Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006074.1

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

37729 .. 39378

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006074.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggcagattttggtctgcttattctcttcttgattgctttgggggacgctgaggttgtgttgagttcggggtttagaggcgttgttgtttttgcgtccaagttcaatggtaaagtaaaagatgcggcctcattggtggggatggcatcttgctggcagattagcagcgatccagtcttggtttggtcaagatacactactacaaaaattgaatcagacgacgcctctcacacgacgtatcatacttttccgccctcgcctcatatccaaatcctcactctttcggtctttcccgactgcctccacacctttcctctctcccaaacccccattttccctgggttctcttccaaggttcgagattctagggtttcggtgacggtcgttccagccagcctctacgcagtcaccgggattaggcctggcggagctatcgagagcgataagctaccgtccgatgtgaggaagcgcaccatggacgttgtcgacgcctgcggagggagagtgacgattggtgacgtctccagcagagctgggctcaagctcaatgaggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

19.78

Weight (kDa)

6.89

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	522
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	4 cut(s)	125, 251, 426, 495
AclWI	GGATC	1 cut(s)	164
AcyI	GRCGYC	3 cut(s)	222, 489, 519
AfiI	CCNNNNNNNGG	3 cut(s)	417, 462, 498
AgsI	TTSAA	2 cut(s)	106, 212
AjnI	CCWGG	2 cut(s)	337, 421
AluBI	AGCT	4 cut(s)	431, 448, 533, 544
AluI	AGCT	4 cut(s)	431, 448, 533, 544
Alw26I	GTCTC	1 cut(s)	526
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	2 cut(s)	126, 419
ApeKI	GCWGC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	471
AsuC2I	CCSGG	1 cut(s)	412
AsuHPI	GGTGA	3 cut(s)	388, 400, 527
BanII	GRGCYC	1 cut(s)	540
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	1 cut(s)	136
BciT130I	CCWGG	2 cut(s)	339, 423
BcnI	CCSGG	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	526
BfaI	CTAG	1 cut(s)	366
BisI	GCNGC	2 cut(s)	126, 166
BlsI	GCNGC	2 cut(s)	127, 167
Bme1390I	CCNGG	3 cut(s)	339, 412, 423
BmrFI	CCNGG	3 cut(s)	339, 412, 423
BmsI	GCATC	2 cut(s)	112, 155
BplI	GAGNNNNNCTC	2 cut(s)	522, 554
BpmI	CTGGAG	1 cut(s)	508
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	412
BsaHI	GRCGYC	3 cut(s)	222, 489, 519
BsaJI	CCNNGG	4 cut(s)	337, 338, 351, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	489, 519
Bsc4I	CCNNNNNNNGG	3 cut(s)	417, 462, 498
Bse1I	ACTGG	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	339, 423
BseDI	CCNNGG	4 cut(s)	337, 338, 351, 474
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	3 cut(s)	417, 462, 498
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	177
BseYI	CCCAGC	1 cut(s)	533
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	128, 421
BsiEI	CGRYCG	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	411
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	417, 462, 498
BsmAI	GTCTC	1 cut(s)	526
BsmBI	CGTCTC	1 cut(s)	526
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	128, 421
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	4 cut(s)	125, 251, 426, 495
BspANI	GGCC	2 cut(s)	128, 421
BspCNI	CTCAG	1 cut(s)	43
BspPI	GGATC	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	4 cut(s)	337, 338, 351, 474
BssMI	GATC	1 cut(s)	169
BssNI	GRCGYC	3 cut(s)	222, 489, 519
BssT1I	CCWWGG	2 cut(s)	351, 474
Bst2UI	CCWGG	2 cut(s)	339, 423
Bst4CI	ACNGT	2 cut(s)	382, 453
Bst6I	CTCTTC	2 cut(s)	32, 352
BstACI	GRCGYC	3 cut(s)	222, 489, 519
BstC8I	GCNNGC	3 cut(s)	155, 394, 493
BstDEI	CTNAG	2 cut(s)	51, 555
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	526
BstMBI	GATC	1 cut(s)	169
BstMCI	CGRYCG	1 cut(s)	384
BstNI	CCWGG	2 cut(s)	339, 423
BstSCI	CCNGG	3 cut(s)	337, 410, 421
BstV1I	GCAGC	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	128, 421
