Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

19382102 .. 19386961

Gene Structure 4860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG209500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTCATTGAGGTACTGGGATCCCAATTACTATAGGAAGCGACGAGGAAAACCACAAACAGATGATGGGGAGTTGAAATTTGGTGAATCTTTTTTCTCGTTTGTATTTGGCGATGGTGATCCAAATCAAGGAATTGAAGAAAAGAGATGGAAGATGATTGGGCACTACATATCCTCTAATGGTGGTGTTGTTGCAGCTGAAGAGCTTGCTCCATATCTTGATATAGAAACTTCAGTGGAAACTCCGACTGATGAAGCATACATCTTACCTGTTCTTTCACGGTATGAGGGTCAGCCTTTGATAGATGAAGAGCCATTCTGCTTCATGCAATCCCACCCATGCCTTTTCCAATTATTCCGTGAGTTTCATTGGCAATTGAATTTAACAATTAAGTTTTCTCTTTGCAGTAAAACTAGCAATGCAGAGAGAGCAATGGTCGTGGGACTTGGTGGACTTAATTTATTTGGGGTTATCATTCTGAGAAGCTTGTTAAAGGATCCTACAGTTGCCCAAGTTGGTTTTATCAAGTTTATTATAAGCATATTTCCTCTACTTCAGATTTATGCTGTTTCCTTCTTTGTAATTCCTCTGTTCCGGTGGTGTGTCTTGCTCAAGAAAAATGCTGACATAGAAAAAAGAAACCAAGCCAGACGGCAGTTTGCTCGAGACATTGAATTGCCTGATCTCTCACTAAGACAAAAGCTACTCAGTGCTCGGAACATGGCCCAAAGAACTGTCATAGGGCAGGACAGAATTGTTTATAGCTCTCGCAAGGATTTGGTTGAGCAAGAGTTGGATAGAACAGATAGACAAGTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

31.66

Weight (kDa)

