Rroxscaffold_6G00407830

protein At5g03900, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
30435806 .. 30439233
3428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407830.1

Sequence Viewer

Length: 936 bp
ATGCCAAGCTCAATGAGATTCGCCGCTTCTCAAATTGTTCAACGAGATTTGCAGAGTGATGATCACCACCATGACGACGACCAGCCACGCCTTCGTCTTCAACTTCGCTCTCATGCACAAGATAATGTTCCTCACCATGGTGGTGTTATTAGCCTCAACATGATCCATCGTGACACACCATCTTCTCCCTTATACAATTCTGATAGCGCCACCGAAACCTATATCCTTGAGCTTCAAGGCATTAGTGTTGGAGCCACCAATATCACGCTTAATGCAGATGCCAAGGCCTTTAAGGATGTGAAGCTAAAATCTGGCAACACTTTTGTTAGGGTGGATGATGAGACTGTTTGGTTAGCATTCTCCCGAGGCAAAGTGGTCACTAAAAGCCAGGAGCCAACTAGACTATGTGTTGACTTGCGAAGCAAGCCGGAGGGCACAAGGTCTTTGAAACCAATCAATGGCATCCATGGCTACCGCTTCACTCTTCCACCAAACCCTCGTCATCTTCTCGTTTTCAAAGCTGCACTTTTACCTAATCGTTCCCAAAACTTCAATTTCCCGGCGCCGCCTCCGTGGTTCCACAATCTAGGGCTTCCGCACCGGTTGTCGAGCCGCATTGCGCCGATCGTGCCCGCCGCACCGTCGAGAGCGCTAAGTTACCTTCGACGTGAGAAAGCGAGCAATGGACGCCGTGGAAGCTTGTGGAAGAAGAGTGATCGTTGCCTCGTTGGTGACGTGGCCGGCGTAGCCGGGCCTAAGCTCCACGAGGCTCGTAACGCTTTGCAAGCTCTCGCTTCGATACTCGTGATTCTTAGAGGCGATGTACTCTATGTTTTTCCCGCCGATTATCGAGCAAAACTTGTAGTTGAGCCGCTGCTTGAGAAGGCAAAGGTAGTGATGCTTATGGGATTTGATAATTTCTTCGTTGTGTTTTAA

Protein Analysis

311

Amino Acids

34.67

Weight (kDa)

