Rmu_sc0000302.1_g000016

protein At5g03900, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000302.1
Physical Location & Seq
Forward (+)
53188 .. 60226
7039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000302.1_g000016.1.cds

Sequence Viewer

Length: 1056 bp
atgcccgcatcttcctccataactccaaatcaccactacataatcccattatacttcaagaaaggcttggcggtaccggtgaaagttgattgcctcccgaaaggtaggccctcacctcatatccaaatcctcactctttcggtctttcccgactgcctccacacctttcctctctcccaaacacccattttccctgggttctcttccaaggttcgagattctagggtttcggtgacggtcgttcgagccagccttgacgcagtcaccagaattaggcctggcggagctatcgagagcgataagctaccgtccgatgtgaggaagcacaccatggacgttgtcgacgcctgcggagggagagtgacgattggtgacgcctccagcagagctgggctcaagctcaatgaggctcagaacgctttgcaggctttcgctgccgacactgagggcttcttggaggtctcggatgaaggcgatgtgctttatgttttccccaaagattatcgagcaaatcttcttgccaaatcgtttcgattgagcattgagcctctgctggagaaagcaaaggtagtttttctttctggaatttgttcttgcaagctgttggatagcctggccaagctgaaggtgtcgttcaacaacgaccacaagggcgaggtgtctccgcctcatgtgtcatttatctctcaatacctctccattcactacaacttcgaagatcagtctaccctcctcaacagctccgtcgatgttggtcccagattgcaattccgtgcttcccatgatctcaaggcacaacaaggagaggcgactatggttgccaagcttgctgaccctggatatgcatttcaactctcttcttctttcccttctactggtttggttcaagtccaccaagtgaaggaggatacgatttcgaagctgatggagaatcttaagcaaaatcagcttgatatggagaagagaatcaacgagaaatgtgatcctgtcaagttgatccggagtcaattggatgtagccaaggcgcttaacggaatggccaatggttctaaataa

Protein Analysis

351

Amino Acids

38.42

Weight (kDa)

