RLG00000022503

protein At5g03900, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
2215295 .. 2217342
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022503

Sequence Viewer

Length: 594 bp
ATGGACGTTGTTGACGCATGCGGAGGGAGAGTGACGATTGGTGACGTCTCCAGCAGAGCGGGGCTCAAGCTCAATGAGGCTCAGAACGCTTTGCAGGCTCTTGCTGCCGACACTGAGGGCTTCTTGGAGGTCTCGGATGAAGGCGATGTGCTTTATGTTTTCCCCAAAGATTATCGAGCAAAGCTTCTTGCCAAATCGTTTCGATTGAGAATTGAGCCTCTGCTGGAGAAAGCAAAGGCTGGGACCAAGTATGTAGTGAGGGTTTCATTTGGAACTGCCCTCATTGCCTCCATTGTTCTTGTTTATACTATAATCATTGTTGCCCTTCTTCCAGTAGGAGCGAGGATGACAATCGTGGACGACGTGGAAGATCATATGATTCGGGTTATGGGTGACTATGATTATGTATTTTCTGAGAATGGTCTTGTGGCTCACAAAGATGTGAAGCTCATTTGCACCCAGGATCCACAACAGTGTTGTCATGTTGTTCATGAAGAAGATGATGACCAAGGTGAGGTTTACATTGATGAAGCTGGCATCCTTAACGAAGTTGATTTAGATGAGGAAGATCTACTTACATCAGTTAGCAACTAA

Protein Analysis

198

Amino Acids

21.62

Weight (kDa)

4.37

Isoelectric Point (pI)

