Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

60312507 .. 60322267

Gene Structure 9761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGCCATTCCATGGAACGAGTGTAGAGAAAAATGTGAATGTTATGTTGGCTAAAACAAAGCATGGGAATCACTTGGCTTACTTTGAAGGGATCACTGCTTCTGGGATTTGGAGGGTGAGAACTGTGGATGAGTTCTTTAGTGTTCTGAATTGTAGTGAGTTTATGCATGTACAGAAGATGAAGGATTTGGGGGTTCGAGATTCTAGGGTTTCGGTGACAGTCGTTCGAGCCAGCCTCGACGCAGTCACCGGGATTAGGCCTAGCGGAGCTATCGAGAGCGATAAGCTACCATCCGATGTGAGGAAGCGCACCATGGACGTTGTCGACGCCTGTGGAGGGAGAGTGACGATTGGTGACGTCTCCAGCAGAGCGGGGCTCAAACTCAATGAGGCTCAGAACGCTTTGCAGGCTCTTGCTGTCAACACTGAGGGCTTGGAGGTCTCGGATGAAGGCTATGTGCTTTATGTTTTCCCCAAAGATTATCGAGCAAAGCCTCTTGCCAAATCGTTTCGATTGAGAATTGAGCCTCTGCTGGAGAAAGCAAAGGCTGGGACCAAGTATGTAGTGAAGGTTTCATTTGGAACTGCCCTCATTGCCTCCATTGTTCTTGTTTATACTACAATCATTGTTGCCCTTTCTTCCAGTAGGAGCGAGGATGACAATCGTGGACGACGTGGAAGCTCATATGATTCGGGGTTCACTTTTTACATGAGTCCCTTTATGGGTGACTATGATTATGTATTTTCTGAGAATGGTCTTGTGGCTCACAAAGATGTGAAGCTCATTTGCACCCAGGATCCACAACAGTGTTGTCATGTTGTTCATGAAGAAGACGATGACCAAGGTGAGGTTTACATTGATGAAGCTGACATCCTTAACGAAGTTGATTTCGATGAGGAAGATCTTCCTGATGCAGACGACCAAGCAGTTGGTACATCATCGTTTGGCATACAATTCCTTATTTATGATCTTTTTCTTTCGCTTGCTCTCGAGTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

36.79

Weight (kDa)

4.83

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	360
AccB7I	CCANNNNNTGG	1 cut(s)	11
AccBSI	CCGCTC	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	2 cut(s)	264, 371
AclWI	GGATC	3 cut(s)	98, 791, 804
AcyI	GRCGYC	2 cut(s)	327, 357
AfaI	GTAC	2 cut(s)	171, 934
AfiI	CCNNNNNNNGG	6 cut(s)	11, 255, 300, 336, 722, 847
AgsI	TTSAA	1 cut(s)	86
AjiI	CACGTC	1 cut(s)	674
AjnI	CCWGG	1 cut(s)	792
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AleI	CACNNNNGTG	1 cut(s)	805
AluBI	AGCT	5 cut(s)	269, 286, 681, 781, 866
AluI	AGCT	5 cut(s)	269, 286, 681, 781, 866
Alw26I	GTCTC	2 cut(s)	364, 445
AlwI	GGATC	3 cut(s)	98, 791, 804
Ama87I	CYCGRG	1 cut(s)	989
AoxI	GGCC	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	903
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	552
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	6 cut(s)	127, 226, 238, 365, 737, 857
AvaI	CYCGRG	1 cut(s)	989
AvaII	GGWCC	1 cut(s)	552
BamHI	GGATCC	1 cut(s)	796
BanII	GRGCYC	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	837
BccI	CCATC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	794
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	364, 445
BfaI	CTAG	2 cut(s)	204, 261
BglII	AGATCT	1 cut(s)	901
Bme1390I	CCNGG	2 cut(s)	250, 794
Bme18I	GGWCC	1 cut(s)	552
BmeT110I	CYCGRG	1 cut(s)	989
BmgBI	CACGTC	1 cut(s)	674
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	2 cut(s)	553, 798
BmrFI	CCNGG	2 cut(s)	250, 794
