RchiOBHm_Chr7g0229131

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000516
Physical Location & Seq
Forward (+)
52514698 .. 52515117
420 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20525

Sequence Viewer

Length: 183 bp
ATGGTCCATACTTATGTTTCACTTCTTCATTGTCCTCGTCAATTTTGTCATGTTGTTCATGAAGAAGACGATGACCAAGGCGAGGTTTACATTGATGAAGCTGACATCCTTAACAAAGTTGATTTCGATGAGGAAGGTGCTCAGTTTTCTCAATCATGTGTTGGTGGCTGCAGATCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

60

Amino Acids

6.79

Weight (kDa)

4.31

Isoelectric Point (pI)

55.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000516)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03900 AT5G03900
fragaria_vesca FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis pycom12g02390 pycom14g02210
rosa_chinensis RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 82
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw21I GWGCWC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 169
BglII AGATCT 1 cut(s) 173
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 154
BspHI TCATGA 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 1 cut(s) 176
BstMBI GATC 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BtsCI GGATG 1 cut(s) 105
CciI TCATGA 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 3 cut(s) 50, 59, 156
CviJI RGCY 2 cut(s) 101, 168
CviKI_1 RGCY 2 cut(s) 101, 168
DdeI CTNAG 1 cut(s) 141
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 3 cut(s) 53, 62, 159
FaiI YATR 5 cut(s) 9, 15, 51, 60, 157
FatI CATG 3 cut(s) 49, 58, 155
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 169
Hin1II CATG 3 cut(s) 53, 62, 159
Hpy166II GTNNAC 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 59, 180
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 171
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 3 cut(s) 53, 62, 159
Kzo9I GATC 1 cut(s) 173
Lsp1109I GCAGC 1 cut(s) 155
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MboII GAAGA 4 cut(s) 17, 74, 77, 168
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 1 cut(s) 41
MnlI CCTC 3 cut(s) 45, 76, 124
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 12
NdeII GATC 1 cut(s) 173
NlaIII CATG 3 cut(s) 53, 62, 159
PagI TCATGA 1 cut(s) 58
PkrI GCNGC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 142
SetI ASST 3 cut(s) 87, 103, 139
SfcI CTRYAG 1 cut(s) 169
SgeI CNNG 6 cut(s) 48, 62, 71, 89, 94, 168
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 1 cut(s) 41
StyI CCWWGG 1 cut(s) 76
TaqI TCGA 1 cut(s) 126
TasI AATT 1 cut(s) 41
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 4 cut(s) 17, 47, 75, 111
VpaK11BI GGWCC 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.