Rmu_sc0002897.1_g000003

protein At5g03900, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002897.1
Physical Location & Seq
Forward (+)
11274 .. 14244
2971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002897.1_g000003.1.cds

Sequence Viewer

Length: 1143 bp
ctggagaaagcctatattgaaaccctctcttttccaattcttcgagtcctctttctcttacataatccaaggcggcatttctctatatatgagcagaagaacaagaaactcgagatccttcgaccccatgaacatgtcaagaagatcgagtcggtgacaggccctcgcctcatatccaaatcctcactctttccctaccacctccacacctttcctctatcccaaacccccattttccctgggttctcttccaaggttcaagattctagggtttcggtgaaggtcgttctagcaagcctctacgcagtcaccgggattaggcctggaggagctgtcgagagcgataagctgccgtccgatgtgaggaagcgcaccatggacgctgtcgatgcatgcggcgggagagtgacgattggtgacgtctccagcagagctgggctcaagctcaataaggctcagaacgctttgcaggctctcgctgccgacactgagggctccttagagcttcttgccaagtcgtttcgattgaggattgagcctttgctggagaaggcaaaggtcgggatagagtatgtagcgagggtttcatttggaactgccctcattgcctccattgttcttatttatgctgcaatcattgttgccctttcttctagtaggaggaagattgattataatgctttggttacagcgaggatgacaatcgtggacgacgtggaagatcagttcactttttacatgagttccggtcatgttgttcatgaagaagacgatgaccaaggcgaggtttacattgatgaagctgacatccttaatgaagtcgatttcaatgaggaagatgagcctgatgattccatgcatacattaactggtcatacgatcctacacctccaggacctcctcccctcctcctcatctttcgtctccgtccagttcccaatgcccaacttaaccaccaactccgactacgagatctccattcgtaaccgccttgttaagcaggtcgccttggcctatctccagcctgtgtcctccacttgcgtcccacacttgctccgccgcctcaagctcaagtgcacccctgcctctccttcatcacccactgcctcctcccctttctctcccatacttcgttgtctttag

Protein Analysis

380

Amino Acids

42.14

Weight (kDa)