BmsI	GCATC	1 cut(s)	901
BpiI	GAAGAC	1 cut(s)	837
BplI	GAGNNNNNCTC	4 cut(s)	219, 251, 360, 392
BpmI	CTGGAG	2 cut(s)	346, 554
BpuMI	CCSGG	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	660
BsaHI	GRCGYC	2 cut(s)	327, 357
BsaI	GGTCTC	1 cut(s)	445
BsaJI	CCNNGG	4 cut(s)	10, 312, 792, 841
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	6 cut(s)	11, 255, 300, 336, 722, 847
Bse1I	ACTGG	1 cut(s)	642
Bse3DI	GCAATG	1 cut(s)	591
Bse8I	GATNNNNATC	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	794
BseDI	CCNNGG	4 cut(s)	10, 312, 792, 841
BseGI	GGATG	5 cut(s)	133, 290, 451, 661, 870
BseJI	GATNNNNATC	1 cut(s)	660
BseLI	CCNNNNNNNGG	6 cut(s)	11, 255, 300, 336, 722, 847
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	3 cut(s)	407, 417, 738
BseNI	ACTGG	1 cut(s)	642
BseYI	CCCAGC	1 cut(s)	548
BshFI	GGCC	1 cut(s)	259
BsiHKCI	CYCGRG	1 cut(s)	989
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	2 cut(s)	565, 699
BslI	CCNNNNNNNGG	6 cut(s)	11, 255, 300, 336, 722, 847
BsmAI	GTCTC	2 cut(s)	364, 445
BsmBI	CGTCTC	1 cut(s)	364
BsmFI	GGGAC	2 cut(s)	565, 699
BsnI	GGCC	1 cut(s)	259
Bso31I	GGTCTC	1 cut(s)	445
BsoBI	CYCGRG	1 cut(s)	989
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	4 cut(s)	90, 796, 901, 967
Bsp19I	CCATGG	2 cut(s)	10, 312
BspACI	CCGC	2 cut(s)	264, 371
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	3 cut(s)	406, 418, 739
BspHI	TCATGA	1 cut(s)	823
BspLI	GGNNCC	2 cut(s)	553, 798
BspPI	GGATC	3 cut(s)	98, 791, 804
BspTNI	GGTCTC	1 cut(s)	445
BsrBI	CCGCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	591
BsrGI	TGTACA	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	4 cut(s)	10, 312, 792, 841
BssMI	GATC	4 cut(s)	90, 796, 901, 967
BssNI	GRCGYC	2 cut(s)	327, 357
BssT1I	CCWWGG	3 cut(s)	10, 312, 841
Bst2UI	CCWGG	1 cut(s)	794
Bst4CI	ACNGT	3 cut(s)	124, 220, 807
BstACI	GRCGYC	2 cut(s)	327, 357
BstAUI	TGTACA	1 cut(s)	169
BstC8I	GCNNGC	3 cut(s)	232, 408, 984
BstDEI	CTNAG	3 cut(s)	393, 426, 747
BstDSI	CCRYGG	2 cut(s)	10, 312
BstF5I	GGATG	5 cut(s)	133, 290, 451, 661, 870
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	4 cut(s)	93, 799, 904, 970
BstMAI	GTCTC	2 cut(s)	364, 445
BstMBI	GATC	4 cut(s)	90, 796, 901, 967
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 407, 593
BstNI	CCWGG	1 cut(s)	794
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	248, 792
BstV2I	GAAGAC	1 cut(s)	837
BstX2I	RGATCY	2 cut(s)	796, 901
BstXI	CCANNNNNNTGG	1 cut(s)	929
BstYI	RGATCY	2 cut(s)	796, 901
BsuRI	GGCC	1 cut(s)	259
BtgI	CCRYGG	2 cut(s)	10, 312
BtrI	CACGTC	1 cut(s)	674
BtsCI	GGATG	5 cut(s)	133, 290, 451, 661, 870
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	3 cut(s)	93, 423, 812