8.28

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AclWI	GGATC	5 cut(s)	14, 27, 113, 491, 504
AcsI	RAATTY	2 cut(s)	77, 379
AcuI	CTGAAG	3 cut(s)	216, 219, 539
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	4 cut(s)	76, 137, 379, 674
AluBI	AGCT	5 cut(s)	197, 205, 486, 703, 765
AluI	AGCT	5 cut(s)	197, 205, 486, 703, 765
Alw21I	GWGCWC	1 cut(s)	715
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	5 cut(s)	14, 27, 113, 491, 504
Ama87I	CYCGRG	1 cut(s)	663
AoxI	GGCC	1 cut(s)	723
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	2 cut(s)	77, 379
AspS9I	GGNCC	1 cut(s)	724
AsuHPI	GGTGA	2 cut(s)	95, 128
AvaI	CYCGRG	1 cut(s)	663
BaeGI	GKGCMC	1 cut(s)	165
BamHI	GGATCC	2 cut(s)	19, 496
Bbv12I	GWGCWC	1 cut(s)	715
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	3 cut(s)	59, 107, 141
BceAI	ACGGC	1 cut(s)	668
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	2 cut(s)	31, 501
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	663
BmgT120I	GGNCC	1 cut(s)	724
BmiI	GGNNCC	2 cut(s)	21, 498
BmrI	ACTGGG	1 cut(s)	25
BmuI	ACTGGG	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	596
BsaBI	GATNNNNATC	2 cut(s)	117, 123
BsaWI	WCCGGW	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	20
Bse3DI	GCAATG	2 cut(s)	424, 438
Bse8I	GATNNNNATC	2 cut(s)	117, 123
BseJI	GATNNNNATC	2 cut(s)	117, 123
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	2 cut(s)	424, 438
BseMII	CTCAG	2 cut(s)	470, 721
BseNI	ACTGG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	725
BsiHKAI	GWGCWC	1 cut(s)	715
BsiHKCI	CYCGRG	1 cut(s)	663
BsiSI	CCGG	1 cut(s)	595
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	725
BsoBI	CYCGRG	1 cut(s)	663
Bsp1286I	GDGCHC	2 cut(s)	165, 715
Bsp143I	GATC	4 cut(s)	19, 118, 496, 682
BspANI	GGCC	1 cut(s)	725
BspCNI	CTCAG	2 cut(s)	471, 720
BspLI	GGNNCC	2 cut(s)	21, 498
BspPI	GGATC	5 cut(s)	14, 27, 113, 491, 504
BspQI	GCTCTTC	2 cut(s)	195, 303
BsrDI	GCAATG	2 cut(s)	424, 438
BsrI	ACTGG	1 cut(s)	20
BssMI	GATC	4 cut(s)	19, 118, 496, 682
Bst4CI	ACNGT	3 cut(s)	282, 505, 736
Bst6I	CTCTTC	2 cut(s)	195, 303
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	3 cut(s)	479, 692, 707
BstKTI	GATC	4 cut(s)	22, 121, 499, 685
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	4 cut(s)	19, 118, 496, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstSFI	CTRYAG	2 cut(s)	31, 501
BstSLI	GKGCMC	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	2 cut(s)	19, 496
BstYI	RGATCY	2 cut(s)	19, 496
BsuRI	GGCC	1 cut(s)	725
BtgZI	GCGATG	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	240, 715
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	724
Csp6I	GTAC	1 cut(s)	13
CspCI	CAANNNNNGTGG	2 cut(s)	420, 455
CviAII	CATG	3 cut(s)	325, 339, 721
CviJI	RGCY	9 cut(s)	197, 205, 295, 313, 486, 647, 703, 725, 765
CviKI_1	RGCY	9 cut(s)	197, 205, 295, 313, 486, 647, 703, 725, 765
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	3 cut(s)	479, 692, 707
DpnI	GATC	4 cut(s)	21, 120, 498, 684
DpnII	GATC	4 cut(s)	19, 118, 496, 682
Eam1104I	CTCTTC	2 cut(s)	195, 303
EarI	CTCTTC	2 cut(s)	195, 303
Eco57I	CTGAAG	3 cut(s)	216, 219, 539
Eco88I	CYCGRG	1 cut(s)	663
FaeI	CATG	3 cut(s)	328, 342, 724
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	3 cut(s)	324, 338, 720
Fnu4HI	GCNGC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	414
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	725
HapII	CCGG	1 cut(s)	595
Hin1II	CATG	3 cut(s)	328, 342, 724
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	595
HphI	GGTGA	2 cut(s)	95, 128
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	5 cut(s)	246, 480, 558, 717, 818
Hpy188III	TCNNGA	3 cut(s)	218, 613, 665
Hpy8I	GTNNAC	1 cut(s)	452
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	583
HpyCH4III	ACNGT	3 cut(s)	282, 505, 736
HpyCH4V	TGCA	4 cut(s)	194, 328, 405, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	3 cut(s)	479, 692, 707
Hsp92II	CATG	3 cut(s)	328, 342, 724
Kzo9I	GATC	4 cut(s)	19, 118, 496, 682
LguI	GCTCTTC	2 cut(s)	195, 303
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	5 cut(s)	282, 608, 661, 693, 731
Lsp1109I	GCAGC	1 cut(s)	206
MaeI	CTAG	1 cut(s)	414
MalI	GATC	4 cut(s)	21, 120, 498, 684
MboI	GATC	4 cut(s)	19, 118, 496, 682
MboII	GAAGA	4 cut(s)	149, 163, 212, 320
MfeI	CAATTG	1 cut(s)	374
MflI	RGATCY	2 cut(s)	19, 496
MhlI	GDGCHC	2 cut(s)	165, 715
MmeI	TCCRAC	2 cut(s)	269, 774
MnlI	CCTC	6 cut(s)	3, 38, 184, 280, 558, 597
MseI	TTAA	4 cut(s)	383, 390, 456, 491
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	595
MunI	CAATTG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	428
NdeII	GATC	4 cut(s)	19, 118, 496, 682
NlaIII	CATG	3 cut(s)	328, 342, 724
NlaIV	GGNNCC	2 cut(s)	21, 498
PaeR7I	CTCGAG	1 cut(s)	663
PciSI	GCTCTTC	2 cut(s)	195, 303
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	196
PsiI	TTATAA	1 cut(s)	536
PspN4I	GGNNCC	2 cut(s)	21, 498
PspPI	GGNCC	1 cut(s)	724
PsuI	RGATCY	2 cut(s)	19, 496
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SapI	GCTCTTC	2 cut(s)	195, 303
SaqAI	TTAA	4 cut(s)	383, 390, 456, 491
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	4 cut(s)	19, 118, 496, 682
Sau96I	GGNCC	1 cut(s)	724
SduI	GDGCHC	2 cut(s)	165, 715
SetI	ASST	7 cut(s)	14, 199, 207, 271, 488, 705, 767
SfcI	CTRYAG	2 cut(s)	31, 501
Sfr274I	CTCGAG	1 cut(s)	663
SlaI	CTCGAG	1 cut(s)	663
SmlI	CTYRAG	2 cut(s)	611, 663
SmoI	CTYRAG	2 cut(s)	611, 663
SspMI	CTAG	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	282, 505, 736
TaqI	TCGA	1 cut(s)	664
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	4 cut(s)	383, 390, 456, 491
Tru9I	TTAA	4 cut(s)	383, 390, 456, 491
TscAI	CASTG	2 cut(s)	240, 715
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	4 cut(s)	267, 313, 321, 356
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	2 cut(s)	240, 715
XapI	RAATTY	2 cut(s)	77, 379
XhoI	CTCGAG	1 cut(s)	663
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.