6.68

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000516)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03900 AT5G03900
fragaria_vesca FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis pycom12g02390 pycom14g02210
rosa_chinensis RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
AatII GACGTC 1 cut(s) 423
Acc36I ACCTGC 1 cut(s) 991
AciI CCGC 6 cut(s) 73, 396, 399, 988, 1057, 1060
AclWI GGATC 2 cut(s) 109, 874
AcyI GRCGYC 1 cut(s) 420
AfiI CCNNNNNNNGG 3 cut(s) 318, 363, 784
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 3 cut(s) 20, 260, 829
AjiI CACGTC 1 cut(s) 715
AjnI CCWGG 3 cut(s) 238, 322, 891
AloI GAACNNNNNNTCC 2 cut(s) 710, 742
AluBI AGCT 7 cut(s) 332, 349, 434, 445, 505, 803, 1069
AluI AGCT 7 cut(s) 332, 349, 434, 445, 505, 803, 1069
Alw21I GWGCWC 1 cut(s) 1079
Alw26I GTCTC 2 cut(s) 427, 928
Alw44I GTGCAC 1 cut(s) 1075
AlwI GGATC 2 cut(s) 109, 874
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 3 cut(s) 160, 320, 1011
ApaLI GTGCAC 1 cut(s) 1075
ApeKI GCWGC 3 cut(s) 349, 479, 629
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 161, 895
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 5 cut(s) 166, 289, 301, 428, 1089
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 895
BaeGI GKGCMC 1 cut(s) 1079
BanII GRGCYC 2 cut(s) 441, 497
BbsI GAAGAC 1 cut(s) 774
Bbv12I GWGCWC 1 cut(s) 1079
BbvI GCAGC 3 cut(s) 336, 466, 616
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 3 cut(s) 240, 324, 893
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 427, 928
BfaI CTAG 3 cut(s) 267, 290, 654
BfuAI ACCTGC 1 cut(s) 991
BglII AGATCT 1 cut(s) 972
BisI GCNGC 6 cut(s) 74, 350, 397, 480, 630, 1060
BlsI GCNGC 6 cut(s) 75, 351, 398, 481, 631, 1061
Bme1390I CCNGG 4 cut(s) 240, 313, 324, 893
Bme18I GGWCC 1 cut(s) 895
BmeT110I CYCGRG 1 cut(s) 110
BmgBI CACGTC 1 cut(s) 715
BmgT120I GGNCC 2 cut(s) 161, 895
BmiI GGNNCC 1 cut(s) 496
BmrFI CCNGG 4 cut(s) 240, 313, 324, 893
BmsI GCATC 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 774
BplI GAGNNNNNCTC 2 cut(s) 423, 455
BpmI CTGGAG 6 cut(s) 23, 345, 409, 566, 875, 1004
BpuEI CTTGAG 3 cut(s) 425, 1049, 1055
BpuMI CCSGG 1 cut(s) 313
BsaBI GATNNNNATC 1 cut(s) 701
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 7 cut(s) 68, 238, 239, 252, 375, 778, 1008
BsaWI WCCGGW 1 cut(s) 746
BsaXI ACNNNNNCTCC 6 cut(s) 318, 348, 959, 989, 1038, 1068
Bsc4I CCNNNNNNNGG 3 cut(s) 318, 363, 784
Bse1I ACTGG 2 cut(s) 874, 931
Bse3DI GCAATG 1 cut(s) 603
Bse8I GATNNNNATC 1 cut(s) 701
BseBI CCWGG 3 cut(s) 240, 324, 893
BseDI CCNNGG 7 cut(s) 68, 238, 239, 252, 375, 778, 1008
BseGI GGATG 2 cut(s) 702, 807
BseJI GATNNNNATC 1 cut(s) 701
BseLI CCNNNNNNNGG 3 cut(s) 318, 363, 784
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 2 cut(s) 470, 480
BseNI ACTGG 2 cut(s) 874, 931
BseRI GAGGAG 5 cut(s) 342, 890, 898, 901, 1099
BseSI GKGCMC 1 cut(s) 1079
BseXI GCAGC 3 cut(s) 336, 466, 616
BseYI CCCAGC 1 cut(s) 434
BshFI GGCC 3 cut(s) 162, 322, 1013
BsiHKAI GWGCWC 1 cut(s) 1079
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 2 cut(s) 312, 747
BslFI GGGAC 1 cut(s) 1028
BslI CCNNNNNNNGG 3 cut(s) 318, 363, 784
BsmAI GTCTC 2 cut(s) 427, 928
BsmBI CGTCTC 2 cut(s) 427, 928
BsmFI GGGAC 1 cut(s) 1028
BsnI GGCC 3 cut(s) 162, 322, 1013
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 3 cut(s) 441, 497, 1079
Bsp143I GATC 5 cut(s) 114, 144, 721, 879, 972
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 6 cut(s) 73, 396, 399, 988, 1057, 1060
BspANI GGCC 3 cut(s) 162, 322, 1013
