Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

12355039 .. 12359164

Gene Structure 4126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTTTCGACAGGATGGGGCGGAGTATTTAGTAAGGGTTTCATTTGGAACTGCTCTGATTGTCTCCATTATTCTTGTTTCTACTGCAATTGTTGTTGCCCTTCTTTCTGCGAGTTCCTCTGATAAAAAAAGTGACAGTAGTGATGATGATGATAGGAAGAAGTCCGGTGGAGGAATCTCATATTGGAGCAGTTCTCGTTCTTCAACTAGGATCAGTTTCTCCTCGTGTCGTGATGATGTATTTTGGTACTGGGATCGCAATTACTATAGGAAGCGACAAAAAAAAGATGATGGGGAGTTGAAATATGGTGAATCTTTTTTCTCATTTGTGTTTGGCGATGGCGATCCAAATCCAGGAATTGAACAAAAGAGATGGAGGATGATAGGGCACTACATATCCTCTAATGGTGGTGGTGTTGCAGCTGAAGAGCTTGCTCCATATCTTGATATTGAAACTTCAGGGGAAACGCTGGGAAACATTCTGTACCAGTTTCCATCTCTACAACGCACAGCTGATAAAAGAACATGGACACGGTTTGATGGAGAACCTGGGAAGTTTTTGAAGGAGGAGAAATGGCAGTTCAGTAAAACTAGAATTGGTGAGAGAGCAATGGTCATTGGACTTGGTGTATTCAATTTATGTGGGGTTATCATTCTGAGAGACTTGTTAATGGATCCTACAGTTGCAAAAGATGCTTTTCTCAAGTTCATTACAAGCATATTCCCTCTACTTCAGATTTATGCTGGTTCCTTCTTCCTGATTCCTCTGTTGCGTTGGTTTGTCTTGCTCAAGACAAATGCTGACATAGAAAAAAGAAATCAAGCCAGACAGCAATTTGCTCGAGACATTGAATATCCTGATCTCTCACTAAGACAAAAGCTCCTCAGTGCTCGGAATATGGCCGAAAGAACTATCATAGGGCAGGACAAAATTGTTTATAGCTCTGGCAAGGATTTGGTTGAGCAAGAGTTTGGTGGGGGGTTTCAGCATATAGATAAGTCAGATAAAAGAAAGTCTACTATTACTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

39.07

Weight (kDa)

