Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

19483558 .. 19484731

Gene Structure 1174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43939

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCGTCCATGGGTACCTGCTTCACTCTTCCACCAAACCCTTGTCATCATCTCCTTTTCAAAGCTTCACTCTTACCTAATCGTTCCCAAACCCTCCCCATTATCCAAGCCCCCCTTTTCCCGTCCCTTGCCTCCAAGTTTCAACAATCTACGGTTTCTGCGCCGGTTGTGAGAGCCAGCATTGCCGCTGCCGCCACCGGGGTCAGGCCCAGCGGGGCCGTCGAGAGCGATAAGTTACCTTCCGATGTGAGAAAGAGAGCAATGGAAGTTGTGGACGCTTGTGGAAGAAGAGTGACTGTTGATGACGTGGCCGGCAGAGCAGGGCTTAAGCTCCAGGAGGCTCAGAACGCTTTGCAAGCTCTCGCTTCTGACACTCAGGGCTTCTTGGAGGTATCCGATGAAGGTGATGTACTCTATGTTTTCCCCAGAGATTATAGAGCAAAACTTGTAGGGAAATCGTTCATAATGAGAGTTGAGCCGCTGCTTGAGAAGGCAAAGGTAGTAATGTTTATGGGATTTGAAAATTTCTTCATTGTGGTTTTAGGTTATGTAAGAAATTGGCACTCATATGATGGTTTTAGGTTTCATTTGGAACTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.0

Weight (kDa)

