Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000140.1

Orthogroup ID

OG0000516

Physical Location & Seq

Genomic Coordinates Reverse (-)

1105 .. 5660

Gene Structure 4556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000140.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgaactatcagtgcctcctcacttcaaccatatctctctgttctacacggccctcgcctcatatccaaatcctcactctttcggtctttccctactgcctccacattcctctctcccaaacccccattttccctgggttctcttccaaggttcgagattctaggtcagtgacggtcgttcgagccagcctcgacgcagtcacgtggattaggcatggcggagctatcgagagcgataagctaccatccgatgtgaggaagagcaccatggacgttgtcgacgcctgcggagggagagtgacgattggtgacgtctccagcagaactgggctcaagctcaatgaggctcagaacgctttgcaggctctcgctgccgaaactgagggcttcttggaggtctcggatgaaggcgatgtgctttatgttttccccaaagattatcgagcaaagcttcttgccaaatctttgtgcttgggaattgacactgagattatgctttttgataggccgggaccaagtcatgttgttcatgaagaagacgatgaccaaggtgaggtttacattgatgaagctgacatccttaacgaagttgatttcgacgaggaaggctgccgacatgctgcacgccatgctgccgagcccttcacacgacagttccctacaattgatctccatcagacgacgctgtacctccatatcagacgacaatttttagccgtcgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

26.77

Weight (kDa)

