Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013078.1

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

1719 .. 5171

Gene Structure 3453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013078.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atggtagaagaattcaatgttccattaatgtgcattatgctgaggagaagcgaatgtaaagctcgggaatgccgggaaagcaagcgagtggaaactcagggatgccgagaaggcaagagcgttagagctcggggatgccatgaggcattaacgggccctctgaagagtcccaaacttctggttataaacctccgtatagtcggaaaattgtttgatgaggggagttgcgaggagaaaatcttgactgcaatgccgcgtagcgatcattgtcactgtgaggtgttgccttaccgcttggcggtgacgaagaatcccatcgtagtggtaccggtgaaagttgattgcctcccgaaaggtaggccctcgcctcatatccaaatcctcactttttcggtctttcccgactgcctccacacctttcctctctcccaaacccctattttccccgggttctcttccaaggttcgagattctagggtttcggtgacagtcgttcgagccagcctcgacgcagtcaccgggattaggcctggcggagctatcgagagcgataagctacagtccgatgtgaggaagcgcaccatggacgttgtcgatgcctgcggagggagagtgacgattggtgacgtctctagcagagctgggctcaagctcaatgggggctcagaacgctttgcaggctctcgctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.2

Weight (kDa)

9.25

Isoelectric Point (pI)

57.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	185
AatII	GACGTC	1 cut(s)	630
Acc65I	GGTACC	1 cut(s)	325
AccB1I	GGYRCC	1 cut(s)	325
AccII	CGCG	1 cut(s)	256
AciI	CCGC	5 cut(s)	254, 292, 299, 534, 603
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	627
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	4 cut(s)	298, 525, 570, 606
AgeI	ACCGGT	1 cut(s)	328
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	6 cut(s)	62, 128, 539, 556, 641, 652
AluI	AGCT	6 cut(s)	62, 128, 539, 556, 641, 652
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	634
Ama87I	CYCGRG	3 cut(s)	63, 129, 446
AoxI	GGCC	3 cut(s)	154, 359, 527
ApaI	GGGCCC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	687
ApoI	RAATTY	1 cut(s)	11
AseI	ATTAAT	1 cut(s)	26
AsiGI	ACCGGT	1 cut(s)	328
Asp718I	GGTACC	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	3 cut(s)	154, 155, 360
AsuC2I	CCSGG	4 cut(s)	74, 447, 448, 520
AsuHPI	GGTGA	5 cut(s)	313, 343, 496, 508, 635
AvaI	CYCGRG	3 cut(s)	63, 129, 446
BaeGI	GKGCMC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	325
BanII	GRGCYC	4 cut(s)	130, 158, 648, 665
Bbv12I	GWGCWC	1 cut(s)	130
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	674
BccI	CCATC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	531
BcnI	CCSGG	4 cut(s)	74, 447, 448, 520
BcoDI	GTCTC	1 cut(s)	634
BfaI	CTAG	2 cut(s)	474, 633
BfmI	CTRYAG	1 cut(s)	557
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	2 cut(s)	254, 688
BlsI	GCNGC	2 cut(s)	255, 689
Bme1390I	CCNGG	5 cut(s)	74, 447, 448, 520, 531
BmeT110I	CYCGRG	3 cut(s)	63, 129, 446
BmgT120I	GGNCC	3 cut(s)	154, 155, 360
BmiI	GGNNCC	2 cut(s)	156, 327
BmrFI	CCNGG	5 cut(s)	74, 447, 448, 520, 531
BmsI	GCATC	3 cut(s)	92, 125, 586
BplI	GAGNNNNNCTC	4 cut(s)	489, 521, 630, 662
Bpu10I	CCTNAGC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	632
BpuMI	CCSGG	4 cut(s)	74, 447, 448, 520
BsaHI	GRCGYC	1 cut(s)	627
BsaJI	CCNNGG	4 cut(s)	445, 446, 459, 582
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	4 cut(s)	298, 525, 570, 606
Bse118I	RCCGGY	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	4 cut(s)	445, 446, 459, 582
BseGI	GGATG	2 cut(s)	107, 140
BseLI	CCNNNNNNNGG	4 cut(s)	298, 525, 570, 606
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	3 cut(s)	32, 110, 678
BseRI	GAGGAG	2 cut(s)	58, 245
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	674
BseYI	CCCAGC	1 cut(s)	641