9.92

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000516)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03900 AT5G03900
fragaria_vesca FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis pycom12g02390 pycom14g02210
rosa_chinensis RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 562
AccB7I CCANNNNNTGG 1 cut(s) 458
AciI CCGC 9 cut(s) 24, 475, 566, 596, 613, 633, 636, 840, 872
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 738
AcyI GRCGYC 2 cut(s) 563, 688
AfaI GTAC 1 cut(s) 825
AfeI AGCGCT 1 cut(s) 651
AfiI CCNNNNNNNGG 2 cut(s) 137, 458
AgeI ACCGGT 1 cut(s) 600
AgsI TTSAA 6 cut(s) 41, 101, 236, 448, 517, 553
AjiI CACGTC 2 cut(s) 668, 736
AjnI CCWGG 1 cut(s) 387
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 7 cut(s) 9, 232, 304, 521, 699, 760, 788
AluI AGCT 7 cut(s) 9, 232, 304, 521, 699, 760, 788
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 363
Aor51HI AGCGCT 1 cut(s) 651
AoxI GGCC 3 cut(s) 285, 738, 752
ApeKI GCWGC 2 cut(s) 521, 874
AsiGI ACCGGT 1 cut(s) 600
AspLEI GCGC 4 cut(s) 209, 565, 622, 652
AspS9I GGNCC 1 cut(s) 752
AsuC2I CCSGG 2 cut(s) 560, 751
AsuHPI GGTGA 3 cut(s) 56, 125, 743
AvaI CYCGRG 1 cut(s) 363
BaeGI GKGCMC 2 cut(s) 437, 633
BanI GGYRCC 1 cut(s) 562
BauI CACGAG 2 cut(s) 764, 803
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 508, 861
BccI CCATC 2 cut(s) 174, 187
BceAI ACGGC 1 cut(s) 675
BciT130I CCWGG 1 cut(s) 389
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 2 cut(s) 560, 751
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 2 cut(s) 399, 587
BfoI RGCGCY 3 cut(s) 210, 566, 653
BisI GCNGC 7 cut(s) 24, 522, 566, 613, 636, 872, 875
BlsI GCNGC 7 cut(s) 25, 523, 567, 614, 637, 873, 876
Bme1390I CCNGG 3 cut(s) 389, 560, 751
BmeT110I CYCGRG 1 cut(s) 363
BmgBI CACGTC 2 cut(s) 668, 736
BmgT120I GGNCC 1 cut(s) 752
BmiI GGNNCC 4 cut(s) 253, 393, 564, 578
BmrFI CCNGG 3 cut(s) 389, 560, 751
BmsI GCATC 3 cut(s) 268, 471, 888
BpiI GAAGAC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 756
BpuEI CTTGAG 2 cut(s) 248, 899
BpuMI CCSGG 2 cut(s) 560, 751
BsaHI GRCGYC 2 cut(s) 563, 688
BsaJI CCNNGG 6 cut(s) 136, 282, 364, 466, 572, 691
BsaWI WCCGGW 1 cut(s) 600
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 458
Bse118I RCCGGY 2 cut(s) 600, 740
Bse3DI GCAATG 2 cut(s) 615, 688
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 6 cut(s) 136, 282, 364, 466, 572, 691
BseGI GGATG 3 cut(s) 301, 340, 462
BseLI CCNNNNNNNGG 2 cut(s) 137, 458
BseMI GCAATG 2 cut(s) 615, 688
BseSI GKGCMC 2 cut(s) 437, 633
BseXI GCAGC 2 cut(s) 508, 861
BsgI GTGCAG 1 cut(s) 507
Bsh1285I CGRYCG 1 cut(s) 627
BshFI GGCC 3 cut(s) 287, 740, 754
BshNI GGYRCC 1 cut(s) 562
BshTI ACCGGT 1 cut(s) 600
BsiEI CGRYCG 1 cut(s) 627
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 5 cut(s) 428, 560, 601, 741, 750
BslI CCNNNNNNNGG 2 cut(s) 137, 458
BsmAI GTCTC 1 cut(s) 335
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 3 cut(s) 287, 740, 754
BsoBI CYCGRG 1 cut(s) 363
Bsp1286I GDGCHC 2 cut(s) 437, 633
Bsp143I GATC 4 cut(s) 61, 162, 624, 715
Bsp19I CCATGG 2 cut(s) 136, 466
BspACI CCGC 9 cut(s) 24, 475, 566, 596, 613, 633, 636, 840, 872
BspANI GGCC 3 cut(s) 287, 740, 754
BspLI GGNNCC 4 cut(s) 253, 393, 564, 578
BspPI GGATC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 562
BsrDI GCAATG 2 cut(s) 615, 688
