Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

82179347 .. 82182166

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG590800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGACGTTGTTGACGCCTGCGGAGGGAGAGTGATGATTGGTGACGTCTCCAGCAGAGCTGGGCTCAAGCTCAATGAGGCTCAGAACGCTTTGCAGGCTCTCGCTGCCGACACTGAGGGCTTCTTATGGTCTCAACAGGTCTCTGATGAAGGCGATGTGCTTTATGTTTTCCCCAAAGATTATCGAGCAAAGCTTCTTGCCAAATTGTTTCGATTGAGAATTGAGCCTCTGCTGGAGAAAGCAAAGGCCGGGACCAAGTATGTAGTGAGGGTTTCATTTGGAACTGCCCTCATTGCCTCCGTTGTTCTTGTTTATACTGCAATCATTGTTGCCCTTTCTTCCAGTAGGAGCGAGGATGACAATCGTGGACGACGTGGAAGATCATATGATTCAGGTTGCTTTGGGGTGCTCAATTGGTGCAAAGGAAATAAGAATTTGGAACCTTCCAGCCAAGCCCAAGGGATTCCTACTAACAATGATGGAGTGACATGCTTGACCTGGCTTGGGGTATCTAGGTACCTAGCAACAGGTTGTGCGGATGGGAAGGTCCGATTATGGGATAGTCTCTCTGGTGATTGTGTAAGAACCTTCAAGAACCCATTCAGTCTCTCTCTGTATCTGCCAACAAGGACTTCCTTGTTTCAGTATCTACTGATGGAACCGCTCGAGTTGTTGAGATTGAAGAATATAAGCAAGCAATATACCCTTCATAGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

26.43

Weight (kDa)

