Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040737.1

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2171

Gene Structure 2171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040737.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 949 bp

ataaaattttgaaggatgattgggatgtcatcgcatatagggtactagcctaccttcttcttggtgttgttcgaatatactcaaaaaaagttgaatacctttttgatgactgccacgaagtgctaactgaaatcaacaagtttgttgttagcacaaaagagaagggagacacggatacattttgtgcgccttatgactctgttaccctaccagagaggtttgaacttgatgcatttgatttggggctccctgaagatgtcagtggtgtactttcatttgacgggatggaattggatatggagttaaggacgtcaaggaatggagctaacccagaagtaaacatggagaatcctcaagagagtaggttctctcaagtagaaactaatggagaacagataaaggttccggatatagcattgtctgaagatgggactctaggagaagcaaggcaggaaaagcttccagaccttaggtctgaggaaaaaggtctgaaccatgaaacattttttggcattgaagaagagcccctaaaccaagttgaaccatttggtgaagatcacgaaactaatggggagcaaataaaggctcctgctgtagtccagtctgttgatggaattcaagaagaggcaagcctggaaccttcctgtcatgttacatcatctggtgaagatcaccacattattcaagaggagattatcatgcaatcagaaaatcaaatgtgtccagttacaagagaagaccacaatctaagcaacttggaagctgacaggggaaacctgaaaagttgtacacctgctctagaagagaacatggaccttgataagtcttgtgacttaaagaaacctgaaaaacctgtttgttcatatggggaagagaatcataaggatggagagccaacaaagttacaggacacgattccaccagataatgtgaattgtcaaattactgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

316

Amino Acids

35.47

Weight (kDa)

