Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Forward (+)

37878665 .. 37879021

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCATCCATGGCTACCTGCTTCACTCTTCCACCAAACCCTCGTCATCTTCTCGTTTTCAAAGCTGCACTTTTACCTAATCGTTCCCAAAACTTCAATTTCCCGGGCGCTGCCTCCAGGGTTCCACAATCTAGGGCTTCCGCGCCGGTTGTCGAGCCAGCATTGCAGCGATCAGGCCCGGCTGCACCGTCGAGAGCGCTAAGTTACCTTCTCGACTTGAGAAAGCGAGCAATGGACGCTGTGGAAGCTTGTGGAAGAAGAGTGACTGTTGGTGACGTGGCCGGCAGAGCTGGGCCTAAGCTCCATGAGGCTCAGAACGCTTTGCAAGCTCTCGCTTCGATACTCGGGGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

12.43

Weight (kDa)

10.77

Isoelectric Point (pI)

66.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	26
AccII	CGCG	1 cut(s)	143
AciI	CCGC	1 cut(s)	141
AcoI	YGGCCR	1 cut(s)	279
AfeI	AGCGCT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	61, 97
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	5 cut(s)	65, 248, 290, 301, 329
AluI	AGCT	5 cut(s)	65, 248, 290, 301, 329
Ama87I	CYCGRG	2 cut(s)	103, 344
Aor51HI	AGCGCT	1 cut(s)	198
AoxI	GGCC	3 cut(s)	175, 279, 293
ApeKI	GCWGC	4 cut(s)	65, 110, 166, 182
AspLEI	GCGC	3 cut(s)	110, 145, 199
AspS9I	GGNCC	2 cut(s)	176, 293
AsuC2I	CCSGG	3 cut(s)	104, 105, 179
AsuHPI	GGTGA	1 cut(s)	284
AvaI	CYCGRG	2 cut(s)	103, 344
BbvI	GCAGC	4 cut(s)	52, 97, 169, 178
BciT130I	CCWGG	1 cut(s)	118
BcnI	CCSGG	3 cut(s)	104, 105, 179
BfaI	CTAG	1 cut(s)	132
BfoI	RGCGCY	2 cut(s)	111, 200
BfuAI	ACCTGC	1 cut(s)	26
BisI	GCNGC	4 cut(s)	66, 111, 167, 183
BlsI	GCNGC	4 cut(s)	67, 112, 168, 184
Bme1390I	CCNGG	4 cut(s)	104, 105, 118, 179
BmeT110I	CYCGRG	2 cut(s)	103, 344
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	176, 293
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	4 cut(s)	104, 105, 118, 179
BmsI	GCATC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	238
BpuMI	CCSGG	3 cut(s)	104, 105, 179
BsaJI	CCNNGG	3 cut(s)	9, 103, 117
Bse118I	RCCGGY	2 cut(s)	145, 281
Bse3DI	GCAATG	2 cut(s)	161, 237
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	3 cut(s)	9, 103, 117
BseGI	GGATG	1 cut(s)	5
BseMI	GCAATG	2 cut(s)	161, 237
BseMII	CTCAG	1 cut(s)	326
BseXI	GCAGC	4 cut(s)	52, 97, 169, 178
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	2 cut(s)	51, 168
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	3 cut(s)	177, 281, 295
BsiHKCI	CYCGRG	2 cut(s)	103, 344
BsiSI	CCGG	4 cut(s)	104, 146, 179, 282
BsnI	GGCC	3 cut(s)	177, 281, 295
BsoBI	CYCGRG	2 cut(s)	103, 344
Bsp143I	GATC	1 cut(s)	170
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	3 cut(s)	177, 281, 295
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	123
BspMI	ACCTGC	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	161, 237
BsrFI	RCCGGY	2 cut(s)	145, 281
BssAI	RCCGGY	2 cut(s)	145, 281
BssECI	CCNNGG	3 cut(s)	9, 103, 117
BssMI	GATC	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	189, 268
Bst6I	CTCTTC	2 cut(s)	33, 253
BstC8I	GCNNGC	4 cut(s)	159, 228, 283, 327
BstDEI	CTNAG	4 cut(s)	200, 297, 312, 354
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	2 cut(s)	111, 200
BstHHI	GCGC	3 cut(s)	110, 145, 199
BstKTI	GATC	1 cut(s)	173
BstMBI	GATC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 163, 236, 245, 287, 317, 326
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	4 cut(s)	102, 103, 116, 177
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	4 cut(s)	52, 97, 169, 178
BsuRI	GGCC	3 cut(s)	177, 281, 295
BtgI	CCRYGG	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	5
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	4 cut(s)	159, 228, 283, 327