9.0

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	151 - 199	6.1e-06	THOC3 beta-propeller domain
WD40	PF00400	158 - 187	1e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	48
Acc65I	GGTACC	1 cut(s)	516
AccB1I	GGYRCC	1 cut(s)	516
AccBSI	CCGCTC	1 cut(s)	664
AciI	CCGC	3 cut(s)	21, 536, 662
AcsI	RAATTY	1 cut(s)	433
AcyI	GRCGYC	2 cut(s)	15, 45
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	3 cut(s)	24, 504, 556
AgsI	TTSAA	2 cut(s)	592, 682
AjiI	CACGTC	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	497
AjuI	GAANNNNNNNTTGG	2 cut(s)	616, 648
AluBI	AGCT	3 cut(s)	59, 70, 193
AluI	AGCT	3 cut(s)	59, 70, 193
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	5 cut(s)	52, 135, 145, 569, 611
Ama87I	CYCGRG	1 cut(s)	665
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	433
Asp700I	GAANNNNTTC	1 cut(s)	599
Asp718I	GGTACC	1 cut(s)	516
AspS9I	GGNCC	2 cut(s)	252, 547
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	53, 584
AvaI	CYCGRG	1 cut(s)	665
AvaII	GGWCC	2 cut(s)	252, 547
BanI	GGYRCC	1 cut(s)	516
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	3 cut(s)	473, 533, 649
BciT130I	CCWGG	1 cut(s)	499
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	5 cut(s)	52, 135, 145, 569, 611
BfaI	CTAG	2 cut(s)	513, 521
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	2 cut(s)	250, 499
Bme18I	GGWCC	2 cut(s)	252, 547
BmeT110I	CYCGRG	1 cut(s)	665
BmgBI	CACGTC	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	252, 547
BmiI	GGNNCC	4 cut(s)	253, 441, 518, 660
BmrFI	CCNGG	2 cut(s)	250, 499
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BpmI	CTGGAG	2 cut(s)	34, 254
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	360
BsaHI	GRCGYC	2 cut(s)	15, 45
BsaI	GGTCTC	2 cut(s)	135, 145
BsaJI	CCNNGG	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 504, 556
Bse1I	ACTGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	499
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	2 cut(s)	361, 544
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	3 cut(s)	24, 504, 556
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	95, 105
BseNI	ACTGG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	91
BseYI	CCCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	3 cut(s)	24, 504, 556
BsmAI	GTCTC	5 cut(s)	52, 135, 145, 569, 611
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	248
Bso31I	GGTCTC	2 cut(s)	135, 145
BsoBI	CYCGRG	1 cut(s)	665
Bsp1286I	GDGCHC	2 cut(s)	66, 411
Bsp143I	GATC	1 cut(s)	380
BspACI	CCGC	3 cut(s)	21, 536, 662
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	2 cut(s)	94, 106
BspLI	GGNNCC	4 cut(s)	253, 441, 518, 660
BspT107I	GGYRCC	1 cut(s)	516
BspTNI	GGTCTC	2 cut(s)	135, 145
BsrBI	CCGCTC	1 cut(s)	664
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	1 cut(s)	380
BssNI	GRCGYC	2 cut(s)	15, 45
BssT1I	CCWWGG	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	499
BstACI	GRCGYC	2 cut(s)	15, 45
BstC8I	GCNNGC	3 cut(s)	19, 96, 695
BstDEI	CTNAG	2 cut(s)	81, 114
BstF5I	GGATG	2 cut(s)	361, 544
BstKTI	GATC	1 cut(s)	383
BstMAI	GTCTC	5 cut(s)	52, 135, 145, 569, 611
BstMBI	GATC	1 cut(s)	380
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 293
BstNI	CCWGG	1 cut(s)	499
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	2 cut(s)	248, 497
BstV1I	GCAGC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	248
BtgZI	GCGATG	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	374
BtsCI	GGATG	2 cut(s)	361, 544
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	19, 96, 695
Cfr13I	GGNCC	2 cut(s)	252, 547
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	1 cut(s)	489
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	2 cut(s)	81, 114
DpnI	GATC	1 cut(s)	382
DpnII	GATC	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	2 cut(s)	135, 145
Eco47I	GGWCC	2 cut(s)	252, 547
Eco88I	CYCGRG	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	1 cut(s)	492
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	1 cut(s)	488
FauNDI	CATATG	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	2 cut(s)	368, 551
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	2 cut(s)	513, 521
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	2 cut(s)	34, 254
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	23
Hin1I	GRCGYC	2 cut(s)	15, 45
Hin1II	CATG	1 cut(s)	492
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	2 cut(s)	389, 463
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	53, 584
Hpy166II	GTNNAC	2 cut(s)	13, 368
Hpy188I	TCNGA	3 cut(s)	84, 145, 551
Hpy188III	TCNNGA	1 cut(s)	592
Hpy8I	GTNNAC	2 cut(s)	13, 368
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	5 cut(s)	143, 453, 538, 598, 716
HpyCH4IV	ACGT	3 cut(s)	6, 45, 373
HpyCH4V	TGCA	3 cut(s)	94, 320, 420
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 293
HpyF3I	CTNAG	2 cut(s)	81, 114
HpySE526I	ACGT	3 cut(s)	6, 45, 373
Hsp92I	GRCGYC	2 cut(s)	15, 45
Hsp92II	CATG	1 cut(s)	492
KpnI	GGTACC	1 cut(s)	520
Kzo9I	GATC	1 cut(s)	380
LmnI	GCTCC	1 cut(s)	348
Lsp1109I	GCAGC	1 cut(s)	91
MaeI	CTAG	2 cut(s)	513, 521
MaeII	ACGT	3 cut(s)	6, 45, 373
MaeIII	GTNAC	2 cut(s)	41, 484
MalI	GATC	1 cut(s)	382
MbiI	CCGCTC	1 cut(s)	664
MboI	GATC	1 cut(s)	380
MboII	GAAGA	3 cut(s)	330, 390, 694
MfeI	CAATTG	1 cut(s)	412
MhlI	GDGCHC	2 cut(s)	66, 411
MluCI	AATT	4 cut(s)	203, 219, 412, 433
MnlI	CCTC	8 cut(s)	17, 70, 109, 237, 261, 299, 307, 346
MroXI	GAANNNNTTC	1 cut(s)	599
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	2 cut(s)	250, 499
MunI	CAATTG	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	499
MwoI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 293
NciI	CCSGG	1 cut(s)	250
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	1 cut(s)	380
NlaIII	CATG	1 cut(s)	492
NlaIV	GGNNCC	4 cut(s)	253, 441, 518, 660
NmuCI	GTSAC	2 cut(s)	41, 484
NspI	RCATGY	1 cut(s)	492
PaeR7I	CTCGAG	1 cut(s)	665
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	2 cut(s)	389, 463
PkrI	GCNGC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	497
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	497
PspN4I	GGNNCC	4 cut(s)	253, 441, 518, 660
PspPI	GGNCC	2 cut(s)	252, 547
PspXI	VCTCGAGB	1 cut(s)	665
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	380
Sau96I	GGNCC	2 cut(s)	252, 547
ScrFI	CCNGG	2 cut(s)	250, 499
SduI	GDGCHC	2 cut(s)	66, 411
Sfr274I	CTCGAG	1 cut(s)	665
SinI	GGWCC	2 cut(s)	252, 547
SlaI	CTCGAG	1 cut(s)	665
SmlI	CTYRAG	2 cut(s)	65, 665
SmoI	CTYRAG	2 cut(s)	65, 665
Sse9I	AATT	4 cut(s)	203, 219, 412, 433
SsiI	CCGC	3 cut(s)	21, 536, 662
SspMI	CTAG	2 cut(s)	513, 521
StyD4I	CCNGG	2 cut(s)	248, 497
StyI	CCWWGG	1 cut(s)	457
TaiI	ACGT	3 cut(s)	9, 48, 376
TaqI	TCGA	3 cut(s)	184, 211, 666
TasI	AATT	4 cut(s)	203, 219, 412, 433
TfiI	GAWTC	2 cut(s)	389, 463
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	2 cut(s)	41, 484
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	2 cut(s)	41, 484
TspDTI	ATGAA	3 cut(s)	162, 264, 698
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	2 cut(s)	252, 547
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	492
XhoI	CTCGAG	1 cut(s)	665
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	2 cut(s)	513, 521
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.