4.33

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	801
AatII	GACGTC	1 cut(s)	313
Acc36I	ACCTGC	1 cut(s)	801
AccIII	TCCGGA	1 cut(s)	405
AcsI	RAATTY	2 cut(s)	5, 614
AcuI	CTGAAG	2 cut(s)	272, 443
AcyI	GRCGYC	1 cut(s)	310
AdeI	CACNNNGTG	1 cut(s)	120
AfaI	GTAC	3 cut(s)	44, 269, 789
AgsI	TTSAA	7 cut(s)	12, 94, 223, 517, 541, 619, 685
AhdI	GACNNNNNGTC	1 cut(s)	471
AjnI	CCWGG	1 cut(s)	632
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	3 cut(s)	325, 459, 763
AluI	AGCT	3 cut(s)	325, 459, 763
Alw26I	GTCTC	1 cut(s)	161
Aor13HI	TCCGGA	1 cut(s)	405
ApoI	RAATTY	2 cut(s)	5, 614
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	813
AsuHPI	GGTGA	3 cut(s)	562, 664, 676
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	813
AxyI	CCTNAGG	1 cut(s)	469
BanII	GRGCYC	2 cut(s)	248, 527
BbsI	GAAGAC	1 cut(s)	743
BccI	CCATC	4 cut(s)	279, 421, 604, 880
BciT130I	CCWGG	1 cut(s)	634
BciVI	GTATCC	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	3 cut(s)	46, 436, 799
BfmI	CTRYAG	1 cut(s)	593
BfuAI	ACCTGC	1 cut(s)	801
BfuI	GTATCC	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	634
Bme18I	GGWCC	1 cut(s)	813
BmeRI	GACNNNNNGTC	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	813
BmiI	GGNNCC	4 cut(s)	247, 404, 587, 638
BmrFI	CCNGG	1 cut(s)	634
BmsI	GCATC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	743
Bpu14I	TTCGAA	1 cut(s)	72
BpuEI	CTTGAG	2 cut(s)	338, 356
BsaHI	GRCGYC	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	405
Bse1I	ACTGG	2 cut(s)	600, 724
Bse21I	CCTNAGG	1 cut(s)	469
BseAI	TCCGGA	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	634
BseGI	GGATG	4 cut(s)	21, 30, 290, 891
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	2 cut(s)	600, 724
BseRI	GAGGAG	1 cut(s)	703
BsiSI	CCGG	1 cut(s)	406
BslFI	GGGAC	1 cut(s)	444
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	444
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	248, 527
Bsp13I	TCCGGA	1 cut(s)	405
Bsp1407I	TGTACA	1 cut(s)	787
Bsp143I	GATC	2 cut(s)	555, 669
BspCNI	CTCAG	1 cut(s)	468
BspEI	TCCGGA	1 cut(s)	405
BspLI	GGNNCC	4 cut(s)	247, 404, 587, 638
BspMI	ACCTGC	1 cut(s)	801
BspQI	GCTCTTC	1 cut(s)	515
BspT104I	TTCGAA	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	787
BsrI	ACTGG	2 cut(s)	600, 724
BssMI	GATC	2 cut(s)	555, 669
BssNI	GRCGYC	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	634
Bst6I	CTCTTC	4 cut(s)	515, 617, 797, 866
BstACI	GRCGYC	1 cut(s)	310
BstAUI	TGTACA	1 cut(s)	787
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	3 cut(s)	469, 476, 748
BstF5I	GGATG	4 cut(s)	21, 30, 290, 891
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	2 cut(s)	558, 672
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	555, 669
BstMWI	GCNNNNNNNGC	1 cut(s)	456
BstNI	CCWGG	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	632
BstSFI	CTRYAG	1 cut(s)	593
BstV2I	GAAGAC	1 cut(s)	743
Bsu36I	CCTNAGG	1 cut(s)	469
BsuI	GTATCC	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	15
BtsCI	GGATG	4 cut(s)	21, 30, 290, 891
BtsIMutI	CAGTG	1 cut(s)	267
BveI	ACCTGC	1 cut(s)	801
Cac8I	GCNNGC	1 cut(s)	630
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	813
Csp6I	GTAC	3 cut(s)	43, 268, 788
CviAII	CATG	5 cut(s)	342, 496, 649, 699, 810
CviJI	RGCY	9 cut(s)	49, 246, 325, 459, 525, 586, 632, 763, 894
CviKI_1	RGCY	9 cut(s)	49, 246, 325, 459, 525, 586, 632, 763, 894
CviQI	GTAC	3 cut(s)	43, 268, 788
DdeI	CTNAG	3 cut(s)	469, 476, 748
DpnI	GATC	2 cut(s)	557, 671
DpnII	GATC	2 cut(s)	555, 669
DraIII	CACNNNGTG	1 cut(s)	120
DriI	GACNNNNNGTC	1 cut(s)	471
Eam1104I	CTCTTC	4 cut(s)	515, 617, 797, 866
Eam1105I	GACNNNNNGTC	1 cut(s)	471
EarI	CTCTTC	4 cut(s)	515, 617, 797, 866
Eco24I	GRGCYC	2 cut(s)	248, 527
Eco47I	GGWCC	1 cut(s)	813
Eco57I	CTGAAG	2 cut(s)	272, 443
Eco81I	CCTNAGG	1 cut(s)	469
