Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

17731434 .. 17734531

Gene Structure 3098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG185800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTCATTGAGGTACTGGGATCCCAATTACTATAGGAAGCGACGAGGAAAACCACAAACAGATGATGGGGAGTTGAAATTTGGTGAATCTTTTTTCTCGTTTGTATTTGGCGATGGTGATCCAAATCAAGGAATTGAAGAAAAGAGATGGAAGATGATTGGGCACTACATATCCTCTAATGGTGGTGTTGTTGCAGCTGAAGAGCTTGCTCCATATCTTGATATAGAAACTTCAGTGGAAACTCCGACTGATGAAGCATACATCTTACCTGTTCTTTCACGGTATGAGGGTCAGCCTTTGATAGATGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.96

Weight (kDa)

4.53

Isoelectric Point (pI)

65.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	14, 27, 113
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	2 cut(s)	216, 219
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	76, 137
AluBI	AGCT	2 cut(s)	197, 205
AluI	AGCT	2 cut(s)	197, 205
AlwI	GGATC	3 cut(s)	14, 27, 113
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	95, 128
BaeGI	GKGCMC	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	3 cut(s)	59, 107, 141
BfmI	CTRYAG	1 cut(s)	31
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	21
BmrI	ACTGGG	1 cut(s)	25
BmuI	ACTGGG	1 cut(s)	25
BsaBI	GATNNNNATC	2 cut(s)	117, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	20
Bse8I	GATNNNNATC	2 cut(s)	117, 123
BseJI	GATNNNNATC	2 cut(s)	117, 123
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	19, 118
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	3 cut(s)	14, 27, 113
BspQI	GCTCTTC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	19, 118
Bst4CI	ACNGT	1 cut(s)	282
Bst6I	CTCTTC	2 cut(s)	195, 303
BstC8I	GCNNGC	1 cut(s)	207
BstKTI	GATC	2 cut(s)	22, 121
BstMBI	GATC	2 cut(s)	19, 118
BstSFI	CTRYAG	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	13
CviJI	RGCY	3 cut(s)	197, 205, 295
CviKI_1	RGCY	3 cut(s)	197, 205, 295
CviQI	GTAC	1 cut(s)	13
DpnI	GATC	2 cut(s)	21, 120
DpnII	GATC	2 cut(s)	19, 118
Eam1104I	CTCTTC	2 cut(s)	195, 303
EarI	CTCTTC	2 cut(s)	195, 303
Eco57I	CTGAAG	2 cut(s)	216, 219
FaiI	YATR	6 cut(s)	33, 170, 214, 224, 259, 285
Fnu4HI	GCNGC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
HinfI	GANTC	1 cut(s)	86
HphI	GGTGA	2 cut(s)	95, 128
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	1 cut(s)	218
Hpy99I	CGWCG	1 cut(s)	45
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4V	TGCA	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	19, 118
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	1 cut(s)	282
Lsp1109I	GCAGC	1 cut(s)	206
MalI	GATC	2 cut(s)	21, 120
MboI	GATC	2 cut(s)	19, 118
MboII	GAAGA	3 cut(s)	149, 163, 212
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	3 cut(s)	25, 77, 132
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	4 cut(s)	3, 38, 184, 280
MspA1I	CMGCKG	1 cut(s)	197
NdeII	GATC	2 cut(s)	19, 118
NlaIV	GGNNCC	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	195
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	19, 118
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	4 cut(s)	14, 199, 207, 271
SfcI	CTRYAG	1 cut(s)	31
SgeI	CNNG	8 cut(s)	28, 56, 109, 140, 218, 230, 281, 291
Sse9I	AATT	3 cut(s)	25, 77, 132
TaaI	ACNGT	1 cut(s)	282
TasI	AATT	3 cut(s)	25, 77, 132
TfiI	GAWTC	1 cut(s)	86
TscAI	CASTG	1 cut(s)	240
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	240
XapI	RAATTY	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.