8.82

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	26
Acc65I	GGTACC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	4 cut(s)	186, 192, 213, 479
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	523
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	16, 411
AfiI	CCNNNNNNNGG	2 cut(s)	198, 204
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	61, 143, 521
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	3 cut(s)	65, 331, 359
AluI	AGCT	3 cut(s)	65, 331, 359
AoxI	GGCC	3 cut(s)	206, 216, 309
ApeKI	GCWGC	2 cut(s)	188, 481
ApoI	RAATTY	1 cut(s)	523
Asp700I	GAANNNNTTC	1 cut(s)	458
Asp718I	GGTACC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	207, 216
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	14
BarI	GAAGNNNNNNTAC	2 cut(s)	393, 425
BbvI	GCAGC	2 cut(s)	175, 468
BccI	CCATC	1 cut(s)	566
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	335
BciVI	GTATCC	1 cut(s)	403
BcnI	CCSGG	1 cut(s)	199
BfrI	CTTAAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	403
BisI	GCNGC	5 cut(s)	186, 189, 192, 479, 482
BlsI	GCNGC	5 cut(s)	187, 190, 193, 480, 483
Bme1390I	CCNGG	2 cut(s)	199, 335
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	207, 216
BmiI	GGNNCC	2 cut(s)	16, 217
BmrFI	CCNGG	2 cut(s)	199, 335
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	9, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 204
Bse118I	RCCGGY	2 cut(s)	163, 311
Bse3DI	GCAATG	2 cut(s)	180, 267
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	9, 198
BseLI	CCNNNNNNNGG	2 cut(s)	198, 204
BseMI	GCAATG	2 cut(s)	180, 267
BseMII	CTCAG	2 cut(s)	356, 389
BseXI	GCAGC	2 cut(s)	175, 468
BseYI	CCCAGC	1 cut(s)	209
BshFI	GGCC	3 cut(s)	208, 218, 311
BshNI	GGYRCC	1 cut(s)	14
BsiSI	CCGG	3 cut(s)	164, 198, 312
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	198, 204
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	208, 218, 311
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	4 cut(s)	186, 192, 213, 479
BspANI	GGCC	3 cut(s)	208, 218, 311
BspCNI	CTCAG	2 cut(s)	355, 388
BspLI	GGNNCC	2 cut(s)	16, 217
BspMI	ACCTGC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	326
BsrDI	GCAATG	2 cut(s)	180, 267
BsrFI	RCCGGY	2 cut(s)	163, 311
BssAI	RCCGGY	2 cut(s)	163, 311
BssECI	CCNNGG	2 cut(s)	9, 198
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	154, 298
Bst6I	CTCTTC	2 cut(s)	33, 283
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	326
BstC8I	GCNNGC	3 cut(s)	178, 313, 357
BstDEI	CTNAG	2 cut(s)	342, 375
BstDSI	CCRYGG	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 191, 317, 347, 356
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	197, 333
BstV1I	GCAGC	2 cut(s)	175, 468
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	3 cut(s)	208, 218, 311
BtgI	CCRYGG	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	307
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	3 cut(s)	178, 313, 357
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	2 cut(s)	163, 311
Cfr13I	GGNCC	2 cut(s)	207, 216
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	15, 410
CviAII	CATG	1 cut(s)	10
CviQI	GTAC	2 cut(s)	15, 410
DdeI	CTNAG	2 cut(s)	342, 375
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	2 cut(s)	33, 283
EarI	CTCTTC	2 cut(s)	33, 283
Eco130I	CCWWGG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	1 cut(s)	13
FaiI	YATR	8 cut(s)	11, 417, 435, 464, 512, 549, 568, 570
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	1 cut(s)	9
FauI	CCCGC	1 cut(s)	206
FauNDI	CATATG	1 cut(s)	568
Fnu4HI	GCNGC	5 cut(s)	186, 189, 192, 479, 482
Fsp4HI	GCNGC	5 cut(s)	186, 189, 192, 479, 482
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	5 cut(s)	186, 189, 192, 479, 482
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	3 cut(s)	208, 218, 311
HapII	CCGG	3 cut(s)	164, 198, 312
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	63
HpaII	CCGG	3 cut(s)	164, 198, 312
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	5 cut(s)	244, 345, 370, 397, 602
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	249, 395, 484
HpyCH4III	ACNGT	2 cut(s)	154, 298
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 191, 317, 347, 356
HpyF3I	CTNAG	2 cut(s)	342, 375
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	1 cut(s)	161
KpnI	GGTACC	1 cut(s)	18
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	336
Lsp1109I	GCAGC	2 cut(s)	175, 468
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	234, 292
MboII	GAAGA	4 cut(s)	20, 297, 300, 520
MluCI	AATT	2 cut(s)	523, 556
MnlI	CCTC	4 cut(s)	104, 142, 331, 382
MroNI	GCCGGC	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	567
MspA1I	CMGCKG	3 cut(s)	188, 213, 481
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	3 cut(s)	164, 198, 312
MspR9I	CCNGG	2 cut(s)	199, 335
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	5 cut(s)	182, 191, 317, 347, 356
NaeI	GCCGGC	1 cut(s)	313
NciI	CCSGG	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	568
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	16, 217
NmuCI	GTSAC	1 cut(s)	292
PdiI	GCCGGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	458
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	5 cut(s)	187, 190, 193, 480, 483
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	16, 217
PspPI	GGNCC	2 cut(s)	207, 216
RsaI	GTAC	2 cut(s)	16, 411
RsaNI	GTAC	2 cut(s)	15, 410
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	5 cut(s)	186, 189, 192, 479, 482
Sau96I	GGNCC	2 cut(s)	207, 216
ScrFI	CCNGG	2 cut(s)	199, 335
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	2 cut(s)	326, 485
SmoI	CTYRAG	2 cut(s)	326, 485
Sse9I	AATT	2 cut(s)	523, 556
SsiI	CCGC	4 cut(s)	186, 192, 213, 479
StyD4I	CCNGG	2 cut(s)	197, 333
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	154, 298
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	222
TasI	AATT	2 cut(s)	523, 556
TatI	WGTACW	1 cut(s)	409
TauI	GCSGC	3 cut(s)	188, 194, 481
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	188, 481
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	4 cut(s)	414, 451, 520, 575
Vha464I	CTTAAG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.