Rorug03G0134600

protein At5g03900, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
11020191 .. 11020660
470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0134600.1

Sequence Viewer

Length: 348 bp
ATGGAAAATTGTATGCGACCAGCTTTGGGAGGAGAAGAGAATCCTCTACCAACGTTTCCACCCATCCAGAACCCCAACTCAAGCCCTAACCCGCCGCCACCTCCTCCTGAAAGACCGGCAGTCAATGTCAGAGGAAGAGGTCGTCTCCAATGGATGTCAGGCGCAGGAGGTCGTCTTGGAGCGCCTCCTCAAGCTGCTAACCTTGTTGGAAGCCAACTGCAGGGGGACGAGGGGCCGCTGATGTTGTGCGGTTGCAACAAGATTGAGATCACTTGCAACTGCTTGTCCGCCGGAGGATCACCCTGCTGCGGTGGCGGTTGTTGTTCCGGGTCTGTTTCCTTCAGTTGA

Protein Analysis

115

Amino Acids

11.67

Weight (kDa)

6.13

Isoelectric Point (pI)

72.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000516)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03900 AT5G03900
fragaria_vesca FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis pycom12g02390 pycom14g02210
rosa_chinensis RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 92, 95, 236, 249, 288, 309, 315
AclI AACGTT 1 cut(s) 53
AclWI GGATC 1 cut(s) 304
AcuI CTGAAG 1 cut(s) 325
AfiI CCNNNNNNNGG 3 cut(s) 26, 220, 308
AhdI GACNNNNNGTC 1 cut(s) 119
AluBI AGCT 2 cut(s) 23, 194
AluI AGCT 2 cut(s) 23, 194
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 304
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 194, 306
AspLEI GCGC 2 cut(s) 164, 184
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 291
BbvI GCAGC 2 cut(s) 181, 293
BccI CCATC 1 cut(s) 71
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 218
BfoI RGCGCY 1 cut(s) 185
BisI GCNGC 4 cut(s) 95, 195, 236, 307
BlsI GCNGC 4 cut(s) 96, 196, 237, 308
Bme1390I CCNGG 1 cut(s) 328
BmeRI GACNNNNNGTC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 328
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpuEI CTTGAG 2 cut(s) 64, 174
BpuMI CCSGG 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 266
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 220, 308
Bse118I RCCGGY 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 266
BseGI GGATG 2 cut(s) 63, 159
BseJI GATNNNNATC 1 cut(s) 266
BseLI CCNNNNNNNGG 3 cut(s) 26, 220, 308
BseRI GAGGAG 3 cut(s) 45, 93, 177
BseXI GCAGC 2 cut(s) 181, 293
BshFI GGCC 1 cut(s) 235
BsiSI CCGG 3 cut(s) 116, 291, 327
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 3 cut(s) 26, 220, 308
BsmAI GTCTC 1 cut(s) 149
BsmBI CGTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 235
Bsp143I GATC 2 cut(s) 267, 296
BspACI CCGC 7 cut(s) 92, 95, 236, 249, 288, 309, 315
BspANI GGCC 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 234
BspMAI CTGCAG 1 cut(s) 222
BspPI GGATC 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 115
BssAI RCCGGY 1 cut(s) 115
BssMI GATC 2 cut(s) 267, 296
Bst6I CTCTTC 2 cut(s) 30, 130
BstF5I GGATG 2 cut(s) 63, 159
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 2 cut(s) 164, 184
BstKTI GATC 2 cut(s) 270, 299
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 2 cut(s) 267, 296
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 181, 293
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 2 cut(s) 63, 159
CfoI GCGC 2 cut(s) 164, 184
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 233
CviJI RGCY 5 cut(s) 23, 84, 194, 213, 235
CviKI_1 RGCY 5 cut(s) 23, 84, 194, 213, 235
DpnI GATC 2 cut(s) 269, 298
DpnII GATC 2 cut(s) 267, 296
DriI GACNNNNNGTC 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 30, 130
Eam1105I GACNNNNNGTC 1 cut(s) 119
EarI CTCTTC 2 cut(s) 30, 130
EciI GGCGGA 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 325
Esp3I CGTCTC 1 cut(s) 149
FaiI YATR 1 cut(s) 14
FaqI GGGAC 1 cut(s) 239
FauI CCCGC 1 cut(s) 99
Fnu4HI GCNGC 4 cut(s) 95, 195, 236, 307
FokI GGATG 2 cut(s) 50, 166
Fsp4HI GCNGC 4 cut(s) 95, 195, 236, 307
GlaI GCGC 2 cut(s) 163, 183
GluI GCNGC 4 cut(s) 95, 195, 236, 307
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 235
HapII CCGG 3 cut(s) 116, 291, 327
HhaI GCGC 2 cut(s) 164, 184
Hin6I GCGC 2 cut(s) 162, 182
HinP1I GCGC 2 cut(s) 162, 182
HinfI GANTC 1 cut(s) 40
HpaII CCGG 3 cut(s) 116, 291, 327
HphI GGTGA 1 cut(s) 291
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 2 cut(s) 67, 107
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 3 cut(s) 220, 255, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
HpySE526I ACGT 1 cut(s) 53
HspAI GCGC 2 cut(s) 162, 182
Kzo9I GATC 2 cut(s) 267, 296
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 2 cut(s) 181, 293
MaeII ACGT 1 cut(s) 53
MalI GATC 2 cut(s) 269, 298
MboI GATC 2 cut(s) 267, 296
MboII GAAGA 2 cut(s) 47, 147
MluCI AATT 1 cut(s) 7
MmeI TCCRAC 1 cut(s) 187
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 3 cut(s) 116, 291, 327
MspR9I CCNGG 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 312
NciI CCSGG 1 cut(s) 328
NdeII GATC 2 cut(s) 267, 296
NlaIV GGNNCC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 4 cut(s) 96, 196, 237, 308
Psp1406I AACGTT 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 222
SatI GCNGC 4 cut(s) 95, 195, 236, 307
Sau3AI GATC 2 cut(s) 267, 296
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 328
SetI ASST 7 cut(s) 25, 56, 103, 142, 172, 196, 204
SfcI CTRYAG 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 79, 189
SmoI CTYRAG 2 cut(s) 79, 189
Sse9I AATT 1 cut(s) 7
SsiI CCGC 7 cut(s) 92, 95, 236, 249, 288, 309, 315
StyD4I CCNGG 1 cut(s) 326
TaiI ACGT 1 cut(s) 56
TasI AATT 1 cut(s) 7
TauI GCSGC 2 cut(s) 97, 238
TfiI GAWTC 1 cut(s) 40
TseI GCWGC 2 cut(s) 194, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.