Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

85837941 .. 85840389

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG632100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCGTTTACTTTGGACGTGTTTGAGGGCACTTCTGATCTCAGATAAAATTTTAAAGGATGAATGGGATGGTGTCGCGTATAGAGTACAAGCCTACCTCCTTCTGGGTGTTGTTCGAATATACTCGAGAAAAGTTGAATATCTTTTTGATGACTGCAATGAAGTGCCACTAGGCATCAAGAAATTTGTGTTTAACACAAAAGAAATGCACCTGCAGAAATGCTGTGTGCCGCTTATGACTCTATTACCATACCGGATAGGTTTGAACTTGATGCTTTTGATGTGGGGAGCCTTGAAGATTGAACATTTGGTGCCTCACAAAGAAATCACGCTTAGAGAGGAGACAATGGAAGACTCGGTGCAACTGGACATGATTGCACCAGATACCATAAAAAGTATTCTGGAAGAAGATCCAGATCCCCTCTCAGTTGCATATGATGGCAGTCCTGATGCCAAGCAGCCATATAATCTAGGTTTTACTACACCGAAATTGACGTCTGTTCCCAGACCAGCTTCCAAGAAGTCGGCTCGGATTTCTAGGAAAAGAAACTGTGTCTTTGATGATATAGTAGTGCTGCCTAATGAGGCAATCAGGCAAAGTATACATGATGCTAGTGACTTGGTTGCTAAAAAGAAAGAAGTTCCCAAAAATGCCCATGCTGTTTGGAAAACTAATCGAATTGGAAATCTTGCACAGAATTTCTTGGAGCCATTGAAATCTAACGTTTCGCAAGAGCTTAGGTCCCTCTTATGCAAAAGGAAGTTTAGGAAATTAAAGAGTACTCCCGAGAAGTTAGATTTGTTGGCCTGTCGAAGGACTGGTATATCAGAGCAAATAGAGGTTGTAAATACGGAAACTGTTGAACCTACAGAAGACTTAGATGTGTTGGAATATCCATGCACTGTTGGATTAGAACAAGCAGAAATTGCACCAGACACACCTGTTCTTCGCTCAAAATCAATCAAATCATTTCATAGTCCAAGGAGTCCTGAAGTTGCTGATCTGAATGTAGTAAGACCTGAGACATCTGGAAGGATAGAAAAAGAACCGTCTATGGGAGCAGAGCAAACTTTCCCTTCTGGAAGCATGGAAGAAGTACAACCATCTCTAGATAGGGATGAAGGGCATGACTTCAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

380

Amino Acids

43.11

Weight (kDa)