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	3 cut(s)	156, 361, 529
BshNI	GGYRCC	1 cut(s)	325
BshTI	ACCGGT	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	130
BsiHKCI	CYCGRG	3 cut(s)	63, 129, 446
BsiSI	CCGG	4 cut(s)	73, 329, 447, 519
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	4 cut(s)	298, 525, 570, 606
BsmAI	GTCTC	1 cut(s)	634
BsmBI	CGTCTC	1 cut(s)	634
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	3 cut(s)	156, 361, 529
BsoBI	CYCGRG	3 cut(s)	63, 129, 446
Bsp120I	GGGCCC	1 cut(s)	154
Bsp1286I	GDGCHC	4 cut(s)	130, 158, 648, 665
Bsp143I	GATC	1 cut(s)	262
Bsp19I	CCATGG	1 cut(s)	582
BspACI	CCGC	5 cut(s)	254, 292, 299, 534, 603
BspANI	GGCC	3 cut(s)	156, 361, 529
BspCNI	CTCAG	3 cut(s)	33, 109, 677
BspFNI	CGCG	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	156, 327
BspT107I	GGYRCC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	4 cut(s)	445, 446, 459, 582
BssMI	GATC	1 cut(s)	262
BssNI	GRCGYC	1 cut(s)	627
BssT1I	CCWWGG	2 cut(s)	459, 582
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	3 cut(s)	275, 490, 561
Bst6I	CTCTTC	2 cut(s)	158, 460
BstACI	GRCGYC	1 cut(s)	627
BstC8I	GCNNGC	4 cut(s)	83, 502, 601, 679
BstDEI	CTNAG	3 cut(s)	41, 96, 664
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	2 cut(s)	107, 140
BstFNI	CGCG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 111, 669, 678, 687
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	5 cut(s)	72, 445, 446, 518, 529
BstSFI	CTRYAG	1 cut(s)	557
BstSLI	GKGCMC	1 cut(s)	158
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	674
BstXI	CCANNNNNNTGG	2 cut(s)	178, 322
BsuRI	GGCC	3 cut(s)	156, 361, 529
BtgI	CCRYGG	1 cut(s)	582
BtsCI	GGATG	2 cut(s)	107, 140
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	4 cut(s)	83, 502, 601, 679
CfoI	GCGC	1 cut(s)	579
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	3 cut(s)	154, 155, 360
Cfr9I	CCCGGG	1 cut(s)	446
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	326
CspAI	ACCGGT	1 cut(s)	328
CviAII	CATG	2 cut(s)	140, 583
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	3 cut(s)	41, 96, 664
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
Eam1104I	CTCTTC	2 cut(s)	158, 460
EarI	CTCTTC	2 cut(s)	158, 460
EciI	GGCGGA	1 cut(s)	549
Ecl136II	GAGCTC	1 cut(s)	128
Eco130I	CCWWGG	2 cut(s)	459, 582
Eco147I	AGGCCT	1 cut(s)	529
Eco24I	GRGCYC	4 cut(s)	130, 158, 648, 665
Eco53kI	GAGCTC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	3 cut(s)	63, 129, 446
EcoICRI	GAGCTC	1 cut(s)	128
EcoO109I	RGGNCCY	2 cut(s)	155, 360
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	2 cut(s)	459, 582
EcoT38I	GRGCYC	4 cut(s)	130, 158, 648, 665
ErhI	CCWWGG	2 cut(s)	459, 582
Esp3I	CGTCTC	1 cut(s)	634
FaeI	CATG	2 cut(s)	143, 586
FaiI	YATR	6 cut(s)	38, 141, 185, 197, 372, 584
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	2 cut(s)	139, 582
Fnu4HI	GCNGC	2 cut(s)	254, 688
FokI	GGATG	2 cut(s)	114, 147
FriOI	GRGCYC	4 cut(s)	130, 158, 648, 665
Fsp4HI	GCNGC	2 cut(s)	254, 688
FspBI	CTAG	2 cut(s)	474, 633
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	2 cut(s)	254, 688
GsaI	CCCAGC	1 cut(s)	645
HaeIII	GGCC	3 cut(s)	156, 361, 529
HapII	CCGG	4 cut(s)	73, 329, 447, 519
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	1 cut(s)	579
Hin1I	GRCGYC	1 cut(s)	627
Hin1II	CATG	2 cut(s)	143, 586
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HinfI	GANTC	3 cut(s)	166, 310, 470
HpaII	CCGG	4 cut(s)	73, 329, 447, 519