8.96

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1016
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	5 cut(s)	218, 261, 338, 668, 681
AcoI	YGGCCR	1 cut(s)	900
AcuI	CTGAAG	3 cut(s)	441, 444, 716
AfaI	GTAC	2 cut(s)	248, 485
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	7 cut(s)	204, 301, 362, 452, 562, 634, 851
AjnI	CCWGG	2 cut(s)	352, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AluBI	AGCT	5 cut(s)	422, 430, 512, 880, 942
AluI	AGCT	5 cut(s)	422, 430, 512, 880, 942
Alw21I	GWGCWC	1 cut(s)	892
Alw26I	GTCTC	3 cut(s)	67, 654, 837
AlwI	GGATC	5 cut(s)	218, 261, 338, 668, 681
Ama87I	CYCGRG	1 cut(s)	840
AoxI	GGCC	1 cut(s)	900
ApeKI	GCWGC	1 cut(s)	419
AsuHPI	GGTGA	2 cut(s)	320, 611
AvaI	CYCGRG	1 cut(s)	840
BaeGI	GKGCMC	1 cut(s)	390
BamHI	GGATCC	1 cut(s)	673
BauI	CACGAG	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	892
BbvI	GCAGC	1 cut(s)	431
BccI	CCATC	6 cut(s)	8, 284, 332, 366, 502, 533
BcgI	CGANNNNNNTGC	2 cut(s)	821, 855
BciT130I	CCWGG	2 cut(s)	354, 549
BcoDI	GTCTC	3 cut(s)	67, 654, 837
BfaI	CTAG	2 cut(s)	207, 591
BfmI	CTRYAG	2 cut(s)	265, 678
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
Bme1390I	CCNGG	2 cut(s)	354, 549
BmeT110I	CYCGRG	1 cut(s)	840
BmiI	GGNNCC	2 cut(s)	675, 748
BmrFI	CCNGG	2 cut(s)	354, 549
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	682
BmuI	ACTGGG	1 cut(s)	259
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
BpuEI	CTTGAG	2 cut(s)	686, 773
BsaBI	GATNNNNATC	2 cut(s)	342, 348
BsaJI	CCNNGG	1 cut(s)	548
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	864, 894
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	2 cut(s)	254, 487
Bse3DI	GCAATG	1 cut(s)	615
Bse8I	GATNNNNATC	2 cut(s)	342, 348
BseBI	CCWGG	2 cut(s)	354, 549
BseDI	CCNNGG	1 cut(s)	548
BseGI	GGATG	2 cut(s)	19, 384
BseJI	GATNNNNATC	2 cut(s)	342, 348
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	2 cut(s)	647, 898
BseNI	ACTGG	2 cut(s)	254, 487
BseRI	GAGGAG	3 cut(s)	211, 581, 872
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	431
BseYI	CCCAGC	1 cut(s)	469
BshFI	GGCC	1 cut(s)	902
BsiHKAI	GWGCWC	1 cut(s)	892
BsiHKCI	CYCGRG	1 cut(s)	840
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	3 cut(s)	67, 654, 837
BsnI	GGCC	1 cut(s)	902
BsoBI	CYCGRG	1 cut(s)	840
Bsp1286I	GDGCHC	2 cut(s)	390, 892
Bsp143I	GATC	5 cut(s)	210, 253, 343, 673, 859
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	902
BspCNI	CTCAG	2 cut(s)	648, 897
BspLI	GGNNCC	2 cut(s)	675, 748
BspPI	GGATC	5 cut(s)	218, 261, 338, 668, 681
BspQI	GCTCTTC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	615
BsrI	ACTGG	2 cut(s)	254, 487
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	5 cut(s)	210, 253, 343, 673, 859
BssSI	CACGAG	1 cut(s)	223
Bst2BI	CACGAG	1 cut(s)	223
Bst2UI	CCWGG	2 cut(s)	354, 549
Bst4CI	ACNGT	3 cut(s)	137, 534, 682
Bst6I	CTCTTC	1 cut(s)	420
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	656, 869, 884
BstF5I	GGATG	2 cut(s)	19, 384
BstKTI	GATC	5 cut(s)	213, 256, 346, 676, 862
BstMAI	GTCTC	3 cut(s)	67, 654, 837
BstMBI	GATC	5 cut(s)	210, 253, 343, 673, 859
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstNI	CCWGG	2 cut(s)	354, 549
BstSCI	CCNGG	2 cut(s)	352, 547
BstSFI	CTRYAG	2 cut(s)	265, 678
BstSLI	GKGCMC	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
BsuRI	GGCC	1 cut(s)	902
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	19, 384
BtsIMutI	CAGTG	1 cut(s)	892
Cac8I	GCNNGC	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	247, 484
CspCI	CAANNNNNGTGG	2 cut(s)	622, 657
CviAII	CATG	1 cut(s)	525