5.04

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03900 AT5G03900
fragaria_vesca	FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18720 FvH4_6g18750 FvH4_6g18751 FvH4_6g18760
malus_domestica	MD12G1036400.v1.1 MD14G1023200.v1.1
prunus_persica	Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1 Prupe.7G109900_v2.0.a1
pyrus_communis	pycom12g02390 pycom14g02210
rosa_chinensis	RchiOBHm_Chr3g0473691 RchiOBHm_Chr3g0473711 RchiOBHm_Chr3g0473721 RchiOBHm_Chr3g0473731 RchiOBHm_Chr3g0473761 RchiOBHm_Chr6g0257921 RchiOBHm_Chr7g0229131
rosa_laevigata	RLG00000009927 RLG00000018798 RLG00000022503 RLG00000023987 RLG00000023989 RLG00000023993
rosa_multiflora	Rmu_co8137536.1_g000001 Rmu_sc0000140.1_g000001 Rmu_sc0000302.1_g000016 Rmu_sc0002897.1_g000003 Rmu_sc0002963.1_g000003 Rmu_sc0003069.1_g000002 Rmu_sc0004688.1_g000012 Rmu_sc0005617.1_g000005 Rmu_sc0005975.1_g000001 Rmu_sc0005978.1_g000005 Rmu_sc0005978.1_g000006 Rmu_sc0006074.1_g000005 Rmu_sc0007035.1_g000012 Rmu_sc0009453.1_g000002 Rmu_sc0013078.1_g000001 Rmu_ssc0000210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029350 Rroxscaffold_6G00407830 Rroxscaffold_6G00407880 Rroxscaffold_6G00407900 Rroxscaffold_6G00407910 Rroxscaffold_6G00407940
rosa_rugosa	Rorug02G0048000 Rorug03G0134300 Rorug03G0134400 Rorug03G0134500 Rorug03G0134600 Rorug03G0134700 Rorug03G0134900 Rorug03G0135000 Rorug03G0135000
rosa_samantha	Rh2AG590800 Rh2CG599100 Rh3AG185600 Rh3AG185700 Rh3AG185800 Rh3AG186000 Rh3BG213700 Rh3BG213900 Rh3CG210300 Rh3CG210400 Rh3CG210500 Rh3CG210700 Rh3DG209400 Rh3DG209500 Rh3DG209600 Rh3DG209800
rosa_wichuraiana	Rw0G007990 Rw0G008000 Rw0G008020 Rw0G008870 Rw3G016960 Rw3G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	2 cut(s)	219, 288
AcvI	CACGTG	1 cut(s)	204
AcyI	GRCGYC	2 cut(s)	282, 312
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	3 cut(s)	255, 291, 553
AgsI	TTSAA	1 cut(s)	27
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	5 cut(s)	224, 241, 337, 451, 572
AluI	AGCT	5 cut(s)	224, 241, 337, 451, 572
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	2 cut(s)	319, 403
AoxI	GGCC	2 cut(s)	50, 506
ApeKI	GCWGC	4 cut(s)	371, 609, 620, 632
AspS9I	GGNCC	2 cut(s)	51, 512
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	2 cut(s)	320, 563
AvaII	GGWCC	1 cut(s)	512
BanII	GRGCYC	2 cut(s)	333, 642
BbrPI	CACGTG	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	4 cut(s)	358, 596, 607, 619
BccI	CCATC	2 cut(s)	253, 681
BceAI	ACGGC	2 cut(s)	65, 701
BciT130I	CCWGG	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	2 cut(s)	319, 403
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	4 cut(s)	372, 610, 621, 633
BlsI	GCNGC	4 cut(s)	373, 611, 622, 634
Bme1390I	CCNGG	2 cut(s)	135, 510
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	2 cut(s)	51, 512
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	2 cut(s)	135, 510
BmrI	ACTGGG	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	543
BplI	GAGNNNNNCTC	2 cut(s)	174, 206
BpmI	CTGGAG	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	510
BsaAI	YACGTR	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	672
BsaHI	GRCGYC	2 cut(s)	282, 312
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	5 cut(s)	133, 134, 147, 267, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	255, 291, 553
Bse1I	ACTGG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	5 cut(s)	133, 134, 147, 267, 547
BseGI	GGATG	3 cut(s)	245, 409, 576
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	3 cut(s)	255, 291, 553
BseMII	CTCAG	3 cut(s)	362, 372, 477
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	358, 596, 607, 619
BsgI	GTGCAG	1 cut(s)	606
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	52, 508
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	509
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	3 cut(s)	255, 291, 553
BsmAI	GTCTC	2 cut(s)	319, 403
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	525
BsnI	GGCC	2 cut(s)	52, 508
Bso31I	GGTCTC	1 cut(s)	403
Bsp1286I	GDGCHC	3 cut(s)	266, 333, 642
Bsp143I	GATC	1 cut(s)	667
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	2 cut(s)	219, 288
BspANI	GGCC	2 cut(s)	52, 508
BspCNI	CTCAG	3 cut(s)	361, 373, 478
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	513
BspQI	GCTCTTC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	5 cut(s)	133, 134, 147, 267, 547
BssMI	GATC	1 cut(s)	667
BssNI	GRCGYC	2 cut(s)	282, 312
BssT1I	CCWWGG	3 cut(s)	147, 267, 547
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	175, 654
Bst6I	CTCTTC	2 cut(s)	148, 254
BstACI	GRCGYC	2 cut(s)	282, 312
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstBAI	YACGTR	1 cut(s)	204
BstC8I	GCNNGC	4 cut(s)	187, 286, 363, 625
BstDEI	CTNAG	3 cut(s)	348, 381, 486
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	3 cut(s)	245, 409, 576
BstKTI	GATC	1 cut(s)	670
BstMAI	GTCTC	2 cut(s)	319, 403
BstMBI	GATC	1 cut(s)	667