HphI	GGTGA	5 cut(s)	313, 343, 496, 508, 635
Hpy188I	TCNGA	4 cut(s)	162, 203, 565, 667
Hpy188III	TCNNGA	6 cut(s)	65, 241, 349, 401, 467, 544
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	3 cut(s)	275, 490, 561
HpyCH4IV	ACGT	2 cut(s)	588, 627
HpyCH4V	TGCA	3 cut(s)	33, 248, 677
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 111, 669, 678, 687
HpyF3I	CTNAG	3 cut(s)	41, 96, 664
HpySE526I	ACGT	2 cut(s)	588, 627
Hsp92I	GRCGYC	1 cut(s)	627
Hsp92II	CATG	2 cut(s)	143, 586
HspAI	GCGC	1 cut(s)	577
KpnI	GGTACC	1 cut(s)	329
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	536
Lsp1109I	GCAGC	1 cut(s)	674
LweI	GCATC	3 cut(s)	92, 125, 586
MaeI	CTAG	2 cut(s)	474, 633
MaeII	ACGT	2 cut(s)	588, 627
MaeIII	GTNAC	6 cut(s)	269, 301, 484, 514, 613, 623
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	4 cut(s)	20, 175, 319, 447
MhlI	GDGCHC	4 cut(s)	130, 158, 648, 665
MluCI	AATT	2 cut(s)	11, 206
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	181
MseI	TTAA	2 cut(s)	26, 149
MslI	CAYNNNNRTG	2 cut(s)	28, 320
MspI	CCGG	4 cut(s)	73, 329, 447, 519
MspR9I	CCNGG	5 cut(s)	74, 447, 448, 520, 531
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	531
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	5 cut(s)	78, 111, 669, 678, 687
NciI	CCSGG	4 cut(s)	74, 447, 448, 520
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	2 cut(s)	143, 586
NlaIV	GGNNCC	2 cut(s)	156, 327
NmeAIII	GCCGAG	1 cut(s)	131
NmuCI	GTSAC	6 cut(s)	269, 301, 484, 514, 613, 623
PceI	AGGCCT	1 cut(s)	529
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	310, 470
PflFI	GACNNNGTC	2 cut(s)	512, 590
PinAI	ACCGGT	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	255, 689
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PshBI	ATTAAT	1 cut(s)	26
PsiI	TTATAA	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	156, 327
PspOMI	GGGCCC	1 cut(s)	154
PspPI	GGNCC	3 cut(s)	154, 155, 360
PsyI	GACNNNGTC	2 cut(s)	512, 590
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
RseI	CAYNNNNRTG	2 cut(s)	28, 320
SacI	GAGCTC	1 cut(s)	130
SaqAI	TTAA	2 cut(s)	26, 149
SatI	GCNGC	2 cut(s)	254, 688
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	3 cut(s)	154, 155, 360
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	5 cut(s)	74, 447, 448, 520, 531
SduI	GDGCHC	4 cut(s)	130, 158, 648, 665
SfaNI	GCATC	3 cut(s)	92, 125, 586
SfcI	CTRYAG	1 cut(s)	557
SmaI	CCCGGG	1 cut(s)	448
SmiMI	CAYNNNNRTG	2 cut(s)	28, 320
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
Sse9I	AATT	2 cut(s)	11, 206
SseBI	AGGCCT	1 cut(s)	529
SsiI	CCGC	5 cut(s)	254, 292, 299, 534, 603
SspMI	CTAG	2 cut(s)	474, 633
SstI	GAGCTC	1 cut(s)	130
StuI	AGGCCT	1 cut(s)	529
StyD4I	CCNGG	5 cut(s)	72, 445, 446, 518, 529
StyI	CCWWGG	2 cut(s)	459, 582
TaaI	ACNGT	3 cut(s)	275, 490, 561
TaiI	ACGT	2 cut(s)	591, 630
TaqI	TCGA	5 cut(s)	466, 496, 507, 543, 594
TaqII	GACCGA	1 cut(s)	382
TasI	AATT	2 cut(s)	11, 206
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	2 cut(s)	310, 470
Tru1I	TTAA	2 cut(s)	26, 149
Tru9I	TTAA	2 cut(s)	26, 149
TscAI	CASTG	1 cut(s)	278
TseFI	GTSAC	6 cut(s)	269, 301, 484, 514, 613, 623
TseI	GCWGC	1 cut(s)	687
Tsp45I	GTSAC	6 cut(s)	269, 301, 484, 514, 613, 623
TspGWI	ACGGA	1 cut(s)	182
TspMI	CCCGGG	1 cut(s)	446
TspRI	CASTG	1 cut(s)	278
Tth111I	GACNNNGTC	2 cut(s)	512, 590
VspI	ATTAAT	1 cut(s)	26
XapI	RAATTY	1 cut(s)	11
XmaI	CCCGGG	1 cut(s)	446
XspI	CTAG	2 cut(s)	474, 633
ZraI	GACGTC	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.