EcoRI	GAATTC	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	632
EcoT22I	ATGCAT	1 cut(s)	234
EcoT38I	GRGCYC	2 cut(s)	248, 527
FaeI	CATG	5 cut(s)	345, 499, 652, 702, 813
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	5 cut(s)	341, 495, 648, 698, 809
FauNDI	CATATG	1 cut(s)	864
FokI	GGATG	4 cut(s)	28, 37, 297, 898
FriOI	GRGCYC	2 cut(s)	248, 527
FspBI	CTAG	3 cut(s)	46, 436, 799
GlaI	GCGC	1 cut(s)	188
HapII	CCGG	1 cut(s)	406
HhaI	GCGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	5 cut(s)	345, 499, 652, 702, 813
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	457
HinfI	GANTC	5 cut(s)	196, 348, 432, 876, 915
HpaII	CCGG	1 cut(s)	406
HphI	GGTGA	3 cut(s)	562, 664, 676
Hpy166II	GTNNAC	3 cut(s)	268, 339, 790
Hpy188I	TCNGA	4 cut(s)	423, 477, 491, 708
Hpy188III	TCNNGA	7 cut(s)	355, 406, 463, 559, 619, 685, 799
Hpy8I	GTNNAC	3 cut(s)	268, 339, 790
HpyAV	CCTTC	4 cut(s)	6, 64, 156, 650
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	2 cut(s)	232, 702
HpyF10VI	GCNNNNNNNGC	1 cut(s)	456
HpyF3I	CTNAG	3 cut(s)	469, 476, 748
HpySE526I	ACGT	1 cut(s)	310
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	5 cut(s)	345, 499, 652, 702, 813
HspAI	GCGC	1 cut(s)	187
Kpn2I	TCCGGA	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	555, 669
LguI	GCTCTTC	1 cut(s)	515
LmnI	GCTCC	4 cut(s)	251, 322, 573, 591
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	3 cut(s)	46, 436, 799
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	5 cut(s)	201, 651, 726, 829, 902
MalI	GATC	2 cut(s)	557, 671
MboI	GATC	2 cut(s)	555, 669
MhlI	GDGCHC	2 cut(s)	248, 527
MluCI	AATT	5 cut(s)	5, 289, 614, 933, 941
MlyI	GAGTC	2 cut(s)	190, 426
MnlI	CCTC	5 cut(s)	209, 362, 471, 618, 681
Mph1103I	ATGCAT	1 cut(s)	234
MroI	TCCGGA	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	2 cut(s)	304, 835
MslI	CAYNNNNRTG	1 cut(s)	884
MspI	CCGG	1 cut(s)	406
MspR9I	CCNGG	1 cut(s)	634
MvaI	CCWGG	1 cut(s)	634
MwoI	GCNNNNNNNGC	1 cut(s)	456
NdeI	CATATG	1 cut(s)	864
NdeII	GATC	2 cut(s)	555, 669
NlaIII	CATG	5 cut(s)	345, 499, 652, 702, 813
NlaIV	GGNNCC	4 cut(s)	247, 404, 587, 638
NmuCI	GTSAC	1 cut(s)	829
NsiI	ATGCAT	1 cut(s)	234
NspV	TTCGAA	1 cut(s)	72
PaqCI	CACCTGC	1 cut(s)	801
PciSI	GCTCTTC	1 cut(s)	515
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	348, 876, 915
PleI	GAGTC	2 cut(s)	190, 426
PpsI	GAGTC	2 cut(s)	190, 426
Psp6I	CCWGG	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	632
PspN4I	GGNNCC	4 cut(s)	247, 404, 587, 638
PspPI	GGNCC	1 cut(s)	813
RsaI	GTAC	3 cut(s)	44, 269, 789
RsaNI	GTAC	3 cut(s)	43, 268, 788
RseI	CAYNNNNRTG	1 cut(s)	884
SapI	GCTCTTC	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	304, 835
Sau3AI	GATC	2 cut(s)	555, 669
Sau96I	GGNCC	1 cut(s)	813
SchI	GAGTC	2 cut(s)	190, 426
ScrFI	CCNGG	1 cut(s)	634
SduI	GDGCHC	2 cut(s)	248, 527
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	593
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	1 cut(s)	813
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	2 cut(s)	353, 371
SmoI	CTYRAG	2 cut(s)	353, 371
Sse9I	AATT	5 cut(s)	5, 289, 614, 933, 941
SspMI	CTAG	3 cut(s)	46, 436, 799
StyD4I	CCNGG	1 cut(s)	632
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	72
TasI	AATT	5 cut(s)	5, 289, 614, 933, 941
TatI	WGTACW	2 cut(s)	267, 787
TfiI	GAWTC	3 cut(s)	348, 876, 915
Tru1I	TTAA	2 cut(s)	304, 835
Tru9I	TTAA	2 cut(s)	304, 835
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	829
Tsp45I	GTSAC	1 cut(s)	829
TspDTI	ATGAA	3 cut(s)	263, 512, 851
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	813
XapI	RAATTY	2 cut(s)	5, 614
XbaI	TCTAGA	1 cut(s)	798
XcmI	CCANNNNNNNNNTGG	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	3 cut(s)	46, 436, 799
ZraI	GACGTC	1 cut(s)	311
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.