27.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000516)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03900 AT5G03900
fragaria_vesca FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis pycom12g02390 pycom14g02210
rosa_chinensis RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 48
AccBSI CCGCTC 1 cut(s) 59
AciI CCGC 2 cut(s) 21, 59
AclWI GGATC 2 cut(s) 458, 471
AcyI GRCGYC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 514
AjiI CACGTC 1 cut(s) 364
AjnI CCWGG 1 cut(s) 459
AleI CACNNNNGTG 1 cut(s) 472
AluBI AGCT 4 cut(s) 70, 184, 448, 533
AluI AGCT 4 cut(s) 70, 184, 448, 533
Alw26I GTCTC 2 cut(s) 52, 136
AlwI GGATC 2 cut(s) 458, 471
ApeKI GCWGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 243
AsuHPI GGTGA 3 cut(s) 53, 404, 524
AvaII GGWCC 1 cut(s) 243
BamHI GGATCC 1 cut(s) 463
BanII GRGCYC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 461
BcoDI GTCTC 2 cut(s) 52, 136
BglII AGATCT 1 cut(s) 568
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 461
Bme18I GGWCC 1 cut(s) 243
BmgBI CACGTC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 244, 465
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 1 cut(s) 546
BplI GAGNNNNNCTC 2 cut(s) 48, 80
BpmI CTGGAG 2 cut(s) 34, 245
BpuEI CTTGAG 1 cut(s) 50
BsaBI GATNNNNATC 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 459, 508
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 1 cut(s) 514
Bse1I ACTGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 282
Bse8I GATNNNNATC 1 cut(s) 350
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 2 cut(s) 459, 508
BseGI GGATG 3 cut(s) 142, 351, 537
BseJI GATNNNNATC 1 cut(s) 350
BseLI CCNNNNNNNGG 1 cut(s) 514
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 3 cut(s) 95, 105, 405
BseNI ACTGG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 91
BseYI CCCAGC 1 cut(s) 239
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 514
BsmAI GTCTC 2 cut(s) 52, 136
BsmBI CGTCTC 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 256
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 3 cut(s) 370, 463, 568
BspACI CCGC 2 cut(s) 21, 59
BspCNI CTCAG 3 cut(s) 94, 106, 406
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 244, 465
BspPI GGATC 2 cut(s) 458, 471
BspTNI GGTCTC 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 1 cut(s) 332
BssECI CCNNGG 2 cut(s) 459, 508
BssMI GATC 3 cut(s) 370, 463, 568
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 508
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 1 cut(s) 474
BstACI GRCGYC 1 cut(s) 45
BstC8I GCNNGC 3 cut(s) 19, 96, 535
BstDEI CTNAG 3 cut(s) 81, 114, 414
BstF5I GGATG 3 cut(s) 142, 351, 537
BstKTI GATC 3 cut(s) 373, 466, 571
BstMAI GTCTC 2 cut(s) 52, 136
BstMBI GATC 3 cut(s) 370, 463, 568
BstMWI GCNNNNNNNGC 4 cut(s) 86, 95, 104, 284
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 459
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 2 cut(s) 463, 568
BstYI RGATCY 2 cut(s) 463, 568
BtgZI GCGATG 1 cut(s) 159
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 3 cut(s) 142, 351, 537
BtsIMutI CAGTG 2 cut(s) 111, 479
Cac8I GCNNGC 3 cut(s) 19, 96, 535
CciI TCATGA 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 243
CseI GACGC 1 cut(s) 23
CviAII CATG 3 cut(s) 18, 482, 491
DdeI CTNAG 3 cut(s) 81, 114, 414
DpnI GATC 3 cut(s) 372, 465, 570
DpnII GATC 3 cut(s) 370, 463, 568
Eco130I CCWWGG 1 cut(s) 508
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 508
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 3 cut(s) 21, 485, 494
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 1 cut(s) 256
FatI CATG 3 cut(s) 17, 481, 490
FauI CCCGC 1 cut(s) 52
FauNDI CATATG 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 3 cut(s) 149, 358, 524
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 243
GsuI CTGGAG 2 cut(s) 34, 245
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 3 cut(s) 21, 485, 494
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 1 cut(s) 379
HphI GGTGA 3 cut(s) 53, 404, 524
Hpy166II GTNNAC 3 cut(s) 13, 358, 520
Hpy188I TCNGA 3 cut(s) 84, 136, 415
Hpy188III TCNNGA 1 cut(s) 491
Hpy8I GTNNAC 3 cut(s) 13, 358, 520
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 2 cut(s) 134, 335
HpyCH4III ACNGT 1 cut(s) 474
HpyCH4IV ACGT 3 cut(s) 6, 45, 363
HpyCH4V TGCA 2 cut(s) 94, 456
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 95, 104, 284
HpyF3I CTNAG 3 cut(s) 81, 114, 414
HpySE526I ACGT 3 cut(s) 6, 45, 363
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 3 cut(s) 21, 485, 494
Kzo9I GATC 3 cut(s) 370, 463, 568
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 8 cut(s) 64, 80, 209, 225, 345, 446, 473, 519
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 546
MaeII ACGT 3 cut(s) 6, 45, 363
MaeIII GTNAC 3 cut(s) 31, 41, 392
MalI GATC 3 cut(s) 372, 465, 570
MbiI CCGCTC 1 cut(s) 59
MboI GATC 3 cut(s) 370, 463, 568
MboII GAAGA 5 cut(s) 320, 380, 506, 509, 578
MflI RGATCY 2 cut(s) 463, 568
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 210
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 2 cut(s) 438, 472
MspR9I CCNGG 1 cut(s) 461
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 4 cut(s) 86, 95, 104, 284
NdeI CATATG 1 cut(s) 375
NdeII GATC 3 cut(s) 370, 463, 568
NlaIII CATG 3 cut(s) 21, 485, 494
NlaIV GGNNCC 2 cut(s) 244, 465
NmuCI GTSAC 3 cut(s) 31, 41, 392
NspI RCATGY 1 cut(s) 21
OliI CACNNNNGTG 1 cut(s) 472
PaeI GCATGC 1 cut(s) 21
PagI TCATGA 1 cut(s) 490
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 459
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 244, 465
PspPI GGNCC 1 cut(s) 243
PsuI RGATCY 2 cut(s) 463, 568
RseI CAYNNNNRTG 2 cut(s) 438, 472
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 3 cut(s) 370, 463, 568
Sau96I GGNCC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 1 cut(s) 66
SfaNI GCATC 1 cut(s) 546
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 2 cut(s) 438, 472
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SphI GCATGC 1 cut(s) 21
Sse9I AATT 1 cut(s) 210
SsiI CCGC 2 cut(s) 21, 59
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 1 cut(s) 474
TaiI ACGT 3 cut(s) 9, 48, 366
TaqI TCGA 2 cut(s) 175, 202
TasI AATT 1 cut(s) 210
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 2 cut(s) 118, 479
TseFI GTSAC 3 cut(s) 31, 41, 392
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 3 cut(s) 31, 41, 392
TspDTI ATGAA 5 cut(s) 153, 255, 479, 507, 543
TspRI CASTG 2 cut(s) 118, 479
VpaK11BI GGWCC 1 cut(s) 243
XceI RCATGY 1 cut(s) 21
ZraI GACGTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.