Cac8I	GCNNGC	3 cut(s)	232, 408, 984
CciI	TCATGA	1 cut(s)	823
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	552
CseI	GACGC	2 cut(s)	248, 335
Csp6I	GTAC	2 cut(s)	170, 933
CviAII	CATG	7 cut(s)	11, 62, 167, 313, 709, 815, 824
CviQI	GTAC	2 cut(s)	170, 933
DdeI	CTNAG	3 cut(s)	393, 426, 747
DpnI	GATC	4 cut(s)	92, 798, 903, 969
DpnII	GATC	4 cut(s)	90, 796, 901, 967
Eco130I	CCWWGG	3 cut(s)	10, 312, 841
Eco147I	AGGCCT	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	552
Eco88I	CYCGRG	1 cut(s)	989
EcoRII	CCWGG	1 cut(s)	792
EcoT14I	CCWWGG	3 cut(s)	10, 312, 841
EcoT22I	ATGCAT	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	3 cut(s)	10, 312, 841
Esp3I	CGTCTC	1 cut(s)	364
FaeI	CATG	7 cut(s)	14, 65, 170, 316, 712, 818, 827
FaqI	GGGAC	2 cut(s)	565, 699
FatI	CATG	7 cut(s)	10, 61, 166, 312, 708, 814, 823
FauI	CCCGC	1 cut(s)	364
FauNDI	CATATG	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	324
FokI	GGATG	5 cut(s)	140, 277, 458, 668, 857
FriOI	GRGCYC	1 cut(s)	378
FspBI	CTAG	2 cut(s)	204, 261
GlaI	GCGC	1 cut(s)	308
GsaI	CCCAGC	1 cut(s)	552
GsuI	CTGGAG	2 cut(s)	346, 554
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	2 cut(s)	248, 335
HhaI	GCGC	1 cut(s)	309
Hin1I	GRCGYC	2 cut(s)	327, 357
Hin1II	CATG	7 cut(s)	14, 65, 170, 316, 712, 818, 827
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	2 cut(s)	325, 421
HindII	GTYRAC	2 cut(s)	325, 421
HinfI	GANTC	5 cut(s)	67, 200, 689, 712, 992
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	6 cut(s)	127, 226, 238, 365, 737, 857
Hpy166II	GTNNAC	5 cut(s)	325, 421, 668, 699, 853
Hpy188I	TCNGA	5 cut(s)	147, 295, 396, 445, 748
Hpy188III	TCNNGA	5 cut(s)	197, 274, 824, 908, 989
Hpy8I	GTNNAC	5 cut(s)	325, 421, 668, 699, 853
Hpy99I	CGWCG	3 cut(s)	242, 329, 675
HpyAV	CCTTC	4 cut(s)	80, 175, 443, 562
HpyCH4III	ACNGT	3 cut(s)	124, 220, 807
HpyCH4IV	ACGT	3 cut(s)	318, 357, 673
HpyCH4V	TGCA	4 cut(s)	166, 406, 789, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 407, 593
HpyF3I	CTNAG	3 cut(s)	393, 426, 747
HpySE526I	ACGT	3 cut(s)	318, 357, 673
Hsp92I	GRCGYC	2 cut(s)	327, 357
Hsp92II	CATG	7 cut(s)	14, 65, 170, 316, 712, 818, 827
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	90, 796, 901, 967
LmnI	GCTCC	2 cut(s)	266, 648
LweI	GCATC	1 cut(s)	901
MaeI	CTAG	2 cut(s)	204, 261
MaeII	ACGT	3 cut(s)	318, 357, 673
MaeIII	GTNAC	5 cut(s)	214, 244, 343, 353, 725
MalI	GATC	4 cut(s)	92, 798, 903, 969
MbiI	CCGCTC	1 cut(s)	371
MboI	GATC	4 cut(s)	90, 796, 901, 967
MboII	GAAGA	6 cut(s)	187, 630, 839, 842, 896, 911
MflI	RGATCY	2 cut(s)	796, 901
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	4 cut(s)	148, 519, 953, 996
MlyI	GAGTC	2 cut(s)	721, 1001
Mph1103I	ATGCAT	1 cut(s)	168