8.61

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000516)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03900 AT5G03900
fragaria_vesca FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis pycom12g02390 pycom14g02210
rosa_chinensis RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 73
AccI GTMKAC 2 cut(s) 342, 725
AccIII TCCGGA 1 cut(s) 999
AciI CCGC 5 cut(s) 6, 71, 282, 351, 665
AclWI GGATC 2 cut(s) 977, 991
AcoI YGGCCR 2 cut(s) 615, 1038
AcsI RAATTY 1 cut(s) 585
AcuI CTGAAG 1 cut(s) 644
AcyI GRCGYC 2 cut(s) 345, 375
AdeI CACNNNGTG 1 cut(s) 898
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 5 cut(s) 273, 318, 354, 875, 901
AflII CTTAAG 1 cut(s) 935
AgeI ACCGGT 1 cut(s) 76
AgsI TTSAA 4 cut(s) 58, 637, 851, 887
AjnI CCWGG 4 cut(s) 193, 277, 612, 835
Alw26I GTCTC 2 cut(s) 466, 666
AlwI GGATC 2 cut(s) 977, 991
Aor13HI TCCGGA 1 cut(s) 999
AoxI GGCC 4 cut(s) 107, 275, 615, 1038
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 1 cut(s) 585
AsiGI ACCGGT 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 589
Asp718I GGTACC 1 cut(s) 73
AspLEI GCGC 1 cut(s) 1027
AspS9I GGNCC 2 cut(s) 108, 755
AsuHPI GGTGA 6 cut(s) 23, 91, 105, 244, 256, 383
AsuII TTCGAA 2 cut(s) 714, 917
AvaII GGWCC 1 cut(s) 755
BalI TGGCCA 2 cut(s) 617, 1040
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 421
BccI CCATC 1 cut(s) 919
BciT130I CCWGG 4 cut(s) 195, 279, 614, 837
BciVI GTATCC 1 cut(s) 901
BcoDI GTCTC 2 cut(s) 466, 666
BfaI CTAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 1028
BfrI CTTAAG 1 cut(s) 935
BfuI GTATCC 1 cut(s) 901
BisI GCNGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 436
Bme1390I CCNGG 4 cut(s) 195, 279, 614, 837
Bme18I GGWCC 1 cut(s) 755
BmgT120I GGNCC 2 cut(s) 108, 755
BmiI GGNNCC 2 cut(s) 75, 757
BmrFI CCNGG 4 cut(s) 195, 279, 614, 837
BmsI GCATC 1 cut(s) 17
BplI GAGNNNNNCTC 2 cut(s) 378, 410
BpmI CTGGAG 2 cut(s) 364, 575
Bpu14I TTCGAA 2 cut(s) 714, 917
BpuEI CTTGAG 2 cut(s) 380, 773
BsaHI GRCGYC 2 cut(s) 345, 375
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 6 cut(s) 193, 194, 207, 330, 835, 1020
BsaWI WCCGGW 2 cut(s) 76, 999
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 5 cut(s) 273, 318, 354, 875, 901
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 880
BseAI TCCGGA 1 cut(s) 999
BseBI CCWGG 4 cut(s) 195, 279, 614, 837
BseDI CCNNGG 6 cut(s) 193, 194, 207, 330, 835, 1020
BseGI GGATG 2 cut(s) 472, 1018
BseLI CCNNNNNNNGG 5 cut(s) 273, 318, 354, 875, 901
BseMII CTCAG 2 cut(s) 425, 435
BseNI ACTGG 1 cut(s) 880
BseRI GAGGAG 1 cut(s) 722
BseXI GCAGC 1 cut(s) 421
BseYI CCCAGC 1 cut(s) 389
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 4 cut(s) 109, 277, 617, 1040
BshNI GGYRCC 1 cut(s) 73
BshTI ACCGGT 1 cut(s) 76
BsiEI CGRYCG 1 cut(s) 240
BsiSI CCGG 2 cut(s) 77, 1000
BslFI GGGAC 1 cut(s) 741
BslI CCNNNNNNNGG 5 cut(s) 273, 318, 354, 875, 901
BsmAI GTCTC 2 cut(s) 466, 666
BsmFI GGGAC 1 cut(s) 741
BsnI GGCC 4 cut(s) 109, 277, 617, 1040
Bso31I GGTCTC 1 cut(s) 466
Bsp119I TTCGAA 2 cut(s) 714, 917
Bsp1286I GDGCHC 1 cut(s) 396
Bsp13I TCCGGA 1 cut(s) 999
Bsp143I GATC 4 cut(s) 718, 784, 982, 996
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 5 cut(s) 6, 71, 282, 351, 665
BspANI GGCC 4 cut(s) 109, 277, 617, 1040
BspCNI CTCAG 2 cut(s) 424, 436
BspEI TCCGGA 1 cut(s) 999
BspLI GGNNCC 2 cut(s) 75, 757
BspPI GGATC 2 cut(s) 977, 991
BspT104I TTCGAA 2 cut(s) 714, 917
