Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

17729454 .. 17731411

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG185700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTCGTGGGACTTGGTGGACTTAATTTATTTGGGGTTATCATTCTGAGAAGCTTGTTAAAGGATCCTACAGTTGCCCAAGTTGGTTTTATCAAGTTTATTATAAGCATATTTCCTCTACTTCAGATTTATGCTGTTTCCTTCTTTGTAATTCCTCTGTTCCGGTGGTGTGTCTTGCTCAAGAAAAATGCTGACATAGAAAAAAGAAACCAAGCCAGACGGCAGTTTGCTCGAGACATTGAATTGCCTGATCTCTCACTAAGACAAAAGCTACTCAGTGCTCGGAACATGGCCCAAAGAACTGTCATAGGGCAGGACAGAATTGTTTATAGCTCTCGCAAGGATTTGGTTGAGCAAGAGTTGGATAGAACAGATAGACAAGTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.93

Weight (kDa)

10.45

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AclWI	GGATC	2 cut(s)	59, 72
AcuI	CTGAAG	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	242
AluBI	AGCT	3 cut(s)	54, 271, 333
AluI	AGCT	3 cut(s)	54, 271, 333
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	59, 72
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	231
BamHI	GGATCC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BcoDI	GTCTC	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	38, 289
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	283
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	64, 250
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	39, 288
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	59, 72
BssMI	GATC	2 cut(s)	64, 250
Bst4CI	ACNGT	2 cut(s)	73, 304
BstDEI	CTNAG	3 cut(s)	47, 260, 275
BstKTI	GATC	2 cut(s)	67, 253
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	2 cut(s)	64, 250
BstSFI	CTRYAG	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	292
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	5 cut(s)	54, 215, 271, 293, 333
CviKI_1	RGCY	5 cut(s)	54, 215, 271, 293, 333
DdeI	CTNAG	3 cut(s)	47, 260, 275
DpnI	GATC	2 cut(s)	66, 252
DpnII	GATC	2 cut(s)	64, 250
Eco57I	CTGAAG	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	231
FaeI	CATG	1 cut(s)	292
FaiI	YATR	7 cut(s)	104, 110, 132, 197, 290, 308, 330
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	163
Hin1II	CATG	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	52
HpaII	CCGG	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	4 cut(s)	48, 126, 285, 386
Hpy188III	TCNNGA	2 cut(s)	181, 233
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	73, 304
HpyF3I	CTNAG	3 cut(s)	47, 260, 275
Hsp92II	CATG	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	64, 250
LpnPI	CCDG	4 cut(s)	176, 229, 261, 299
MalI	GATC	2 cut(s)	66, 252
MboI	GATC	2 cut(s)	64, 250
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	4 cut(s)	25, 150, 242, 321
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	2 cut(s)	126, 165
MseI	TTAA	2 cut(s)	24, 59
MspI	CCGG	1 cut(s)	163
NdeII	GATC	2 cut(s)	64, 250
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	66
PaeR7I	CTCGAG	1 cut(s)	231
PsiI	TTATAA	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	24, 59
Sau3AI	GATC	2 cut(s)	64, 250
Sau96I	GGNCC	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	3 cut(s)	56, 273, 335
SfcI	CTRYAG	1 cut(s)	69
Sfr274I	CTCGAG	1 cut(s)	231
SlaI	CTCGAG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	179, 231
SmoI	CTYRAG	2 cut(s)	179, 231
Sse9I	AATT	4 cut(s)	25, 150, 242, 321
TaaI	ACNGT	2 cut(s)	73, 304
TaqI	TCGA	1 cut(s)	232
TasI	AATT	4 cut(s)	25, 150, 242, 321
Tru1I	TTAA	2 cut(s)	24, 59
Tru9I	TTAA	2 cut(s)	24, 59
TscAI	CASTG	1 cut(s)	283
TspRI	CASTG	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.