Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

12360228 .. 12360566

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18751.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCCTCCATGGCTACCTGCCTCACTCTTCCCTCAAACCCTAGCCATCGCCTCGTTCCCAAACCTTCAATATTACCTTATCCTCGATCCCAGACCCCTCCTATTCTCCAAACCCGTCATTTCTCCTCTTTTACCTATAAGGTTCCGCAGCCTAGGGTTTTTGCGTCGGTTGTCAGAGCCAGCATTGCCACCGCTATCAGGCCCGGCGGTGCCATCGAGAGCGAAAACCTGCCTTCCGATGTGAGAAAGCGAGCTATGGAAGCTGTGGACGCTTGTGGACGAAGAGTGACCGTTGGTGACGTGGCCGGCAGAGCTGGGCTTAAGCTCATTGAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.04

Weight (kDa)

10.55

Isoelectric Point (pI)

67.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	26, 237
AccB1I	GGYRCC	1 cut(s)	209
AciI	CCGC	3 cut(s)	146, 192, 207
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	198
AflII	CTTAAG	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	69
AjiI	CACGTC	1 cut(s)	301
AluBI	AGCT	4 cut(s)	254, 263, 314, 325
AluI	AGCT	4 cut(s)	254, 263, 314, 325
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	3 cut(s)	3, 200, 303
ApeKI	GCWGC	1 cut(s)	148
AspA2I	CCTAGG	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	201
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	308
AvrII	CCTAGG	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	2 cut(s)	54, 221
BcnI	CCSGG	1 cut(s)	204
BfaI	CTAG	2 cut(s)	42, 153
BfrI	CTTAAG	1 cut(s)	320
BfuAI	ACCTGC	2 cut(s)	26, 237
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	1 cut(s)	149
BlnI	CCTAGG	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	144, 211
BmrFI	CCNGG	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	9, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse118I	RCCGGY	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	9, 152
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	314
BshFI	GGCC	3 cut(s)	5, 202, 305
BshNI	GGYRCC	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	204, 306
BslI	CCNNNNNNNGG	1 cut(s)	198
BsnI	GGCC	3 cut(s)	5, 202, 305
Bsp143I	GATC	1 cut(s)	86
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	146, 192, 207
BspANI	GGCC	3 cut(s)	5, 202, 305
BspLI	GGNNCC	2 cut(s)	144, 211
BspMI	ACCTGC	2 cut(s)	26, 237
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	209
BspTI	CTTAAG	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	9, 152
BssMI	GATC	1 cut(s)	86
BssT1I	CCWWGG	2 cut(s)	9, 152
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	2 cut(s)	33, 277
BstAFI	CTTAAG	1 cut(s)	320
BstC8I	GCNNGC	3 cut(s)	181, 252, 307
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	9
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 185, 260, 269, 311
BstSCI	CCNGG	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	160
BsuRI	GGCC	3 cut(s)	5, 202, 305
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	32
BtrI	CACGTC	1 cut(s)	301
BveI	ACCTGC	2 cut(s)	26, 237
Cac8I	GCNNGC	3 cut(s)	181, 252, 307
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	201
CseI	GACGC	2 cut(s)	153, 278
CviAII	CATG	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	2 cut(s)	33, 277
EarI	CTCTTC	2 cut(s)	33, 277
Eco130I	CCWWGG	2 cut(s)	9, 152
EcoT14I	CCWWGG	2 cut(s)	9, 152
ErhI	CCWWGG	2 cut(s)	9, 152
FaeI	CATG	1 cut(s)	13
FaiI	YATR	3 cut(s)	11, 138, 257
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	2 cut(s)	42, 153
GluI	GCNGC	1 cut(s)	149
GsaI	CCCAGC	1 cut(s)	318
HaeIII	GGCC	3 cut(s)	5, 202, 305
HapII	CCGG	2 cut(s)	204, 306
HgaI	GACGC	2 cut(s)	153, 278
Hin1II	CATG	1 cut(s)	13
HpaII	CCGG	2 cut(s)	204, 306
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	268, 278
Hpy188I	TCNGA	2 cut(s)	176, 238
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	2 cut(s)	268, 278
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	75, 243
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 185, 260, 269, 311
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	13
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	86
LpnPI	CCDG	8 cut(s)	31, 104, 184, 193, 217, 242, 300, 319
Lsp1109I	GCAGC	1 cut(s)	160
MaeI	CTAG	2 cut(s)	42, 153
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	286, 296
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	2 cut(s)	20, 294
MnlI	CCTC	8 cut(s)	16, 32, 43, 62, 93, 108, 136, 325
MroNI	GCCGGC	1 cut(s)	305
MseI	TTAA	1 cut(s)	321
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	2 cut(s)	204, 306
MspR9I	CCNGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	5 cut(s)	11, 185, 260, 269, 311
NaeI	GCCGGC	1 cut(s)	307
NciI	CCSGG	1 cut(s)	204
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	86
NgoMIV	GCCGGC	1 cut(s)	305
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	144, 211
NmuCI	GTSAC	2 cut(s)	286, 296
PdiI	GCCGGC	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	144, 211
PspPI	GGNCC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SsiI	CCGC	3 cut(s)	146, 192, 207
SspI	AATATT	1 cut(s)	72
SspMI	CTAG	2 cut(s)	42, 153
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	2 cut(s)	9, 152
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	85, 216
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseFI	GTSAC	2 cut(s)	286, 296
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	2 cut(s)	286, 296
Vha464I	CTTAAG	1 cut(s)	320
XmaJI	CCTAGG	1 cut(s)	152
XspI	CTAG	2 cut(s)	42, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.