MroXI	GAANNNNTTC	1 cut(s)	903
MseI	TTAA	1 cut(s)	876
MslI	CAYNNNNRTG	2 cut(s)	771, 805
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	2 cut(s)	250, 794
MvaI	CCWGG	1 cut(s)	794
MwoI	GCNNNNNNNGC	3 cut(s)	398, 407, 593
NciI	CCSGG	1 cut(s)	250
NcoI	CCATGG	2 cut(s)	10, 312
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	4 cut(s)	90, 796, 901, 967
NlaIII	CATG	7 cut(s)	14, 65, 170, 316, 712, 818, 827
NlaIV	GGNNCC	2 cut(s)	553, 798
NmuCI	GTSAC	5 cut(s)	214, 244, 343, 353, 725
NsiI	ATGCAT	1 cut(s)	168
NspI	RCATGY	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	805
PaeR7I	CTCGAG	1 cut(s)	989
PagI	TCATGA	1 cut(s)	823
PceI	AGGCCT	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	903
PfeI	GAWTC	3 cut(s)	67, 200, 689
PflFI	GACNNNGTC	2 cut(s)	242, 320
PflMI	CCANNNNNTGG	1 cut(s)	11
PleI	GAGTC	2 cut(s)	720, 1000
PpsI	GAGTC	2 cut(s)	720, 1000
Psp6I	CCWGG	1 cut(s)	792
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	792
PspN4I	GGNNCC	2 cut(s)	553, 798
PspPI	GGNCC	1 cut(s)	552
PsuI	RGATCY	2 cut(s)	796, 901
PsyI	GACNNNGTC	2 cut(s)	242, 320
RsaI	GTAC	2 cut(s)	171, 934
RsaNI	GTAC	2 cut(s)	170, 933
RseI	CAYNNNNRTG	2 cut(s)	771, 805
SalI	GTCGAC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	876
Sau3AI	GATC	4 cut(s)	90, 796, 901, 967
Sau96I	GGNCC	1 cut(s)	552
SchI	GAGTC	2 cut(s)	721, 1001
ScrFI	CCNGG	2 cut(s)	250, 794
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	1 cut(s)	901
Sfr274I	CTCGAG	1 cut(s)	989
SinI	GGWCC	1 cut(s)	552
SlaI	CTCGAG	1 cut(s)	989
SmiMI	CAYNNNNRTG	2 cut(s)	771, 805
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
Sse9I	AATT	4 cut(s)	148, 519, 953, 996
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	2 cut(s)	264, 371
SspMI	CTAG	2 cut(s)	204, 261
StuI	AGGCCT	1 cut(s)	259
StyD4I	CCNGG	2 cut(s)	248, 792
StyI	CCWWGG	3 cut(s)	10, 312, 841
TaaI	ACNGT	3 cut(s)	124, 220, 807
TaiI	ACGT	3 cut(s)	321, 360, 676
TaqI	TCGA	9 cut(s)	196, 226, 237, 273, 324, 484, 511, 891, 990
TasI	AATT	4 cut(s)	148, 519, 953, 996
TatI	WGTACW	1 cut(s)	169
TfiI	GAWTC	3 cut(s)	67, 200, 689
Tru1I	TTAA	1 cut(s)	876
Tru9I	TTAA	1 cut(s)	876
TscAI	CASTG	3 cut(s)	100, 430, 812
TseFI	GTSAC	5 cut(s)	214, 244, 343, 353, 725
Tsp45I	GTSAC	5 cut(s)	214, 244, 343, 353, 725
TspDTI	ATGAA	6 cut(s)	194, 462, 564, 812, 840, 876
TspRI	CASTG	3 cut(s)	100, 430, 812
Tth111I	GACNNNGTC	2 cut(s)	242, 320
Van91I	CCANNNNNTGG	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	552
XceI	RCATGY	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	989
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	903
XspI	CTAG	2 cut(s)	204, 261
ZraI	GACGTC	1 cut(s)	358
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.