BspT107I GGYRCC 1 cut(s) 73
BspTI CTTAAG 1 cut(s) 935
BspTNI GGTCTC 1 cut(s) 466
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 1 cut(s) 880
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 6 cut(s) 193, 194, 207, 330, 835, 1020
BssMI GATC 4 cut(s) 718, 784, 982, 996
BssNI GRCGYC 2 cut(s) 345, 375
BssT1I CCWWGG 3 cut(s) 207, 330, 1020
Bst2UI CCWGG 4 cut(s) 195, 279, 614, 837
Bst4CI ACNGT 2 cut(s) 238, 309
Bst6I CTCTTC 3 cut(s) 208, 862, 956
BstACI GRCGYC 2 cut(s) 345, 375
BstAFI CTTAAG 1 cut(s) 935
BstBI TTCGAA 2 cut(s) 714, 917
BstC8I GCNNGC 6 cut(s) 6, 250, 349, 426, 599, 828
BstDEI CTNAG 2 cut(s) 411, 444
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 472, 1018
BstH2I RGCGCY 1 cut(s) 1028
BstHHI GCGC 1 cut(s) 1027
BstKTI GATC 4 cut(s) 721, 787, 985, 999
BstMAI GTCTC 2 cut(s) 466, 666
BstMBI GATC 4 cut(s) 718, 784, 982, 996
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 5 cut(s) 416, 425, 434, 827, 946
BstNI CCWGG 4 cut(s) 195, 279, 614, 837
BstSCI CCNGG 4 cut(s) 193, 277, 612, 835
BstV1I GCAGC 1 cut(s) 421
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 4 cut(s) 109, 277, 617, 1040
BtgI CCRYGG 1 cut(s) 330
BtgZI GCGATG 1 cut(s) 489
BtsCI GGATG 2 cut(s) 472, 1018
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 6 cut(s) 6, 250, 349, 426, 599, 828
CfoI GCGC 1 cut(s) 1027
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 108, 755
CseI GACGC 3 cut(s) 266, 353, 383
Csp6I GTAC 1 cut(s) 74
CspAI ACCGGT 1 cut(s) 76
CviAII CATG 3 cut(s) 331, 671, 782
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 2 cut(s) 411, 444
DpnI GATC 4 cut(s) 720, 786, 984, 998
DpnII GATC 4 cut(s) 718, 784, 982, 996
DraIII CACNNNGTG 1 cut(s) 898
EaeI YGGCCR 2 cut(s) 615, 1038
Eam1104I CTCTTC 3 cut(s) 208, 862, 956
EarI CTCTTC 3 cut(s) 208, 862, 956
EciI GGCGGA 2 cut(s) 297, 654
Eco130I CCWWGG 3 cut(s) 207, 330, 1020
Eco147I AGGCCT 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 755
Eco57I CTGAAG 1 cut(s) 644
EcoO109I RGGNCCY 1 cut(s) 108
EcoRII CCWGG 4 cut(s) 193, 277, 612, 835
EcoT14I CCWWGG 3 cut(s) 207, 330, 1020
EcoT22I ATGCAT 1 cut(s) 847
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 3 cut(s) 207, 330, 1020
FaeI CATG 3 cut(s) 334, 674, 785
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FaqI GGGAC 1 cut(s) 741
FatI CATG 3 cut(s) 330, 670, 781
FauI CCCGC 1 cut(s) 13
FblI GTMKAC 2 cut(s) 342, 725
Fnu4HI GCNGC 1 cut(s) 435
FokI GGATG 2 cut(s) 479, 1025
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 1 cut(s) 435
FspBI CTAG 1 cut(s) 222
GlaI GCGC 1 cut(s) 1026
GluI GCNGC 1 cut(s) 435
GsaI CCCAGC 1 cut(s) 393
GsuI CTGGAG 2 cut(s) 364, 575
HaeII RGCGCY 1 cut(s) 1028
HaeIII GGCC 4 cut(s) 109, 277, 617, 1040
HapII CCGG 2 cut(s) 77, 1000
HgaI GACGC 3 cut(s) 266, 353, 383
HhaI GCGC 1 cut(s) 1027
Hin1I GRCGYC 2 cut(s) 345, 375
Hin1II CATG 3 cut(s) 334, 674, 785
Hin6I GCGC 1 cut(s) 1025
HinP1I GCGC 1 cut(s) 1025
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 4 cut(s) 218, 931, 966, 1003
HpaII CCGG 2 cut(s) 77, 1000
HphI GGTGA 6 cut(s) 23, 91, 105, 244, 256, 383
Hpy166II GTNNAC 3 cut(s) 343, 726, 892
Hpy188I TCNGA 3 cut(s) 313, 414, 466
Hpy188III TCNNGA 7 cut(s) 58, 97, 149, 215, 292, 582, 1000
Hpy8I GTNNAC 3 cut(s) 343, 726, 892
Hpy99I CGWCG 2 cut(s) 347, 749
HpyAV CCTTC 4 cut(s) 464, 619, 879, 895
HpyCH4III ACNGT 2 cut(s) 238, 309
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 4 cut(s) 424, 597, 766, 845