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	155, 394, 493
CfoI	GCGC	1 cut(s)	471
CseI	GACGC	4 cut(s)	56, 84, 230, 497
CviAII	CATG	1 cut(s)	475
DdeI	CTNAG	2 cut(s)	51, 555
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	2 cut(s)	32, 352
EarI	CTCTTC	2 cut(s)	32, 352
EciI	GGCGGA	2 cut(s)	240, 441
Eco130I	CCWWGG	2 cut(s)	351, 474
Eco147I	AGGCCT	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	540
EcoRII	CCWGG	2 cut(s)	337, 421
EcoT14I	CCWWGG	2 cut(s)	351, 474
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	2 cut(s)	351, 474
Esp3I	CGTCTC	1 cut(s)	526
FaeI	CATG	1 cut(s)	478
FaiI	YATR	3 cut(s)	243, 264, 476
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	474
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	2 cut(s)	126, 166
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	2 cut(s)	126, 166
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	2 cut(s)	126, 166
GsaI	CCCAGC	1 cut(s)	537
GsuI	CTGGAG	1 cut(s)	508
HaeIII	GGCC	2 cut(s)	128, 421
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	4 cut(s)	56, 84, 230, 497
HhaI	GCGC	1 cut(s)	471
Hin1I	GRCGYC	3 cut(s)	222, 489, 519
Hin1II	CATG	1 cut(s)	478
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	2 cut(s)	212, 362
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	3 cut(s)	388, 400, 527
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	2 cut(s)	217, 457
Hpy188III	TCNNGA	5 cut(s)	31, 189, 293, 359, 436
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	3 cut(s)	224, 238, 491
HpyCH4III	ACNGT	2 cut(s)	382, 453
HpyCH4IV	ACGT	3 cut(s)	236, 480, 519
HpyF3I	CTNAG	2 cut(s)	51, 555
HpySE526I	ACGT	3 cut(s)	236, 480, 519
Hsp92I	GRCGYC	3 cut(s)	222, 489, 519
Hsp92II	CATG	1 cut(s)	478
HspAI	GCGC	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	2 cut(s)	112, 155
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	3 cut(s)	236, 480, 519
MaeIII	GTNAC	4 cut(s)	376, 406, 505, 515
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	19, 339
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	1 cut(s)	207
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	3 cut(s)	339, 412, 423
MvaI	CCWGG	2 cut(s)	339, 423
NciI	CCSGG	1 cut(s)	412
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	478
NmuCI	GTSAC	4 cut(s)	376, 406, 505, 515
PasI	CCCWGGG	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	212, 362
PflFI	GACNNNGTC	1 cut(s)	482
PkrI	GCNGC	2 cut(s)	127, 167
Psp6I	CCWGG	2 cut(s)	337, 421
PspFI	CCCAGC	1 cut(s)	533
PspGI	CCWGG	2 cut(s)	337, 421
PsyI	GACNNNGTC	1 cut(s)	482
SalI	GTCGAC	1 cut(s)	485
SatI	GCNGC	2 cut(s)	126, 166
Sau3AI	GATC	1 cut(s)	169
ScrFI	CCNGG	3 cut(s)	339, 412, 423
SduI	GDGCHC	1 cut(s)	540
SfaNI	GCATC	2 cut(s)	112, 155
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	1 cut(s)	207
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	4 cut(s)	125, 251, 426, 495
SspMI	CTAG	1 cut(s)	366
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	3 cut(s)	337, 410, 421
StyI	CCWWGG	2 cut(s)	351, 474
TaaI	ACNGT	2 cut(s)	382, 453
TaiI	ACGT	3 cut(s)	239, 483, 522
TaqI	TCGA	3 cut(s)	358, 435, 486
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	1 cut(s)	207
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	2 cut(s)	212, 362
TseFI	GTSAC	4 cut(s)	376, 406, 505, 515
TseI	GCWGC	1 cut(s)	165
Tsp45I	GTSAC	4 cut(s)	376, 406, 505, 515
Tth111I	GACNNNGTC	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	1 cut(s)	366
ZraI	GACGTC	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.