Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00297

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

11453 .. 16283

Gene Structure 4831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAGAGCTGAGCCGCTGCTTGAGAAGGCAAAGGCCGGGGCTGAGTATTTAGCAAGGGTTTCATTTGGAACTGCTCTGATTGCTTCCATTATTCTTGTTTTTACCGCAATTCTTCTTGCCCTTCTTGCCCTTAAAGGAAGGTACTGGGATCCCAATTACTATAGGAAGCGACGAGGAAAACCACAAACAGATGATGGGGTGTTGAAATTTGTTGAATCTTTTTTCTCGTTTGTATTTGGCGATGGTGATCCAAATCAAGGAATTGAAGCAAAGAGATGGAAGATGCTGAAGAGCTATGTTGATATAGAAACTTCAGTGGAAACTCCGACTGATGAAGCATACATCTTACCTGTTCTTTCACGGTATGAGGGTCAGCCTTTAATAGATGAAGAGATTTATGCTGTTTCCTTCTTTGTAATTCCTCTGTTCCGGTGGTTTGTCTTGCTCAAGAAAAATGCTGACATAGAAAAAAGAAGCCAAGCCAGACGGCAGTTTGCTCGAGACATTGAATTGCCTGATCTCTCACTAAGACGAAAGCTACTCAGTGCTCGGAACATGGCCCAAAGAACTGTCCTAGGGCAGGACAGAATTGTTTATAGCTCTCGCAAGGATTTGGTTGAGCAAGAGTTGGATAGAGGGTTTCAACAGATAGACAAGTCAGATGAAACCAGGACAAACAAGATTGGCAGGATCTCACTTGGATTTAAGAGCATAAGGATTAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

27.94

Weight (kDa)