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	4 cut(s)	353, 362, 371, 629
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	133, 508
BstV1I	GCAGC	4 cut(s)	358, 596, 607, 619
BstV2I	GAAGAC	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	52, 508
BtgI	CCRYGG	1 cut(s)	267
BtgZI	GCGATG	1 cut(s)	426
BtsCI	GGATG	3 cut(s)	245, 409, 576
BtsIMutI	CAGTG	3 cut(s)	17, 174, 483
Cac8I	GCNNGC	4 cut(s)	187, 286, 363, 625
CciI	TCATGA	1 cut(s)	529
Cfr13I	GGNCC	2 cut(s)	51, 512
CseI	GACGC	3 cut(s)	203, 290, 691
Csp6I	GTAC	1 cut(s)	688
CviAII	CATG	6 cut(s)	215, 268, 521, 530, 617, 629
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	3 cut(s)	348, 381, 486
DpnI	GATC	1 cut(s)	669
DpnII	GATC	1 cut(s)	667
Eam1104I	CTCTTC	2 cut(s)	148, 254
EarI	CTCTTC	2 cut(s)	148, 254
EciI	GGCGGA	1 cut(s)	234
Eco130I	CCWWGG	3 cut(s)	147, 267, 547
Eco24I	GRGCYC	2 cut(s)	333, 642
Eco31I	GGTCTC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	512
Eco72I	CACGTG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	3 cut(s)	147, 267, 547
EcoT38I	GRGCYC	2 cut(s)	333, 642
ErhI	CCWWGG	3 cut(s)	147, 267, 547
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	6 cut(s)	218, 271, 524, 533, 620, 632
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	6 cut(s)	214, 267, 520, 529, 616, 628
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	372, 610, 621, 633
FokI	GGATG	3 cut(s)	232, 416, 563
FriOI	GRGCYC	2 cut(s)	333, 642
Fsp4HI	GCNGC	4 cut(s)	372, 610, 621, 633
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	4 cut(s)	372, 610, 621, 633
GsuI	CTGGAG	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	52, 508
HapII	CCGG	1 cut(s)	509
HgaI	GACGC	3 cut(s)	203, 290, 691
Hin1I	GRCGYC	2 cut(s)	282, 312
Hin1II	CATG	6 cut(s)	218, 271, 524, 533, 620, 632
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	509
HphI	GGTGA	2 cut(s)	320, 563
Hpy166II	GTNNAC	2 cut(s)	280, 559
Hpy188I	TCNGA	6 cut(s)	250, 351, 403, 678, 701, 725
Hpy188III	TCNNGA	3 cut(s)	155, 229, 530
Hpy8I	GTNNAC	2 cut(s)	280, 559
Hpy99I	CGWCG	5 cut(s)	197, 284, 602, 685, 722
HpyAV	CCTTC	3 cut(s)	401, 599, 652
HpyCH4III	ACNGT	2 cut(s)	175, 654
HpyCH4IV	ACGT	3 cut(s)	203, 273, 312
HpyCH4V	TGCA	2 cut(s)	361, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	353, 362, 371, 629
HpyF3I	CTNAG	3 cut(s)	348, 381, 486
HpySE526I	ACGT	3 cut(s)	203, 273, 312
Hsp92I	GRCGYC	2 cut(s)	282, 312
Hsp92II	CATG	6 cut(s)	218, 271, 524, 533, 620, 632
Kzo9I	GATC	1 cut(s)	667
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	8 cut(s)	120, 147, 199, 298, 312, 331, 347, 522
Lsp1109I	GCAGC	4 cut(s)	358, 596, 607, 619
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	3 cut(s)	203, 273, 312
MaeIII	GTNAC	4 cut(s)	169, 199, 298, 308
MalI	GATC	1 cut(s)	669
MboI	GATC	1 cut(s)	667
MboII	GAAGA	4 cut(s)	135, 271, 545, 548
MfeI	CAATTG	1 cut(s)	663
MhlI	GDGCHC	3 cut(s)	266, 333, 642
MluCI	AATT	3 cut(s)	477, 663, 707
MseI	TTAA	1 cut(s)	582
MspI	CCGG	1 cut(s)	509
MspR9I	CCNGG	2 cut(s)	135, 510
MunI	CAATTG	1 cut(s)	663
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	4 cut(s)	353, 362, 371, 629
NciI	CCSGG	1 cut(s)	510
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	1 cut(s)	667
NlaIII	CATG	6 cut(s)	218, 271, 524, 533, 620, 632
NlaIV	GGNNCC	1 cut(s)	513
NmeAIII	GCCGAG	1 cut(s)	661
NmuCI	GTSAC	4 cut(s)	169, 199, 298, 308
NspI	RCATGY	1 cut(s)	620
PagI	TCATGA	1 cut(s)	529
PasI	CCCWGGG	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	158
PflFI	GACNNNGTC	3 cut(s)	197, 275, 516
PkrI	GCNGC	4 cut(s)	373, 611, 622, 634
PmaCI	CACGTG	1 cut(s)	204
PmlI	CACGTG	1 cut(s)	204
Ppu21I	YACGTR	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	133
PspCI	CACGTG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	2 cut(s)	51, 512
PsyI	GACNNNGTC	3 cut(s)	197, 275, 516
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
SalI	GTCGAC	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	4 cut(s)	372, 610, 621, 633
Sau3AI	GATC	1 cut(s)	667
Sau96I	GGNCC	2 cut(s)	51, 512
ScrFI	CCNGG	2 cut(s)	135, 510
SduI	GDGCHC	3 cut(s)	266, 333, 642
SinI	GGWCC	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	477, 663, 707
SsiI	CCGC	2 cut(s)	219, 288
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	133, 508
StyI	CCWWGG	3 cut(s)	147, 267, 547
TaaI	ACNGT	2 cut(s)	175, 654
TaiI	ACGT	3 cut(s)	206, 276, 315
TaqI	TCGA	7 cut(s)	154, 181, 192, 228, 279, 442, 597
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	3 cut(s)	477, 663, 707
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	3 cut(s)	17, 174, 490
TseFI	GTSAC	4 cut(s)	169, 199, 298, 308
TseI	GCWGC	4 cut(s)	371, 609, 620, 632
Tsp45I	GTSAC	4 cut(s)	169, 199, 298, 308
TspDTI	ATGAA	5 cut(s)	17, 420, 518, 546, 582
TspRI	CASTG	3 cut(s)	17, 174, 490
Tth111I	GACNNNGTC	3 cut(s)	197, 275, 516
VpaK11BI	GGWCC	1 cut(s)	512
XceI	RCATGY	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	162
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.