BsrFI RCCGGY 2 cut(s) 600, 740
BssAI RCCGGY 2 cut(s) 600, 740
BssECI CCNNGG 6 cut(s) 136, 282, 364, 466, 572, 691
BssMI GATC 4 cut(s) 61, 162, 624, 715
BssNI GRCGYC 2 cut(s) 563, 688
BssSI CACGAG 2 cut(s) 764, 803
BssT1I CCWWGG 3 cut(s) 136, 282, 466
Bst2BI CACGAG 2 cut(s) 764, 803
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 2 cut(s) 346, 642
Bst6I CTCTTC 2 cut(s) 489, 704
BstACI GRCGYC 2 cut(s) 563, 688
BstC8I GCNNGC 5 cut(s) 425, 633, 679, 742, 786
BstDEI CTNAG 3 cut(s) 653, 756, 812
BstDSI CCRYGG 4 cut(s) 136, 466, 572, 691
BstF5I GGATG 3 cut(s) 301, 340, 462
BstH2I RGCGCY 3 cut(s) 210, 566, 653
BstHHI GCGC 4 cut(s) 209, 565, 622, 652
BstKTI GATC 4 cut(s) 64, 165, 627, 718
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 4 cut(s) 61, 162, 624, 715
BstMCI CGRYCG 1 cut(s) 627
BstMWI GCNNNNNNNGC 8 cut(s) 424, 468, 628, 687, 696, 746, 776, 785
BstNI CCWGG 1 cut(s) 389
BstSCI CCNGG 3 cut(s) 387, 558, 749
BstSLI GKGCMC 2 cut(s) 437, 633
BstV1I GCAGC 2 cut(s) 508, 861
BstV2I GAAGAC 1 cut(s) 89
BsuRI GGCC 3 cut(s) 287, 740, 754
BtgI CCRYGG 4 cut(s) 136, 466, 572, 691
BtgZI GCGATG 1 cut(s) 834
BtrI CACGTC 2 cut(s) 668, 736
BtsCI GGATG 3 cut(s) 301, 340, 462
Cac8I GCNNGC 5 cut(s) 425, 633, 679, 742, 786
CfoI GCGC 4 cut(s) 209, 565, 622, 652
Cfr10I RCCGGY 2 cut(s) 600, 740
Cfr13I GGNCC 1 cut(s) 752
CseI GACGC 1 cut(s) 696
Csp6I GTAC 1 cut(s) 824
CspAI ACCGGT 1 cut(s) 600
CviAII CATG 5 cut(s) 71, 113, 137, 160, 467
CviQI GTAC 1 cut(s) 824
DdeI CTNAG 3 cut(s) 653, 756, 812
DinI GGCGCC 1 cut(s) 564
DpnI GATC 4 cut(s) 63, 164, 626, 717
DpnII GATC 4 cut(s) 61, 162, 624, 715
EaeI YGGCCR 1 cut(s) 738
Eam1104I CTCTTC 2 cut(s) 489, 704
EarI CTCTTC 2 cut(s) 489, 704
Eco130I CCWWGG 3 cut(s) 136, 282, 466
Eco147I AGGCCT 1 cut(s) 287
Eco47III AGCGCT 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 387
EcoT14I CCWWGG 3 cut(s) 136, 282, 466
EgeI GGCGCC 1 cut(s) 564
EheI GGCGCC 1 cut(s) 564
ErhI CCWWGG 3 cut(s) 136, 282, 466
FaeI CATG 5 cut(s) 74, 116, 140, 163, 470
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FatI CATG 5 cut(s) 70, 112, 136, 159, 466
FauI CCCGC 2 cut(s) 640, 847
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 7 cut(s) 24, 522, 566, 613, 636, 872, 875
FokI GGATG 3 cut(s) 308, 347, 449
Fsp4HI GCNGC 7 cut(s) 24, 522, 566, 613, 636, 872, 875
FspBI CTAG 2 cut(s) 399, 587
GlaI GCGC 4 cut(s) 208, 564, 621, 651
GluI GCNGC 7 cut(s) 24, 522, 566, 613, 636, 872, 875
HaeII RGCGCY 3 cut(s) 210, 566, 653
HaeIII GGCC 3 cut(s) 287, 740, 754
HapII CCGG 5 cut(s) 428, 560, 601, 741, 750
HgaI GACGC 1 cut(s) 696
HhaI GCGC 4 cut(s) 209, 565, 622, 652
Hin1I GRCGYC 2 cut(s) 563, 688
Hin1II CATG 5 cut(s) 74, 116, 140, 163, 470
Hin6I GCGC 4 cut(s) 207, 563, 620, 650
HinP1I GCGC 4 cut(s) 207, 563, 620, 650
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 697
HinfI GANTC 2 cut(s) 18, 808
HpaII CCGG 5 cut(s) 428, 560, 601, 741, 750
HphI GGTGA 3 cut(s) 56, 125, 743
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 4 cut(s) 170, 363, 645, 805
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 3 cut(s) 80, 646, 669
HpyAV CCTTC 3 cut(s) 101, 671, 877
HpyCH4III ACNGT 2 cut(s) 346, 642
HpyCH4IV ACGT 2 cut(s) 667, 735
HpyCH4V TGCA 5 cut(s) 52, 116, 275, 524, 784
HpyF10VI GCNNNNNNNGC 8 cut(s) 424, 468, 628, 687, 696, 746, 776, 785
HpyF3I CTNAG 3 cut(s) 653, 756, 812