HpyF10VI GCNNNNNNNGC 5 cut(s) 416, 425, 434, 827, 946
HpyF3I CTNAG 2 cut(s) 411, 444
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 2 cut(s) 345, 375
Hsp92II CATG 3 cut(s) 334, 674, 785
HspAI GCGC 1 cut(s) 1025
Kpn2I TCCGGA 1 cut(s) 999
KpnI GGTACC 1 cut(s) 77
Kzo9I GATC 4 cut(s) 718, 784, 982, 996
LmnI GCTCC 2 cut(s) 284, 746
Lsp1109I GCAGC 1 cut(s) 421
LweI GCATC 1 cut(s) 17
MaeI CTAG 1 cut(s) 222
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 4 cut(s) 232, 262, 361, 371
MalI GATC 4 cut(s) 720, 786, 984, 998
MboI GATC 4 cut(s) 718, 784, 982, 996
MboII GAAGA 7 cut(s) 3, 195, 506, 728, 849, 852, 973
MfeI CAATTG 1 cut(s) 1007
MhlI GDGCHC 1 cut(s) 396
MlsI TGGCCA 2 cut(s) 617, 1040
MluCI AATT 4 cut(s) 270, 585, 767, 1007
MluNI TGGCCA 2 cut(s) 617, 1040
MlyI GAGTC 1 cut(s) 1012
MmeI TCCRAC 1 cut(s) 585
Mox20I TGGCCA 2 cut(s) 617, 1040
Mph1103I ATGCAT 1 cut(s) 847
MroI TCCGGA 1 cut(s) 999
MroXI GAANNNNTTC 1 cut(s) 589
MscI TGGCCA 2 cut(s) 617, 1040
MseI TTAA 2 cut(s) 936, 1029
Msp20I TGGCCA 2 cut(s) 617, 1040
MspCI CTTAAG 1 cut(s) 935
MspI CCGG 2 cut(s) 77, 1000
MspR9I CCNGG 4 cut(s) 195, 279, 614, 837
MunI CAATTG 1 cut(s) 1007
MvaI CCWGG 4 cut(s) 195, 279, 614, 837
MwoI GCNNNNNNNGC 5 cut(s) 416, 425, 434, 827, 946
NcoI CCATGG 1 cut(s) 330
NdeII GATC 4 cut(s) 718, 784, 982, 996
NlaIII CATG 3 cut(s) 334, 674, 785
NlaIV GGNNCC 2 cut(s) 75, 757
NmuCI GTSAC 4 cut(s) 232, 262, 361, 371
NsiI ATGCAT 1 cut(s) 847
NspV TTCGAA 2 cut(s) 714, 917
PasI CCCWGGG 1 cut(s) 194
PceI AGGCCT 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 589
PfeI GAWTC 3 cut(s) 218, 931, 966
PflFI GACNNNGTC 2 cut(s) 260, 338
PinAI ACCGGT 1 cut(s) 76
PkrI GCNGC 1 cut(s) 436
PleI GAGTC 1 cut(s) 1011
PpsI GAGTC 1 cut(s) 1011
Psp6I CCWGG 4 cut(s) 193, 277, 612, 835
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 4 cut(s) 193, 277, 612, 835
PspN4I GGNNCC 2 cut(s) 75, 757
PspPI GGNCC 2 cut(s) 108, 755
PsyI GACNNNGTC 2 cut(s) 260, 338
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SalI GTCGAC 1 cut(s) 341
SaqAI TTAA 2 cut(s) 936, 1029
SatI GCNGC 1 cut(s) 435
Sau3AI GATC 4 cut(s) 718, 784, 982, 996
Sau96I GGNCC 2 cut(s) 108, 755
SchI GAGTC 1 cut(s) 1012
ScrFI CCNGG 4 cut(s) 195, 279, 614, 837
SduI GDGCHC 1 cut(s) 396
SfaNI GCATC 1 cut(s) 17
SfuI TTCGAA 2 cut(s) 714, 917
SinI GGWCC 1 cut(s) 755
SmlI CTYRAG 3 cut(s) 395, 788, 935
SmoI CTYRAG 3 cut(s) 395, 788, 935
Sse9I AATT 4 cut(s) 270, 585, 767, 1007
SseBI AGGCCT 1 cut(s) 277
SsiI CCGC 5 cut(s) 6, 71, 282, 351, 665
SspMI CTAG 1 cut(s) 222
StuI AGGCCT 1 cut(s) 277
StyD4I CCNGG 4 cut(s) 193, 277, 612, 835
StyI CCWWGG 3 cut(s) 207, 330, 1020
TaaI ACNGT 2 cut(s) 238, 309
TaiI ACGT 1 cut(s) 339
TaqI TCGA 9 cut(s) 214, 244, 291, 342, 505, 532, 714, 747, 917
TaqII GACCGA 1 cut(s) 130
TasI AATT 4 cut(s) 270, 585, 767, 1007
TfiI GAWTC 3 cut(s) 218, 931, 966
Tru1I TTAA 2 cut(s) 936, 1029
Tru9I TTAA 2 cut(s) 936, 1029
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 4 cut(s) 232, 262, 361, 371
TseI GCWGC 1 cut(s) 434
Tsp45I GTSAC 4 cut(s) 232, 262, 361, 371
TspDTI ATGAA 1 cut(s) 483
TspGWI ACGGA 3 cut(s) 733, 761, 1047
TspRI CASTG 1 cut(s) 448
Tth111I GACNNNGTC 2 cut(s) 260, 338
Vha464I CTTAAG 1 cut(s) 935
VpaK11BI GGWCC 1 cut(s) 755
XapI RAATTY 1 cut(s) 585
XmiI GTMKAC 2 cut(s) 342, 725
XmnI GAANNNNTTC 1 cut(s) 589
XspI CTAG 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.