Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

948994 .. 949440

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1015200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTCGCAAGGTACTTGCATAGACGCTTTCCAAATTGTAAAAATGGAGGAAAGGAGGAAGTGAACTTCTTGGAGGTTTCGAAAGGAAGAACAAAGAAAGAAACTGCAAGGCTGTTTTACGAGCTACTGGTGTTGAAGACTCAAGGGTATGTGAATGTGAAGCAAGATGTTTCCTATGGTGATATACTGATCTCAAAACGTCCGAAACGGGACAAAACGTGGGTAGATGACGATATGGTCAACAGAGGCACCTCAGAAACTATGTACGTGCGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

93

Amino Acids

10.79

Weight (kDa)

9.71

Isoelectric Point (pI)

29.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8	PF04824	18 - 69	2.3e-18	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	248
AfaI	GTAC	2 cut(s)	14, 266
AgsI	TTSAA	1 cut(s)	136
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	191
AsuII	TTCGAA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	143
Bpu14I	TTCGAA	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	250
BspT104I	TTCGAA	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	268
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	253
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	273
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	13, 265
CviJI	RGCY	2 cut(s)	112, 124
CviKI_1	RGCY	2 cut(s)	112, 124
CviQI	GTAC	2 cut(s)	13, 265
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
FaiI	YATR	7 cut(s)	21, 150, 177, 185, 236, 263, 277
FaqI	GGGAC	1 cut(s)	224
HgaI	GACGC	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	139
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	64, 241
Hpy188I	TCNGA	2 cut(s)	204, 256
Hpy8I	GTNNAC	2 cut(s)	64, 241
HpyCH4IV	ACGT	3 cut(s)	199, 218, 267
HpyCH4V	TGCA	3 cut(s)	19, 107, 275
HpyF3I	CTNAG	1 cut(s)	253
HpySE526I	ACGT	3 cut(s)	199, 218, 267
Kzo9I	GATC	1 cut(s)	189
LpnPI	CCDG	1 cut(s)	113
MaeII	ACGT	3 cut(s)	199, 218, 267
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	2 cut(s)	99, 148
MluCI	AATT	1 cut(s)	34
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	5 cut(s)	41, 49, 67, 239, 262
NdeII	GATC	1 cut(s)	189
NlaIV	GGNNCC	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	80
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	250
RsaI	GTAC	2 cut(s)	14, 266
RsaNI	GTAC	2 cut(s)	13, 265
Sau3AI	GATC	1 cut(s)	189
SchI	GAGTC	1 cut(s)	133
SetI	ASST	7 cut(s)	14, 78, 126, 202, 221, 254, 270
SfuI	TTCGAA	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	1 cut(s)	34
TaiI	ACGT	3 cut(s)	202, 221, 270
TaqI	TCGA	1 cut(s)	80
TasI	AATT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.