BspCNI CTCAG 2 cut(s) 469, 481
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 1 cut(s) 496
BspMI ACCTGC 1 cut(s) 991
BspPI GGATC 2 cut(s) 109, 874
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 2 cut(s) 874, 931
BssECI CCNNGG 7 cut(s) 68, 238, 239, 252, 375, 778, 1008
BssMI GATC 5 cut(s) 114, 144, 721, 879, 972
BssNI GRCGYC 1 cut(s) 420
BssT1I CCWWGG 5 cut(s) 68, 252, 375, 778, 1008
Bst2UI CCWGG 3 cut(s) 240, 324, 893
Bst6I CTCTTC 1 cut(s) 253
BstACI GRCGYC 1 cut(s) 420
BstC8I GCNNGC 3 cut(s) 295, 394, 471
BstDEI CTNAG 3 cut(s) 456, 489, 499
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 702, 807
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 5 cut(s) 117, 147, 724, 882, 975
BstMAI GTCTC 2 cut(s) 427, 928
BstMBI GATC 5 cut(s) 114, 144, 721, 879, 972
BstMWI GCNNNNNNNGC 5 cut(s) 389, 461, 470, 479, 605
BstNI CCWGG 3 cut(s) 240, 324, 893
BstNSI RCATGY 2 cut(s) 137, 396
BstSCI CCNGG 4 cut(s) 238, 311, 322, 891
BstSLI GKGCMC 1 cut(s) 1079
BstV1I GCAGC 3 cut(s) 336, 466, 616
BstV2I GAAGAC 1 cut(s) 774
BstX2I RGATCY 2 cut(s) 114, 972
BstYI RGATCY 2 cut(s) 114, 972
BsuRI GGCC 3 cut(s) 162, 322, 1013
BtgI CCRYGG 1 cut(s) 375
BtrI CACGTC 1 cut(s) 715
BtsCI GGATG 2 cut(s) 702, 807
BtsI GCAGTG 1 cut(s) 1101
BtsIMutI CAGTG 2 cut(s) 486, 1101
BveI ACCTGC 1 cut(s) 991
Cac8I GCNNGC 3 cut(s) 295, 394, 471
CciI TCATGA 1 cut(s) 760
CfoI GCGC 1 cut(s) 372
Cfr13I GGNCC 2 cut(s) 161, 895
CseI GACGC 2 cut(s) 389, 1030
CviAII CATG 8 cut(s) 128, 134, 376, 393, 739, 752, 761, 856
DdeI CTNAG 3 cut(s) 456, 489, 499
DpnI GATC 5 cut(s) 116, 146, 723, 881, 974
DpnII GATC 5 cut(s) 114, 144, 721, 879, 972
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
EciI GGCGGA 1 cut(s) 1046
Eco130I CCWWGG 5 cut(s) 68, 252, 375, 778, 1008
Eco147I AGGCCT 1 cut(s) 322
Eco24I GRGCYC 2 cut(s) 441, 497
Eco47I GGWCC 1 cut(s) 895
Eco88I CYCGRG 1 cut(s) 110
EcoO109I RGGNCCY 2 cut(s) 161, 895
EcoRII CCWGG 3 cut(s) 238, 322, 891
EcoT14I CCWWGG 5 cut(s) 68, 252, 375, 778, 1008
EcoT22I ATGCAT 2 cut(s) 394, 861
EcoT38I GRGCYC 2 cut(s) 441, 497
ErhI CCWWGG 5 cut(s) 68, 252, 375, 778, 1008
Esp3I CGTCTC 2 cut(s) 427, 928
FaeI CATG 8 cut(s) 131, 137, 379, 396, 742, 755, 764, 859
FaqI GGGAC 1 cut(s) 1028
FatI CATG 8 cut(s) 127, 133, 375, 392, 738, 751, 760, 855
FauI CCCGC 1 cut(s) 392
Fnu4HI GCNGC 6 cut(s) 74, 350, 397, 480, 630, 1060
FokI GGATG 2 cut(s) 709, 794
FriOI GRGCYC 2 cut(s) 441, 497
Fsp4HI GCNGC 6 cut(s) 74, 350, 397, 480, 630, 1060
FspBI CTAG 3 cut(s) 267, 290, 654
GlaI GCGC 1 cut(s) 371
GluI GCNGC 6 cut(s) 74, 350, 397, 480, 630, 1060
GsaI CCCAGC 1 cut(s) 438
GsuI CTGGAG 6 cut(s) 23, 345, 409, 566, 875, 1004
HaeIII GGCC 3 cut(s) 162, 322, 1013
HapII CCGG 2 cut(s) 312, 747
HgaI GACGC 2 cut(s) 389, 1030
HhaI GCGC 1 cut(s) 372
Hin1I GRCGYC 1 cut(s) 420
Hin1II CATG 8 cut(s) 131, 137, 379, 396, 742, 755, 764, 859
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HinfI GANTC 4 cut(s) 45, 149, 263, 851
HpaII CCGG 2 cut(s) 312, 747
HphI GGTGA 5 cut(s) 166, 289, 301, 428, 1089
Hpy166II GTNNAC 4 cut(s) 709, 729, 790, 1077
Hpy188I TCNGA 3 cut(s) 358, 459, 964
Hpy188III TCNNGA 6 cut(s) 112, 139, 260, 337, 562, 761
Hpy8I GTNNAC 4 cut(s) 709, 729, 790, 1077
Hpy99I CGWCG 1 cut(s) 716
HpyAV CCTTC 4 cut(s) 128, 274, 544, 1101
HpyCH4IV ACGT 2 cut(s) 420, 714
HpyCH4V TGCA 5 cut(s) 392, 469, 632, 859, 1077
HpyF10VI GCNNNNNNNGC 5 cut(s) 389, 461, 470, 479, 605
HpyF3I CTNAG 3 cut(s) 456, 489, 499
HpySE526I ACGT 2 cut(s) 420, 714
Hsp92I GRCGYC 1 cut(s) 420