HpySE526I ACGT 2 cut(s) 667, 735
Hsp92I GRCGYC 2 cut(s) 563, 688
Hsp92II CATG 5 cut(s) 74, 116, 140, 163, 470
HspAI GCGC 4 cut(s) 207, 563, 620, 650
KasI GGCGCC 1 cut(s) 562
KroI GCCGGC 1 cut(s) 740
KroNI GCCGGC 1 cut(s) 742
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 4 cut(s) 61, 162, 624, 715
LmnI GCTCC 3 cut(s) 251, 391, 765
LpnPI CCDG 9 cut(s) 95, 297, 374, 401, 441, 573, 614, 754, 763
Lsp1109I GCAGC 2 cut(s) 508, 861
LweI GCATC 3 cut(s) 268, 471, 888
MaeI CTAG 2 cut(s) 399, 587
MaeII ACGT 2 cut(s) 667, 735
MaeIII GTNAC 5 cut(s) 170, 376, 656, 731, 773
MalI GATC 4 cut(s) 63, 164, 626, 717
MboI GATC 4 cut(s) 61, 162, 624, 715
MboII GAAGA 7 cut(s) 89, 174, 476, 497, 718, 721, 913
MhlI GDGCHC 2 cut(s) 437, 633
MluCI AATT 4 cut(s) 33, 196, 553, 916
Mly113I GGCGCC 1 cut(s) 563
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 9 cut(s) 141, 164, 359, 424, 507, 579, 734, 760, 809
MroNI GCCGGC 1 cut(s) 740
MseI TTAA 3 cut(s) 270, 291, 934
MslI CAYNNNNRTG 3 cut(s) 69, 138, 141
MspA1I CMGCKG 1 cut(s) 874
MspI CCGG 5 cut(s) 428, 560, 601, 741, 750
MspR9I CCNGG 3 cut(s) 389, 560, 751
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 1 cut(s) 389
MwoI GCNNNNNNNGC 8 cut(s) 424, 468, 628, 687, 696, 746, 776, 785
NaeI GCCGGC 1 cut(s) 742
NarI GGCGCC 1 cut(s) 563
NciI CCSGG 2 cut(s) 560, 751
NcoI CCATGG 2 cut(s) 136, 466
NdeII GATC 4 cut(s) 61, 162, 624, 715
NgoMIV GCCGGC 1 cut(s) 740
NlaIII CATG 5 cut(s) 74, 116, 140, 163, 470
NlaIV GGNNCC 4 cut(s) 253, 393, 564, 578
NmuCI GTSAC 3 cut(s) 170, 376, 731
OliI CACNNNNGTG 1 cut(s) 138
PceI AGGCCT 1 cut(s) 287
PcsI WCGNNNNNNNCGW 2 cut(s) 732, 741
PctI GAATGC 1 cut(s) 356
PdiI GCCGGC 1 cut(s) 742
PfeI GAWTC 2 cut(s) 18, 808
PflMI CCANNNNNTGG 1 cut(s) 458
PinAI ACCGGT 1 cut(s) 600
PkrI GCNGC 7 cut(s) 25, 523, 567, 614, 637, 873, 876
Ple19I CGATCG 1 cut(s) 627
PluTI GGCGCC 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 387
PspGI CCWGG 1 cut(s) 387
PspN4I GGNNCC 4 cut(s) 253, 393, 564, 578
PspPI GGNCC 1 cut(s) 752
PvuI CGATCG 1 cut(s) 627
RsaI GTAC 1 cut(s) 825
RsaNI GTAC 1 cut(s) 824
RseI CAYNNNNRTG 3 cut(s) 69, 138, 141
SaqAI TTAA 3 cut(s) 270, 291, 934
SatI GCNGC 7 cut(s) 24, 522, 566, 613, 636, 872, 875
Sau3AI GATC 4 cut(s) 61, 162, 624, 715
Sau96I GGNCC 1 cut(s) 752
ScrFI CCNGG 3 cut(s) 389, 560, 751
SduI GDGCHC 2 cut(s) 437, 633
SfaNI GCATC 3 cut(s) 268, 471, 888
SfoI GGCGCC 1 cut(s) 564
SmiMI CAYNNNNRTG 3 cut(s) 69, 138, 141
SmlI CTYRAG 2 cut(s) 227, 878
SmoI CTYRAG 2 cut(s) 227, 878
Sse9I AATT 4 cut(s) 33, 196, 553, 916
SseBI AGGCCT 1 cut(s) 287
SsiI CCGC 9 cut(s) 24, 475, 566, 596, 613, 633, 636, 840, 872
SspDI GGCGCC 1 cut(s) 562
SspMI CTAG 2 cut(s) 399, 587
StuI AGGCCT 1 cut(s) 287
StyD4I CCNGG 3 cut(s) 387, 558, 749
StyI CCWWGG 3 cut(s) 136, 282, 466
TaaI ACNGT 2 cut(s) 346, 642
TaiI ACGT 2 cut(s) 670, 738
TaqI TCGA 5 cut(s) 608, 644, 664, 797, 850
TasI AATT 4 cut(s) 33, 196, 553, 916
TatI WGTACW 1 cut(s) 823
TauI GCSGC 5 cut(s) 26, 568, 615, 638, 874
TfiI GAWTC 2 cut(s) 18, 808
Tru1I TTAA 3 cut(s) 270, 291, 934
Tru9I TTAA 3 cut(s) 270, 291, 934
TseFI GTSAC 3 cut(s) 170, 376, 731
TseI GCWGC 2 cut(s) 521, 874
Tsp45I GTSAC 3 cut(s) 170, 376, 731
TspGWI ACGGA 1 cut(s) 561
Van91I CCANNNNNTGG 1 cut(s) 458
XspI CTAG 2 cut(s) 399, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.