Rh2CG599100

protein At5g03900, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
77434447 .. 77436602
2156 bp
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UTR
Exon/CDS
Intron
Rh2CG599100.1

Sequence Viewer

Length: 510 bp
ATGGAATTTGTGGTTATAGCTTTGTTTAGTGAGTTGAAATTCTATTTTTCAAGATGGTCTCAACAGGTCTCGGATGAAGACGACGTGCTATATGTTTTCCCCAAAGATTATCGAGCAAAGCTTCTTGCCAAATTGTTTCGATTGAGAATTGAGCCTCTGCTGGAGAAAGCAAAGGCAAGGACCAAGTATGTAGTGAGGGTTTCATTTGGAACTGCCATCATTGCCTCCATTGTTCTTGTTTATACTGCAATCATTGTTGCCCTTTCTTCCAGTAGGAGCGAGGATGACAATCGTGGACGACGTGGAAGATCATATGATTCAGGATTCACTTTTTACATGAGTCCCTTTATGGGTGACTATGATTATGTATTTTCTGAGAATGGTCTTGTGGCTCACAAAGATGTGAAGCTCATTTGCACCCAGGTCATGTTGTTCATGAAGAAGACGATGACCAAGGTTGTGCGGATGGGAAGGTCCGATTATGGGATAGTCTCTCTAATGATTGTGTAA

Protein Analysis

169

Amino Acids

19.51

Weight (kDa)

9.49

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000516)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03900 AT5G03900
fragaria_vesca FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis pycom12g02390 pycom14g02210
rosa_chinensis RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 463
AcsI RAATTY 2 cut(s) 5, 38
AfiI CCNNNNNNNGG 2 cut(s) 350, 483
AgsI TTSAA 2 cut(s) 37, 51
AjiI CACGTC 2 cut(s) 85, 302
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 3 cut(s) 20, 121, 409
AluI AGCT 3 cut(s) 20, 121, 409
Alw26I GTCTC 3 cut(s) 63, 73, 496
ApoI RAATTY 2 cut(s) 5, 38
AspS9I GGNCC 2 cut(s) 180, 474
AsuHPI GGTGA 1 cut(s) 365
AvaII GGWCC 2 cut(s) 180, 474
BbsI GAAGAC 2 cut(s) 84, 449
BccI CCATC 3 cut(s) 48, 224, 460
BciT130I CCWGG 1 cut(s) 422
BcoDI GTCTC 3 cut(s) 63, 73, 496
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 2 cut(s) 180, 474
BmgBI CACGTC 2 cut(s) 85, 302
BmgT120I GGNCC 2 cut(s) 180, 474
BmrFI CCNGG 1 cut(s) 422
BpiI GAAGAC 2 cut(s) 84, 449
BpmI CTGGAG 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 288
BsaI GGTCTC 2 cut(s) 63, 73
BsaJI CCNNGG 2 cut(s) 420, 453
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 483
Bse1I ACTGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 2 cut(s) 420, 453
BseGI GGATG 3 cut(s) 79, 289, 471
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 2 cut(s) 350, 483
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 350, 483
BsmAI GTCTC 3 cut(s) 63, 73, 496
BsmFI GGGAC 1 cut(s) 327
Bso31I GGTCTC 2 cut(s) 63, 73
Bsp143I GATC 1 cut(s) 308
BspACI CCGC 1 cut(s) 463
BspCNI CTCAG 1 cut(s) 367
BspHI TCATGA 1 cut(s) 435
BspTNI GGTCTC 2 cut(s) 63, 73
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 270
BssECI CCNNGG 2 cut(s) 420, 453
BssMI GATC 1 cut(s) 308
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 422
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 3 cut(s) 79, 289, 471
BstKTI GATC 1 cut(s) 311
BstMAI GTCTC 3 cut(s) 63, 73, 496
BstMBI GATC 1 cut(s) 308
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 420
BstV2I GAAGAC 2 cut(s) 84, 449
BtrI CACGTC 2 cut(s) 85, 302
BtsCI GGATG 3 cut(s) 79, 289, 471
CciI TCATGA 1 cut(s) 435
Cfr13I GGNCC 2 cut(s) 180, 474
CviAII CATG 3 cut(s) 337, 427, 436
CviJI RGCY 5 cut(s) 20, 121, 154, 392, 409
CviKI_1 RGCY 5 cut(s) 20, 121, 154, 392, 409
DdeI CTNAG 1 cut(s) 375
DpnI GATC 1 cut(s) 310
DpnII GATC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 453
Eco31I GGTCTC 2 cut(s) 63, 73
Eco47I GGWCC 2 cut(s) 180, 474
EcoRII CCWGG 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 3 cut(s) 340, 430, 439
FaqI GGGAC 1 cut(s) 327
FatI CATG 3 cut(s) 336, 426, 435
FauNDI CATATG 1 cut(s) 313
FokI GGATG 3 cut(s) 86, 296, 478
GsuI CTGGAG 1 cut(s) 182
Hin1II CATG 3 cut(s) 340, 430, 439
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 3 cut(s) 317, 324, 340
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 3 cut(s) 73, 376, 478
Hpy188III TCNNGA 3 cut(s) 51, 321, 436
Hpy8I GTNNAC 1 cut(s) 296
Hpy99I CGWCG 2 cut(s) 86, 303
HpyAV CCTTC 1 cut(s) 465
HpyCH4IV ACGT 2 cut(s) 84, 301
HpyCH4V TGCA 2 cut(s) 248, 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 2 cut(s) 84, 301
Hsp92II CATG 3 cut(s) 340, 430, 439
Kzo9I GATC 1 cut(s) 308
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 6 cut(s) 50, 146, 283, 306, 407, 434
MaeII ACGT 2 cut(s) 84, 301
MaeIII GTNAC 1 cut(s) 353
MalI GATC 1 cut(s) 310
MboI GATC 1 cut(s) 308
MboII GAAGA 5 cut(s) 89, 258, 318, 451, 454
MluCI AATT 4 cut(s) 5, 38, 131, 147
MlyI GAGTC 1 cut(s) 349
MnlI CCTC 4 cut(s) 165, 189, 235, 274
MslI CAYNNNNRTG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 422
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeI CATATG 1 cut(s) 313
NdeII GATC 1 cut(s) 308
NlaIII CATG 3 cut(s) 340, 430, 439
NmuCI GTSAC 1 cut(s) 353
PagI TCATGA 1 cut(s) 435
PcsI WCGNNNNNNNCGW 1 cut(s) 298
PfeI GAWTC 2 cut(s) 317, 324
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspPI GGNCC 2 cut(s) 180, 474
RseI CAYNNNNRTG 1 cut(s) 399
Sau3AI GATC 1 cut(s) 308
Sau96I GGNCC 2 cut(s) 180, 474
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 1 cut(s) 422
SetI ASST 9 cut(s) 22, 69, 87, 123, 304, 411, 426, 459, 476
SinI GGWCC 2 cut(s) 180, 474
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 4 cut(s) 5, 38, 131, 147
SsiI CCGC 1 cut(s) 463
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 1 cut(s) 453
TaiI ACGT 2 cut(s) 87, 304
TaqI TCGA 2 cut(s) 112, 139
TasI AATT 4 cut(s) 5, 38, 131, 147
TfiI GAWTC 2 cut(s) 317, 324
TseFI GTSAC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 4 cut(s) 90, 192, 424, 452
VpaK11BI GGWCC 2 cut(s) 180, 474
XapI RAATTY 2 cut(s) 5, 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.