Hsp92II CATG 8 cut(s) 131, 137, 379, 396, 742, 755, 764, 859
HspAI GCGC 1 cut(s) 370
Kzo9I GATC 5 cut(s) 114, 144, 721, 879, 972
LmnI GCTCC 3 cut(s) 329, 500, 1059
Lsp1109I GCAGC 3 cut(s) 336, 466, 616
LweI GCATC 1 cut(s) 379
MaeI CTAG 3 cut(s) 267, 290, 654
MaeII ACGT 2 cut(s) 420, 714
MaeIII GTNAC 6 cut(s) 154, 307, 406, 416, 685, 983
MalI GATC 5 cut(s) 116, 146, 723, 881, 974
MboI GATC 5 cut(s) 114, 144, 721, 879, 972
MflI RGATCY 2 cut(s) 114, 972
MhlI GDGCHC 3 cut(s) 441, 497, 1079
MluCI AATT 1 cut(s) 36
MlyI GAGTC 2 cut(s) 54, 158
MmeI TCCRAC 1 cut(s) 987
Mph1103I ATGCAT 2 cut(s) 394, 861
MseI TTAA 4 cut(s) 813, 866, 950, 996
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 2 cut(s) 312, 747
MspR9I CCNGG 4 cut(s) 240, 313, 324, 893
MvaI CCWGG 3 cut(s) 240, 324, 893
MwoI GCNNNNNNNGC 5 cut(s) 389, 461, 470, 479, 605
NciI CCSGG 1 cut(s) 313
NcoI CCATGG 1 cut(s) 375
NdeII GATC 5 cut(s) 114, 144, 721, 879, 972
NlaIII CATG 8 cut(s) 131, 137, 379, 396, 742, 755, 764, 859
NlaIV GGNNCC 1 cut(s) 496
NmuCI GTSAC 4 cut(s) 154, 307, 406, 416
NsiI ATGCAT 2 cut(s) 394, 861
NspI RCATGY 2 cut(s) 137, 396
PaeI GCATGC 1 cut(s) 396
PaeR7I CTCGAG 1 cut(s) 110
PagI TCATGA 1 cut(s) 760
PasI CCCWGGG 1 cut(s) 239
PceI AGGCCT 1 cut(s) 322
PciI ACATGT 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 711
PfeI GAWTC 2 cut(s) 263, 851
PflFI GACNNNGTC 1 cut(s) 383
PfoI TCCNGGA 1 cut(s) 891
PkrI GCNGC 6 cut(s) 75, 351, 398, 481, 631, 1061
PleI GAGTC 2 cut(s) 53, 157
PpsI GAGTC 2 cut(s) 53, 157
PpuMI RGGWCCY 1 cut(s) 895
PscI ACATGT 1 cut(s) 133
PsiI TTATAA 1 cut(s) 675
Psp5II RGGWCCY 1 cut(s) 895
Psp6I CCWGG 3 cut(s) 238, 322, 891
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 3 cut(s) 238, 322, 891
PspN4I GGNNCC 1 cut(s) 496
PspPI GGNCC 2 cut(s) 161, 895
PspPPI RGGWCCY 1 cut(s) 895
PsuI RGATCY 2 cut(s) 114, 972
PsyI GACNNNGTC 1 cut(s) 383
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 4 cut(s) 813, 866, 950, 996
SatI GCNGC 6 cut(s) 74, 350, 397, 480, 630, 1060
Sau3AI GATC 5 cut(s) 114, 144, 721, 879, 972
Sau96I GGNCC 2 cut(s) 161, 895
SchI GAGTC 2 cut(s) 54, 158
ScrFI CCNGG 4 cut(s) 240, 313, 324, 893
SduI GDGCHC 3 cut(s) 441, 497, 1079
SfaNI GCATC 1 cut(s) 379
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 1 cut(s) 895
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 4 cut(s) 110, 440, 1064, 1070
SmoI CTYRAG 4 cut(s) 110, 440, 1064, 1070
SphI GCATGC 1 cut(s) 396
Sse9I AATT 1 cut(s) 36
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 6 cut(s) 73, 396, 399, 988, 1057, 1060
SspMI CTAG 3 cut(s) 267, 290, 654
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 4 cut(s) 238, 311, 322, 891
StyI CCWWGG 5 cut(s) 68, 252, 375, 778, 1008
TaiI ACGT 2 cut(s) 423, 717
TaqI TCGA 8 cut(s) 43, 111, 121, 147, 336, 387, 523, 822
TasI AATT 1 cut(s) 36
TauI GCSGC 3 cut(s) 76, 399, 1062
TfiI GAWTC 2 cut(s) 263, 851
Tru1I TTAA 4 cut(s) 813, 866, 950, 996
Tru9I TTAA 4 cut(s) 813, 866, 950, 996
TscAI CASTG 2 cut(s) 493, 1108
TseFI GTSAC 4 cut(s) 154, 307, 406, 416
TseI GCWGC 3 cut(s) 349, 479, 629
Tsp45I GTSAC 4 cut(s) 154, 307, 406, 416
TspDTI ATGAA 7 cut(s) 144, 576, 749, 777, 813, 831, 1083
TspGWI ACGGA 1 cut(s) 916
TspRI CASTG 2 cut(s) 493, 1108
Tth111I GACNNNGTC 1 cut(s) 383
VneI GTGCAC 1 cut(s) 1075
VpaK11BI GGWCC 1 cut(s) 895
XceI RCATGY 2 cut(s) 137, 396
XhoI CTCGAG 1 cut(s) 110
XspI CTAG 3 cut(s) 267, 290, 654
ZraI GACGTC 1 cut(s) 421
Zsp2I ATGCAT 2 cut(s) 394, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.