Rh2AG632200

Sister chromatid cohesion 1 protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
85840574 .. 85844581
4008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG632200.1

Sequence Viewer

Length: 546 bp
ATGTATGAGGAAGCTGAATTTTGCGAAGGATTTAATCCTGAACTCGATGGGTTTTCAGTGAGAACCAGAAAGGTGGCGAGGTACTTGCACAGGCACTTTACAGTTTGCAACAGTTGTAGAGAGGAAGAAGTGAACTTGTTGGAGGTTGCAGAACGAAGAACCAAGAAAGAAAGTGCAATGCTATTCTATGAGACACTGGTGATGAAAACTAGAGGGTTTGTGGATGTGAAGCGAGCTGATCGCTATTCTATTCTGGAAACGTCCCAAATGGGAGCAAATCTCAAGAAGGCCCAGGTCACTGAAACTGACATCTCAGCCTCTATTGATAAAATTTTGAAGGATGATTGGGATGTCATCGCATATAGGGTACTGGCCTACCTTCTTCTTGGTGTTGTTCGGATATACTCGAAAAAAGTTGAATACCTTTTTGATGTCTGCCATGAGGGGATCCCTGAAGATGTCAGTGGGGGAAATGTAGTATCCTACGAAGCTATCACGCTTAAAGTGTACTTTCATTTGACGGGATGGAATTGGATATGGAGTTAA

Protein Analysis

181

Amino Acids

21.06

Weight (kDa)

5.65

Isoelectric Point (pI)

25.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad21_Rec8 PF04824 42 - 78 2.2e-07 Conserved region of Rad21 / Rec8 like protein
Rad21_Rec8_N PF04825 89 - 148 1.2e-12 N terminus of Rad21 / Rec8 like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 442, 455
AcsI RAATTY 2 cut(s) 17, 330
AcuI CTGAAG 1 cut(s) 474
AfaI GTAC 3 cut(s) 83, 369, 509
AgsI TTSAA 2 cut(s) 337, 419
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 3 cut(s) 14, 236, 491
AluI AGCT 3 cut(s) 14, 236, 491
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 2 cut(s) 442, 455
AoxI GGCC 2 cut(s) 288, 372
ApoI RAATTY 2 cut(s) 17, 330
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 211
BamHI GGATCC 1 cut(s) 447
BccI CCATC 2 cut(s) 41, 519
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 1 cut(s) 293
BciVI GTATCC 1 cut(s) 490
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 1 cut(s) 210
BfuI GTATCC 1 cut(s) 490
Bme1390I CCNGG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 449
BmrFI CCNGG 1 cut(s) 293
BplI GAGNNNNNCTC 2 cut(s) 264, 296
BpuEI CTTGAG 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 291
Bse1I ACTGG 2 cut(s) 201, 375
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 4 cut(s) 229, 346, 355, 530
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 201, 375
BshFI GGCC 2 cut(s) 290, 374
BslFI GGGAC 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 2 cut(s) 290, 374
Bsp143I GATC 2 cut(s) 238, 447
BspANI GGCC 2 cut(s) 290, 374
BspCNI CTCAG 1 cut(s) 326
BspLI GGNNCC 1 cut(s) 449
BspPI GGATC 2 cut(s) 442, 455
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 2 cut(s) 201, 375
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 2 cut(s) 238, 447
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 2 cut(s) 103, 113
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 313
BstF5I GGATG 4 cut(s) 229, 346, 355, 530
BstKTI GATC 2 cut(s) 241, 450
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 2 cut(s) 238, 447
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 447
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 1 cut(s) 447
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 2 cut(s) 290, 374
BtgZI GCGATG 1 cut(s) 340
BtsCI GGATG 4 cut(s) 229, 346, 355, 530
BtsIMutI CAGTG 4 cut(s) 63, 194, 297, 469
Cac8I GCNNGC 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 3 cut(s) 82, 368, 508
CviAII CATG 1 cut(s) 440
CviJI RGCY 6 cut(s) 14, 236, 290, 317, 374, 491
CviKI_1 RGCY 6 cut(s) 14, 236, 290, 317, 374, 491
CviQI GTAC 3 cut(s) 82, 368, 508
DdeI CTNAG 1 cut(s) 313
DpnI GATC 2 cut(s) 240, 449
DpnII GATC 2 cut(s) 238, 447
Eco57I CTGAAG 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 291
FaeI CATG 1 cut(s) 443
FaiI YATR 7 cut(s) 6, 189, 361, 363, 403, 441, 538
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 439
FokI GGATG 4 cut(s) 236, 353, 362, 537
FspBI CTAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 290, 374
Hin1II CATG 1 cut(s) 443
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 133, 508
Hpy188I TCNGA 1 cut(s) 399
Hpy188III TCNNGA 3 cut(s) 38, 254, 283
Hpy8I GTNNAC 2 cut(s) 133, 508
HpyAV CCTTC 4 cut(s) 20, 280, 331, 389
HpyCH4III ACNGT 2 cut(s) 103, 113
HpyCH4IV ACGT 1 cut(s) 260
HpyCH4V TGCA 4 cut(s) 88, 108, 149, 176
HpyF3I CTNAG 1 cut(s) 313
HpySE526I ACGT 1 cut(s) 260
Hsp92II CATG 1 cut(s) 443
Kzo9I GATC 2 cut(s) 238, 447
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 9 cut(s) 51, 76, 79, 182, 239, 278, 305, 356, 465
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 240, 449
MboI GATC 2 cut(s) 238, 447
MboII GAAGA 4 cut(s) 137, 168, 374, 467
MflI RGATCY 1 cut(s) 447
MluCI AATT 3 cut(s) 17, 330, 529
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 6 cut(s) 72, 115, 136, 206, 328, 436
MseI TTAA 3 cut(s) 33, 501, 544
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
NdeII GATC 2 cut(s) 238, 447
NlaIII CATG 1 cut(s) 443
NlaIV GGNNCC 1 cut(s) 449
NmuCI GTSAC 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 449
PspPI GGNCC 1 cut(s) 289
PsuI RGATCY 1 cut(s) 447
RsaI GTAC 3 cut(s) 83, 369, 509
RsaNI GTAC 3 cut(s) 82, 368, 508
SaqAI TTAA 3 cut(s) 33, 501, 544
Sau3AI GATC 2 cut(s) 238, 447
Sau96I GGNCC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 3 cut(s) 17, 330, 529
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 103, 113
TaiI ACGT 1 cut(s) 263
TaqI TCGA 2 cut(s) 45, 407
TasI AATT 3 cut(s) 17, 330, 529
TatI WGTACW 1 cut(s) 507
Tru1I TTAA 3 cut(s) 33, 501, 544
Tru9I TTAA 3 cut(s) 33, 501, 544
TscAI CASTG 4 cut(s) 63, 201, 304, 469
TseFI GTSAC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 218, 503
TspRI CASTG 4 cut(s) 63, 201, 304, 469
XapI RAATTY 2 cut(s) 17, 330
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.