CviJI	RGCY	7 cut(s)	422, 430, 512, 824, 880, 902, 942
CviKI_1	RGCY	7 cut(s)	422, 430, 512, 824, 880, 902, 942
CviQI	GTAC	2 cut(s)	247, 484
DdeI	CTNAG	3 cut(s)	656, 869, 884
DpnI	GATC	5 cut(s)	212, 255, 345, 675, 861
DpnII	GATC	5 cut(s)	210, 253, 343, 673, 859
EaeI	YGGCCR	1 cut(s)	900
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	35
Eco57I	CTGAAG	3 cut(s)	441, 444, 716
Eco88I	CYCGRG	1 cut(s)	840
EcoRII	CCWGG	2 cut(s)	352, 547
FaeI	CATG	1 cut(s)	528
FatI	CATG	1 cut(s)	524
FblI	GTMKAC	1 cut(s)	1016
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	2 cut(s)	26, 391
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	2 cut(s)	207, 591
GluI	GCNGC	1 cut(s)	420
GsaI	CCCAGC	1 cut(s)	473
HaeIII	GGCC	1 cut(s)	902
HapII	CCGG	1 cut(s)	165
Hin1II	CATG	1 cut(s)	528
HinfI	GANTC	3 cut(s)	174, 311, 760
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	2 cut(s)	320, 611
Hpy166II	GTNNAC	1 cut(s)	1017
Hpy188I	TCNGA	6 cut(s)	57, 121, 657, 735, 894, 1003
Hpy188III	TCNNGA	6 cut(s)	230, 443, 757, 790, 842, 857
Hpy8I	GTNNAC	1 cut(s)	1017
HpyAV	CCTTC	3 cut(s)	110, 556, 760
HpyCH4III	ACNGT	3 cut(s)	137, 534, 682
HpyCH4V	TGCA	3 cut(s)	86, 419, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	3 cut(s)	656, 869, 884
Hsp92II	CATG	1 cut(s)	528
Kzo9I	GATC	5 cut(s)	210, 253, 343, 673, 859
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	3 cut(s)	186, 439, 885
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	2 cut(s)	207, 591
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	5 cut(s)	212, 255, 345, 675, 861
MboI	GATC	5 cut(s)	210, 253, 343, 673, 859
MboII	GAAGA	4 cut(s)	169, 192, 437, 745
MfeI	CAATTG	1 cut(s)	87
MflI	RGATCY	1 cut(s)	673
MhlI	GDGCHC	2 cut(s)	390, 892
MluCI	AATT	7 cut(s)	87, 259, 357, 594, 634, 833, 930
MnlI	CCTC	9 cut(s)	127, 164, 232, 369, 409, 559, 735, 774, 893
MseI	TTAA	1 cut(s)	668
MspA1I	CMGCKG	2 cut(s)	422, 512
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	354, 549
MunI	CAATTG	1 cut(s)	87
MvaI	CCWGG	2 cut(s)	354, 549
MwoI	GCNNNNNNNGC	1 cut(s)	692
NdeII	GATC	5 cut(s)	210, 253, 343, 673, 859
NlaIII	CATG	1 cut(s)	528
NlaIV	GGNNCC	2 cut(s)	675, 748
NmuCI	GTSAC	1 cut(s)	131
PaeR7I	CTCGAG	1 cut(s)	840
PciSI	GCTCTTC	1 cut(s)	420
PfeI	GAWTC	3 cut(s)	174, 311, 760
PfoI	TCCNGGA	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	352, 547
PspFI	CCCAGC	1 cut(s)	469
PspGI	CCWGG	2 cut(s)	352, 547
PspN4I	GGNNCC	2 cut(s)	675, 748
PsuI	RGATCY	1 cut(s)	673
PvuII	CAGCTG	2 cut(s)	422, 512
RsaI	GTAC	2 cut(s)	248, 485
RsaNI	GTAC	2 cut(s)	247, 484
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	668
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	5 cut(s)	210, 253, 343, 673, 859
ScrFI	CCNGG	2 cut(s)	354, 549
SduI	GDGCHC	2 cut(s)	390, 892
SetI	ASST	6 cut(s)	424, 432, 514, 550, 882, 944
SfaNI	GCATC	1 cut(s)	682
SfcI	CTRYAG	2 cut(s)	265, 678
Sfr274I	CTCGAG	1 cut(s)	840
SlaI	CTCGAG	1 cut(s)	840
SmlI	CTYRAG	3 cut(s)	701, 788, 840
SmoI	CTYRAG	3 cut(s)	701, 788, 840
Sse9I	AATT	7 cut(s)	87, 259, 357, 594, 634, 833, 930
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	2 cut(s)	207, 591
StyD4I	CCNGG	2 cut(s)	352, 547
TaaI	ACNGT	3 cut(s)	137, 534, 682
TaqI	TCGA	2 cut(s)	7, 841
TasI	AATT	7 cut(s)	87, 259, 357, 594, 634, 833, 930
TfiI	GAWTC	3 cut(s)	174, 311, 760
Tru1I	TTAA	1 cut(s)	668
Tru9I	TTAA	1 cut(s)	668
TscAI	CASTG	1 cut(s)	892
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	30, 697
TspRI	CASTG	1 cut(s)	892
XhoI	CTCGAG	1 cut(s)	840
XmiI	GTMKAC	1 cut(s)	1016
XspI	CTAG	2 cut(s)	207, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.