Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Forward (+)

30476770 .. 30481536

Gene Structure 4767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGTGATCCAAAATCAAGGAATTGAAGAAAAGAGATGGAAGATGATTGGGCACTACATATCCTCTAATGGTGGTGTTGTTGCAGCTGAAGAGCTTGCTCCATATCTTGATATAGAAACTTCAGTGGAAACTCCGACTGATGAAGCATACATCTTACCTGTTCTTTCACGGTATGAGGGTCAGCCTTTAATAGATGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

67

Amino Acids

7.54

Weight (kDa)

4.25

Isoelectric Point (pI)

77.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	105, 108
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	2 cut(s)	86, 94
AluI	AGCT	2 cut(s)	86, 94
ApeKI	GCWGC	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	1 cut(s)	30
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	6
BspQI	GCTCTTC	1 cut(s)	84
BssMI	GATC	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	171
Bst6I	CTCTTC	2 cut(s)	84, 192
BstC8I	GCNNGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	96
CviJI	RGCY	3 cut(s)	86, 94, 184
CviKI_1	RGCY	3 cut(s)	86, 94, 184
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	84, 192
EarI	CTCTTC	2 cut(s)	84, 192
Eco57I	CTGAAG	2 cut(s)	105, 108
FaiI	YATR	5 cut(s)	59, 103, 113, 148, 174
Fnu4HI	GCNGC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	84
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	6
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	1 cut(s)	171
Lsp1109I	GCAGC	1 cut(s)	95
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	3 cut(s)	38, 52, 101
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	2 cut(s)	73, 169
MseI	TTAA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	86
NdeII	GATC	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	3 cut(s)	88, 96, 160
SgeI	CNNG	5 cut(s)	29, 107, 119, 170, 180
Sse9I	AATT	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	171
TasI	AATT	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.