Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

9666950 .. 9668030

Gene Structure 1081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG066100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATAGGCAGTCCTGACGCCAAGCAGCCAGATGCTCGAGATGTTGCTACACCAAAATTGATGGCTGTTCCAAGACCAGCTTCCAAGAAGTCGGCTCGGATTCTCAGGAAAGAAAATGAAGTAAAGTTAGATTTGTTGGACTGTCGAAGGACTGGTATATCAGAGCAAATAGAGGTTGTAGATACGGAAACTGTTGAACCTCCAGAAGACTTAAATGTGTTGGAATATCCATGTACTGTTGGATTAGAACATGCTGAAATTGCACCAGACACACCTGTTCTTCGCTCAAAATCAATCAAATCATTTCATAGTCCAAGGAGTCCTGAAGTTCCTGATATGGATCTAGTAAGACCTGAGACATCTGGAAGGATAGAAAAAGAACCATTTTTGGGAGCAGAGCAAACTTTCCCTTCTGGAAGTGTTAGAAGAAGTAGCATGACTTCAATTTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

151

Amino Acids

16.72

Weight (kDa)

5.21

Isoelectric Point (pI)

69.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	2 cut(s)	197, 444
AjuI	GAANNNNNNNTTGG	2 cut(s)	64, 96
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	348
Ama87I	CYCGRG	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	36
BarI	GAAGNNNNNNTAC	2 cut(s)	424, 456
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	1 cut(s)	344
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	157
Bse8I	GATNNNNATC	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	314
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	2 cut(s)	118, 345
BseNI	ACTGG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	340
BspCNI	CTCAG	2 cut(s)	117, 346
BspPI	GGATC	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	1 cut(s)	340
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	314
Bst4CI	ACNGT	3 cut(s)	143, 193, 238
BstACI	GRCGYC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	104, 354
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	3 cut(s)	231, 251, 436
CviJI	RGCY	4 cut(s)	28, 65, 80, 95
CviKI_1	RGCY	4 cut(s)	28, 65, 80, 95
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	2 cut(s)	104, 354
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	3 cut(s)	234, 254, 439
FaiI	YATR	6 cut(s)	158, 232, 252, 309, 338, 437
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FatI	CATG	3 cut(s)	230, 250, 435
Fnu4HI	GCNGC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	3 cut(s)	234, 254, 439
HinfI	GANTC	2 cut(s)	100, 319
Hpy188I	TCNGA	2 cut(s)	99, 163
Hpy188III	TCNNGA	8 cut(s)	14, 38, 106, 203, 323, 332, 363, 414
HpyAV	CCTTC	3 cut(s)	141, 360, 420
HpyCH4III	ACNGT	3 cut(s)	143, 193, 238
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	104, 354
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	234, 254, 439
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	344
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	3 cut(s)	218, 272, 438
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	3 cut(s)	56, 258, 444
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	3 cut(s)	117, 201, 220
MnlI	CCTC	2 cut(s)	166, 210
MseI	TTAA	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	3 cut(s)	234, 254, 439
NspI	RCATGY	1 cut(s)	254
PaeR7I	CTCGAG	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	328
SetI	ASST	5 cut(s)	82, 177, 202, 277, 355
SfaNI	GCATC	1 cut(s)	22
Sfr274I	CTCGAG	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	3 cut(s)	56, 258, 444
SspMI	CTAG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	3 cut(s)	143, 193, 238
TaqI	TCGA	2 cut(s)	37, 145
TasI	AATT	3 cut(s)	56, 258, 444
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	132, 296
TspGWI	ACGGA	1 cut(s)	200
XceI	RCATGY	1 cut(s)	254
XhoI	CTCGAG	1 cut(s)	36
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.