9.47

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	14, 105
AclWI	GGATC	4 cut(s)	143, 156, 242, 698
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	2 cut(s)	297, 308
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	257, 580
AgsI	TTSAA	5 cut(s)	205, 215, 266, 509, 644
AjnI	CCWGG	1 cut(s)	668
AluBI	AGCT	4 cut(s)	8, 294, 538, 600
AluI	AGCT	4 cut(s)	8, 294, 538, 600
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	495
AlwI	GGATC	4 cut(s)	143, 156, 242, 698
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	2 cut(s)	33, 558
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	206
AseI	ATTAAT	1 cut(s)	720
AspA2I	CCTAGG	1 cut(s)	574
AspS9I	GGNCC	1 cut(s)	559
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	498
AvrII	CCTAGG	1 cut(s)	574
BamHI	GGATCC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	3 cut(s)	188, 236, 270
BceAI	ACGGC	1 cut(s)	503
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	1 cut(s)	670
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	1 cut(s)	160
BisI	GCNGC	2 cut(s)	14, 17
BlnI	CCTAGG	1 cut(s)	574
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	2 cut(s)	15, 18
Bme1390I	CCNGG	2 cut(s)	37, 670
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	559
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	2 cut(s)	37, 670
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	154
Bpu1102I	GCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	2 cut(s)	41, 431
BpuMI	CCSGG	1 cut(s)	37
BsaBI	GATNNNNATC	2 cut(s)	246, 252
BsaJI	CCNNGG	2 cut(s)	36, 574
BsaWI	WCCGGW	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 580
Bse1I	ACTGG	1 cut(s)	149
Bse8I	GATNNNNATC	2 cut(s)	246, 252
BseBI	CCWGG	1 cut(s)	670
BseDI	CCNNGG	2 cut(s)	36, 574
BseJI	GATNNNNATC	2 cut(s)	246, 252
BseLI	CCNNNNNNNGG	2 cut(s)	257, 580
BseMII	CTCAG	2 cut(s)	33, 556
BseNI	ACTGG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	3
BshFI	GGCC	2 cut(s)	35, 560
BsiHKAI	GWGCWC	1 cut(s)	550
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	36, 430
BslI	CCNNNNNNNGG	2 cut(s)	257, 580
BsmAI	GTCTC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	35, 560
BsoBI	CYCGRG	1 cut(s)	498
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	4 cut(s)	148, 247, 517, 690
Bsp1720I	GCTNAGC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	14, 105
BspANI	GGCC	2 cut(s)	35, 560
BspCNI	CTCAG	2 cut(s)	34, 555
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	4 cut(s)	143, 156, 242, 698
BspQI	GCTCTTC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	36, 574
BssMI	GATC	4 cut(s)	148, 247, 517, 690
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	670
Bst4CI	ACNGT	2 cut(s)	363, 571
Bst6I	CTCTTC	2 cut(s)	284, 384
BstDEI	CTNAG	4 cut(s)	9, 42, 527, 542
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstKTI	GATC	4 cut(s)	151, 250, 520, 693
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	4 cut(s)	148, 247, 517, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 125
BstNI	CCWGG	1 cut(s)	670
BstSCI	CCNGG	2 cut(s)	35, 668
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	3
BstX2I	RGATCY	2 cut(s)	148, 690
BstYI	RGATCY	2 cut(s)	148, 690
BsuRI	GGCC	2 cut(s)	35, 560
BtgZI	GCGATG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	321, 550
Cfr13I	GGNCC	1 cut(s)	559
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	1 cut(s)	556
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	4 cut(s)	9, 42, 527, 542
DpnI	GATC	4 cut(s)	150, 249, 519, 692
DpnII	GATC	4 cut(s)	148, 247, 517, 690
Eam1104I	CTCTTC	2 cut(s)	284, 384
EarI	CTCTTC	2 cut(s)	284, 384
Eco130I	CCWWGG	1 cut(s)	574
Eco57I	CTGAAG	2 cut(s)	297, 308
Eco88I	CYCGRG	1 cut(s)	498
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	668
EcoT14I	CCWWGG	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	1 cut(s)	559
FatI	CATG	1 cut(s)	555
Fnu4HI	GCNGC	2 cut(s)	14, 17
Fsp4HI	GCNGC	2 cut(s)	14, 17
FspBI	CTAG	1 cut(s)	575
GluI	GCNGC	2 cut(s)	14, 17
HaeIII	GGCC	2 cut(s)	35, 560
HapII	CCGG	2 cut(s)	36, 430
Hin1II	CATG	1 cut(s)	559
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	2 cut(s)	36, 430
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	4 cut(s)	78, 327, 552, 661
Hpy188III	TCNNGA	2 cut(s)	448, 500
Hpy99I	CGWCG	1 cut(s)	174
HpyAV	CCTTC	4 cut(s)	19, 131, 132, 418
HpyCH4III	ACNGT	2 cut(s)	363, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 125
HpyF3I	CTNAG	4 cut(s)	9, 42, 527, 542
Hsp92II	CATG	1 cut(s)	559
Kzo9I	GATC	4 cut(s)	148, 247, 517, 690
LguI	GCTCTTC	1 cut(s)	284
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	1 cut(s)	575
MalI	GATC	4 cut(s)	150, 249, 519, 692
MboI	GATC	4 cut(s)	148, 247, 517, 690
MboII	GAAGA	4 cut(s)	104, 292, 301, 401
MflI	RGATCY	2 cut(s)	148, 690
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	7 cut(s)	108, 154, 206, 261, 417, 509, 588
MmeI	TCCRAC	2 cut(s)	350, 609
MnlI	CCTC	4 cut(s)	167, 361, 432, 629
MseI	TTAA	4 cut(s)	132, 380, 705, 720
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	2 cut(s)	36, 430
MspR9I	CCNGG	2 cut(s)	37, 670
MvaI	CCWGG	1 cut(s)	670
MwoI	GCNNNNNNNGC	2 cut(s)	80, 125
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	4 cut(s)	148, 247, 517, 690
NlaIII	CATG	1 cut(s)	559
NlaIV	GGNNCC	1 cut(s)	150
PaeR7I	CTCGAG	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	15, 18
PshBI	ATTAAT	1 cut(s)	720
Psp6I	CCWGG	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	668
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	559
PsuI	RGATCY	2 cut(s)	148, 690
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	4 cut(s)	132, 380, 705, 720
SatI	GCNGC	2 cut(s)	14, 17
Sau3AI	GATC	4 cut(s)	148, 247, 517, 690
Sau96I	GGNCC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	37, 670
SduI	GDGCHC	1 cut(s)	550
SetI	ASST	6 cut(s)	10, 143, 296, 352, 540, 602
SfaNI	GCATC	1 cut(s)	273
SfcI	CTRYAG	1 cut(s)	160
Sfr274I	CTCGAG	1 cut(s)	498
SlaI	CTCGAG	1 cut(s)	498
SmlI	CTYRAG	3 cut(s)	20, 446, 498
SmoI	CTYRAG	3 cut(s)	20, 446, 498
Sse9I	AATT	7 cut(s)	108, 154, 206, 261, 417, 509, 588
SsiI	CCGC	2 cut(s)	14, 105
SspMI	CTAG	1 cut(s)	575
StyD4I	CCNGG	2 cut(s)	35, 668
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	2 cut(s)	363, 571
TaqI	TCGA	1 cut(s)	499
TasI	AATT	7 cut(s)	108, 154, 206, 261, 417, 509, 588
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	4 cut(s)	132, 380, 705, 720
Tru9I	TTAA	4 cut(s)	132, 380, 705, 720
TscAI	CASTG	2 cut(s)	321, 550
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	4 cut(s)	51, 348, 402, 678
TspRI	CASTG	2 cut(s)	321, 550
VspI	ATTAAT	1 cut(s)	720
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	498
XmaJI	CCTAGG	1 cut(s)	574
XspI	CTAG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.