Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

80163763 .. 80164348

Gene Structure 586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG627800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATGGAAATAGACTTGGTGCAACCAGAAAATCAGAGTTTTCAGATTACAAGAGAAGAGCATAGTCTAAGAAACTTAGAAGCTGACATGGAGAATCTGAAAACTGTTACATTTTCTCAAGAAGAATCCCTGGGCCTTGATGTGGTTTGTTGGGCCAAGAAACCTCAAGAACTTGTTTGTTTATATGGAGAAGAGAATCATAATGATGAAGAGCCAACTAAGTTACAGGACGTGATTGCACCAGATACCATGAAAAGTATTCTGGAAGAACATCCAGATCCCCTCTCAGTTGCATATTATGGCAGTCCTGATGCCAAGCAGCCAGATGCTATAGGTGTTACTACAACAAAATTGACGGCTGTTCCCAGACCAGCTTCCAAGAAGTTGGCTCGGATTTCTAGTAAAAGAAAGTGTGTCTTTGATTTAGTAGTGCTGCCTAATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

148

Amino Acids

16.65

Weight (kDa)

4.9

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	83, 374
AluI	AGCT	2 cut(s)	83, 374
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	2 cut(s)	133, 153
ApeKI	GCWGC	2 cut(s)	319, 433
AspS9I	GGNCC	2 cut(s)	133, 153
BbvI	GCAGC	2 cut(s)	331, 420
BceAI	ACGGC	1 cut(s)	372
BciT130I	CCWGG	1 cut(s)	131
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	2 cut(s)	320, 434
BlsI	GCNGC	2 cut(s)	321, 435
Bme1390I	CCNGG	1 cut(s)	131
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	133, 153
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	2 cut(s)	301, 316
BpuEI	CTTGAG	2 cut(s)	102, 150
BsaJI	CCNNGG	2 cut(s)	129, 130
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	129, 130
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	331, 420
BshFI	GGCC	2 cut(s)	135, 155
BslI	CCNNNNNNNGG	1 cut(s)	142
BsnI	GGCC	2 cut(s)	135, 155
Bsp143I	GATC	1 cut(s)	277
BspANI	GGCC	2 cut(s)	135, 155
BspCNI	CTCAG	1 cut(s)	299
BspPI	GGATC	1 cut(s)	272
BspQI	GCTCTTC	2 cut(s)	51, 204
BssECI	CCNNGG	2 cut(s)	129, 130
BssMI	GATC	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	3 cut(s)	51, 186, 204
BstDEI	CTNAG	4 cut(s)	68, 76, 219, 286
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	331, 420
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	135, 155
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	133, 153
CviAII	CATG	2 cut(s)	88, 250
CviJI	RGCY	8 cut(s)	83, 135, 155, 214, 322, 359, 374, 389
CviKI_1	RGCY	8 cut(s)	83, 135, 155, 214, 322, 359, 374, 389
DdeI	CTNAG	4 cut(s)	68, 76, 219, 286
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eam1104I	CTCTTC	3 cut(s)	51, 186, 204
EarI	CTCTTC	3 cut(s)	51, 186, 204
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	91, 253
FaiI	YATR	9 cut(s)	63, 89, 184, 186, 201, 251, 295, 300, 332
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	2 cut(s)	87, 249
Fnu4HI	GCNGC	2 cut(s)	320, 434
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	320, 434
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	2 cut(s)	320, 434
HaeIII	GGCC	2 cut(s)	135, 155
Hin1II	CATG	2 cut(s)	91, 253
HinfI	GANTC	3 cut(s)	94, 125, 196
Hpy188I	TCNGA	4 cut(s)	36, 45, 99, 393
Hpy188III	TCNNGA	5 cut(s)	119, 167, 263, 275, 308
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	22, 239, 293
HpyF3I	CTNAG	4 cut(s)	68, 76, 219, 286
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	91, 253
Kzo9I	GATC	1 cut(s)	277
LguI	GCTCTTC	2 cut(s)	51, 204
Lsp1109I	GCAGC	2 cut(s)	331, 420
LweI	GCATC	2 cut(s)	301, 316
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	106, 222, 337
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	5 cut(s)	68, 134, 203, 221, 278
MflI	RGATCY	1 cut(s)	277
MluCI	AATT	1 cut(s)	350
MnlI	CCTC	2 cut(s)	174, 293
MslI	CAYNNNNRTG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	2 cut(s)	91, 253
PasI	CCCWGGG	1 cut(s)	130
PciSI	GCTCTTC	2 cut(s)	51, 204
PfeI	GAWTC	3 cut(s)	94, 125, 196
PkrI	GCNGC	2 cut(s)	321, 435
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	133, 153
PsuI	RGATCY	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	204
SapI	GCTCTTC	2 cut(s)	51, 204
SatI	GCNGC	2 cut(s)	320, 434
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	2 cut(s)	133, 153
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	5 cut(s)	85, 166, 234, 337, 376
SfaNI	GCATC	2 cut(s)	301, 316
SfcI	CTRYAG	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	117, 165
SmoI	CTYRAG	2 cut(s)	117, 165
Sse9I	AATT	1 cut(s)	350
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	234
TasI	AATT	1 cut(s)	350
TfiI	GAWTC	3 cut(s)	94, 125, 196
TseI	GCWGC	2 cut(s)	319, 433
TspDTI	ATGAA	2 cut(s)	222, 266
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.