Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Forward (+)

30475575 .. 30476681

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAAGCTGTGGACGCTTGTGGAAGAAGAGTGACTGTTGGTGACGTGGCCGGCAGAGCGGGGCTTAAGCTCCATGAGGCTCAGAACGCTTTGCAAGCTCTCGCTTCTGACACTCATGGCTTCTTGGAGGTCTCTGATGAAGGCGATGTACTGTATGTTTTCCCCAGAGATTATAGAGCAAAACTTGTAGGCAAATCGTTCAGAATGAGAGCTGAGCCGCTGCTTGAGAAGGCAAAGGCCGGGGCTGAGTATTTAGCAAGGGTTTCATTTGGAACTGCTCTGATTGCTTCCATTATTCTTGTTTTTACGGCAATTCTTGTTGCCCTTCTTGCCCTTAAAGGAAGTGGCGATAGTGATGACGATAGTGATGACGGCAAGAGCTCTTCAACTTCTTTTGACACTAGTTTCAGTTTTTCTTCGTGTCGGGATGAAGTGGTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.71

Weight (kDa)

4.86

Isoelectric Point (pI)

21.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	2 cut(s)	59, 218
AcoI	YGGCCR	1 cut(s)	48
AfaI	GTAC	1 cut(s)	150
AflII	CTTAAG	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	387
AhlI	ACTAGT	1 cut(s)	401
AjiI	CACGTC	1 cut(s)	46
AluBI	AGCT	5 cut(s)	8, 70, 98, 212, 381
AluI	AGCT	5 cut(s)	8, 70, 98, 212, 381
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	136
AoxI	GGCC	2 cut(s)	48, 237
ApeKI	GCWGC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	383
BarI	GAAGNNNNNNTAC	2 cut(s)	132, 164
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	207
BceAI	ACGGC	2 cut(s)	324, 388
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	136
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	1 cut(s)	402
BfrI	CTTAAG	1 cut(s)	65
BisI	GCNGC	2 cut(s)	218, 221
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	2 cut(s)	219, 222
Bme1390I	CCNGG	1 cut(s)	241
BmgBI	CACGTC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	241
Bpu1102I	GCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	433
BseMII	CTCAG	3 cut(s)	95, 204, 237
BseXI	GCAGC	1 cut(s)	207
BshFI	GGCC	2 cut(s)	50, 239
BsiHKAI	GWGCWC	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	51, 240
BsmAI	GTCTC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	50, 239
Bso31I	GGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp1720I	GCTNAGC	1 cut(s)	213
BspACI	CCGC	2 cut(s)	59, 218
BspANI	GGCC	2 cut(s)	50, 239
BspCNI	CTCAG	3 cut(s)	94, 205, 238
BspQI	GCTCTTC	1 cut(s)	388
BspTI	CTTAAG	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	136
BsrBI	CCGCTC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	37, 153
Bst6I	CTCTTC	2 cut(s)	22, 388
BstAFI	CTTAAG	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	52, 96
BstDEI	CTNAG	3 cut(s)	81, 213, 246
BstF5I	GGATG	1 cut(s)	433
BstMAI	GTCTC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 56, 86, 95, 284, 329
BstSCI	CCNGG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	50, 239
BtgZI	GCGATG	1 cut(s)	159
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	433
Cac8I	GCNNGC	2 cut(s)	52, 96
Cfr10I	RCCGGY	1 cut(s)	50
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	2 cut(s)	74, 116
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	3 cut(s)	81, 213, 246
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	22, 388
EarI	CTCTTC	2 cut(s)	22, 388
Ecl136II	GAGCTC	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	383
Eco31I	GGTCTC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	383
FaeI	CATG	2 cut(s)	77, 119
FaiI	YATR	4 cut(s)	75, 117, 156, 174
FatI	CATG	2 cut(s)	73, 115
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	218, 221
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	2 cut(s)	218, 221
FspBI	CTAG	1 cut(s)	402
GluI	GCNGC	2 cut(s)	218, 221
HaeIII	GGCC	2 cut(s)	50, 239
HapII	CCGG	2 cut(s)	51, 240
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	77, 119
HpaII	CCGG	2 cut(s)	51, 240
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	5 cut(s)	84, 109, 136, 203, 282
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	134, 223, 335
HpyCH4III	ACNGT	2 cut(s)	37, 153
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 56, 86, 95, 284, 329
HpyF3I	CTNAG	3 cut(s)	81, 213, 246
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	77, 119
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
LguI	GCTCTTC	1 cut(s)	388
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	3 cut(s)	64, 178, 253
Lsp1109I	GCAGC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	31, 41
MbiI	CCGCTC	1 cut(s)	59
MboII	GAAGA	4 cut(s)	36, 39, 375, 408
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	1 cut(s)	312
MnlI	CCTC	2 cut(s)	70, 121
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	2 cut(s)	66, 336
MspA1I	CMGCKG	1 cut(s)	220
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	2 cut(s)	51, 240
MspR9I	CCNGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	6 cut(s)	14, 56, 86, 95, 284, 329
NaeI	GCCGGC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	241
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	77, 119
NmuCI	GTSAC	2 cut(s)	31, 41
PciSI	GCTCTTC	1 cut(s)	388
PdiI	GCCGGC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	219, 222
Psp124BI	GAGCTC	1 cut(s)	383
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	383
SapI	GCTCTTC	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	66, 336
SatI	GCNGC	2 cut(s)	218, 221
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	7 cut(s)	10, 48, 72, 100, 132, 214, 383
SmlI	CTYRAG	2 cut(s)	65, 224
SmoI	CTYRAG	2 cut(s)	65, 224
SpeI	ACTAGT	1 cut(s)	401
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	2 cut(s)	59, 218
SspMI	CTAG	1 cut(s)	402
SstI	GAGCTC	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	2 cut(s)	37, 153
TaiI	ACGT	1 cut(s)	48
TasI	AATT	1 cut(s)	312
TatI	WGTACW	1 cut(s)	148
TauI	GCSGC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	66, 336
Tru9I	TTAA	2 cut(s)	66, 336
TseFI	GTSAC	2 cut(s)	31, 41
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	2 cut(s)	31, 41
TspDTI	ATGAA	3 cut(s)	153, 255, 444
Vha464I	CTTAAG	1 cut(s)	65
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.