1453
NlaIV	GGNNCC	3 cut(s)	208, 690, 1227
NmuCI	GTSAC	1 cut(s)	293
PaeR7I	CTCGAG	1 cut(s)	1392
PciSI	GCTCTTC	2 cut(s)	628, 864
PdiI	GCCGGC	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	755
PflMI	CCANNNNNTGG	2 cut(s)	1094, 1578
PkrI	GCNGC	6 cut(s)	187, 190, 206, 471, 474, 865
PleI	GAGTC	1 cut(s)	988
PluTI	GGCGCC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	988
Ppu21I	YACGTR	1 cut(s)	1035
PsiI	TTATAA	1 cut(s)	1265
Psp124BI	GAGCTC	1 cut(s)	623
PspN4I	GGNNCC	3 cut(s)	208, 690, 1227
PspPI	GGNCC	2 cut(s)	198, 1453
PsuI	RGATCY	2 cut(s)	688, 1225
PvuII	CAGCTG	1 cut(s)	866
RsaI	GTAC	5 cut(s)	402, 683, 1033, 1037, 1434
RsaNI	GTAC	5 cut(s)	401, 682, 1032, 1036, 1433
SacI	GAGCTC	1 cut(s)	623
SacII	CCGCGG	1 cut(s)	192
SapI	GCTCTTC	2 cut(s)	628, 864
SaqAI	TTAA	7 cut(s)	318, 588, 968, 993, 999, 1185, 1220
SatI	GCNGC	6 cut(s)	186, 189, 205, 470, 473, 864
Sau3AI	GATC	4 cut(s)	688, 787, 1225, 1411
Sau96I	GGNCC	2 cut(s)	198, 1453
SchI	GAGTC	1 cut(s)	989
ScrFI	CCNGG	2 cut(s)	201, 493
SduI	GDGCHC	3 cut(s)	623, 834, 1444
SfcI	CTRYAG	2 cut(s)	700, 1230
SfoI	GGCGCC	1 cut(s)	208
Sfr274I	CTCGAG	1 cut(s)	1392
Sfr303I	CCGCGG	1 cut(s)	192
SgrBI	CCGCGG	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	1392
SmlI	CTYRAG	4 cut(s)	317, 476, 1340, 1392
SmoI	CTYRAG	4 cut(s)	317, 476, 1340, 1392
SnaBI	TACGTA	1 cut(s)	1035
SpeI	ACTAGT	1 cut(s)	641
SsiI	CCGC	7 cut(s)	186, 189, 191, 204, 311, 470, 1194
SspDI	GGCGCC	1 cut(s)	206
SspI	AATATT	1 cut(s)	990
SspMI	CTAG	3 cut(s)	150, 642, 1143
SstI	GAGCTC	1 cut(s)	623
StyD4I	CCNGG	2 cut(s)	199, 491
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	4 cut(s)	289, 951, 1234, 1465
TaiI	ACGT	3 cut(s)	300, 411, 1037
TaqI	TCGA	3 cut(s)	142, 213, 1393
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	4 cut(s)	188, 191, 207, 472
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	7 cut(s)	318, 588, 968, 993, 999, 1185, 1220
Tru9I	TTAA	7 cut(s)	318, 588, 968, 993, 999, 1185, 1220
TscAI	CASTG	1 cut(s)	909
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	472, 863
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	7 cut(s)	405, 442, 507, 684, 936, 990, 1572
TspRI	CASTG	1 cut(s)	909
Van91I	CCANNNNNTGG	2 cut(s)	1094, 1578
Vha464I	CTTAAG	1 cut(s)	317
XapI	RAATTY	2 cut(s)	746, 1109
XhoI	CTCGAG	1 cut(s)	1392
XspI	CTAG	3 cut(s)	150, 642, 1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.