CfoI	GCGC	3 cut(s)	110, 145, 199
Cfr10I	RCCGGY	2 cut(s)	145, 281
Cfr13I	GGNCC	2 cut(s)	176, 293
Cfr9I	CCCGGG	1 cut(s)	103
CseI	GACGC	1 cut(s)	245
CviAII	CATG	2 cut(s)	10, 305
DdeI	CTNAG	4 cut(s)	200, 297, 312, 354
DpnI	GATC	1 cut(s)	172
DpnII	GATC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	33, 253
EarI	CTCTTC	2 cut(s)	33, 253
Eco130I	CCWWGG	1 cut(s)	9
Eco47III	AGCGCT	1 cut(s)	198
Eco88I	CYCGRG	2 cut(s)	103, 344
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	2 cut(s)	13, 308
FaiI	YATR	2 cut(s)	11, 306
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	2 cut(s)	9, 304
Fnu4HI	GCNGC	4 cut(s)	66, 111, 167, 183
Fsp4HI	GCNGC	4 cut(s)	66, 111, 167, 183
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	3 cut(s)	109, 144, 198
GluI	GCNGC	4 cut(s)	66, 111, 167, 183
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	100
HaeII	RGCGCY	2 cut(s)	111, 200
HaeIII	GGCC	3 cut(s)	177, 281, 295
HapII	CCGG	4 cut(s)	104, 146, 179, 282
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	3 cut(s)	110, 145, 199
Hin1II	CATG	2 cut(s)	13, 308
Hin6I	GCGC	3 cut(s)	108, 143, 197
HinP1I	GCGC	3 cut(s)	108, 143, 197
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	4 cut(s)	104, 146, 179, 282
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	2 cut(s)	192, 212
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	2 cut(s)	189, 268
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	4 cut(s)	68, 166, 185, 325
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 163, 236, 245, 287, 317, 326
HpyF3I	CTNAG	4 cut(s)	200, 297, 312, 354
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	13, 308
HspAI	GCGC	3 cut(s)	108, 143, 197
KroI	GCCGGC	1 cut(s)	281
KroNI	GCCGGC	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	170
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	4 cut(s)	52, 97, 169, 178
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	203, 262, 272
MalI	GATC	1 cut(s)	172
MboI	GATC	1 cut(s)	170
MboII	GAAGA	4 cut(s)	20, 41, 267, 270
MluCI	AATT	1 cut(s)	97
MnlI	CCTC	3 cut(s)	51, 124, 301
MroNI	GCCGGC	1 cut(s)	281
MspI	CCGG	4 cut(s)	104, 146, 179, 282
MspR9I	CCNGG	4 cut(s)	104, 105, 118, 179
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	7 cut(s)	11, 163, 236, 245, 287, 317, 326
NaeI	GCCGGC	1 cut(s)	283
NciI	CCSGG	3 cut(s)	104, 105, 179
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	170
NgoMIV	GCCGGC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	13, 308
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	2 cut(s)	262, 272
PdiI	GCCGGC	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	4 cut(s)	67, 112, 168, 184
Psp6I	CCWGG	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	176, 293
SatI	GCNGC	4 cut(s)	66, 111, 167, 183
Sau3AI	GATC	1 cut(s)	170
Sau96I	GGNCC	2 cut(s)	176, 293
ScrFI	CCNGG	4 cut(s)	104, 105, 118, 179
SetI	ASST	9 cut(s)	20, 67, 79, 210, 250, 279, 292, 303, 331
SfaNI	GCATC	1 cut(s)	14
SmaI	CCCGGG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	4 cut(s)	102, 103, 116, 177
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	189, 268
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	153, 191, 213, 338
TasI	AATT	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	350
TseFI	GTSAC	2 cut(s)	262, 272
TseI	GCWGC	4 cut(s)	65, 110, 166, 182
Tsp45I	GTSAC	2 cut(s)	262, 272
TspMI	CCCGGG	1 cut(s)	103
XmaI	CCCGGG	1 cut(s)	103
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.