6.07

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	16 - 67	7.4e-11	N terminus of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	219
AatII	GACGTC	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	601
AccII	CGCG	1 cut(s)	77
AciI	CCGC	1 cut(s)	230
AclI	AACGTT	1 cut(s)	723
AclWI	GGATC	2 cut(s)	404, 410
AcsI	RAATTY	3 cut(s)	48, 182, 697
AcuI	CTGAAG	1 cut(s)	1011
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	3 cut(s)	87, 781, 1098
AfiI	CCNNNNNNNGG	3 cut(s)	103, 813, 1055
AflIII	ACRYGT	1 cut(s)	17
AgsI	TTSAA	7 cut(s)	137, 265, 295, 302, 715, 863, 1135
AjiI	CACGTC	1 cut(s)	18
AluBI	AGCT	2 cut(s)	512, 736
AluI	AGCT	2 cut(s)	512, 736
Alw26I	GTCTC	2 cut(s)	335, 1016
AlwI	GGATC	2 cut(s)	404, 410
Ama87I	CYCGRG	2 cut(s)	124, 785
AoxI	GGCC	1 cut(s)	804
ApeKI	GCWGC	2 cut(s)	457, 574
ApoI	RAATTY	3 cut(s)	48, 182, 697
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AspS9I	GGNCC	1 cut(s)	741
AsuII	TTCGAA	1 cut(s)	115
AvaI	CYCGRG	2 cut(s)	124, 785
AvaII	GGWCC	1 cut(s)	741
BaeGI	GKGCMC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	310
BbsI	GAAGAC	2 cut(s)	357, 879
BbvI	GCAGC	2 cut(s)	469, 561
BccI	CCATC	3 cut(s)	62, 431, 1111
BcoDI	GTCTC	2 cut(s)	335, 1016
BfaI	CTAG	5 cut(s)	170, 470, 537, 612, 1109
BfmI	CTRYAG	2 cut(s)	212, 867
BfuAI	ACCTGC	1 cut(s)	219
BisI	GCNGC	3 cut(s)	230, 458, 575
BlsI	GCNGC	3 cut(s)	231, 459, 576
BmcAI	AGTACT	1 cut(s)	781
Bme18I	GGWCC	1 cut(s)	741
BmeT110I	CYCGRG	2 cut(s)	124, 785
BmgBI	CACGTC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	741
BmiI	GGNNCC	4 cut(s)	289, 312, 708, 743
BmsI	GCATC	4 cut(s)	183, 261, 439, 598
BpiI	GAAGAC	2 cut(s)	357, 879
Bpu10I	CCTNAGC	1 cut(s)	737
Bpu14I	TTCGAA	1 cut(s)	115
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	1 cut(s)	980
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 813, 1055
Bse1I	ACTGG	2 cut(s)	369, 823
Bse3DI	GCAATG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	980
BseGI	GGATG	3 cut(s)	64, 73, 1123
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	3 cut(s)	103, 813, 1055
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	3 cut(s)	54, 438, 1011
BseNI	ACTGG	2 cut(s)	369, 823
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	469, 561
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	806
BshNI	GGYRCC	1 cut(s)	310
BsiHKCI	CYCGRG	2 cut(s)	124, 785
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	3 cut(s)	103, 813, 1055
BsmAI	GTCTC	2 cut(s)	335, 1016
BsmFI	GGGAC	1 cut(s)	727
BsnI	GGCC	1 cut(s)	806
BsoBI	CYCGRG	2 cut(s)	124, 785
Bsp119I	TTCGAA	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	36, 409, 415, 1000
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	806
BspCNI	CTCAG	3 cut(s)	53, 437, 1012
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	4 cut(s)	289, 312, 708, 743
BspMAI	CTGCAG	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	404, 410
BspT104I	TTCGAA	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	369, 823
BssECI	CCNNGG	1 cut(s)	980
BssMI	GATC	4 cut(s)	36, 409, 415, 1000
BssNAI	GTATAC	1 cut(s)	602
BssNI	GRCGYC	1 cut(s)	494
BssT1I	CCWWGG	1 cut(s)	980
Bst1107I	GTATAC	1 cut(s)	602
Bst4CI	ACNGT	4 cut(s)	551, 859, 904, 1050
BstACI	GRCGYC	1 cut(s)	494
BstAPI	GCANNNNNTGC	1 cut(s)	926
BstBI	TTCGAA	1 cut(s)	115
BstDEI	CTNAG	6 cut(s)	40, 332, 424, 737, 877, 1020
BstENI	CCTNNNNNAGG	1 cut(s)	811
BstF5I	GGATG	3 cut(s)	64, 73, 1123
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	4 cut(s)	39, 412, 418, 1003
BstMAI	GTCTC	2 cut(s)	335, 1016
BstMBI	GATC	4 cut(s)	36, 409, 415, 1000
BstMWI	GCNNNNNNNGC	1 cut(s)	926
BstSFI	CTRYAG	2 cut(s)	212, 867
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	469, 561
BstV2I	GAAGAC	2 cut(s)	357, 879
BstX2I	RGATCY	2 cut(s)	409, 415
BstYI	RGATCY	2 cut(s)	409, 415
BstZ17I	GTATAC	1 cut(s)	602
BsuRI	GGCC	1 cut(s)	806
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	3 cut(s)	64, 73, 1123
BtsIMutI	CAGTG	1 cut(s)	900
BveI	ACCTGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	741
Csp6I	GTAC	3 cut(s)	86, 780, 1097
CviAII	CATG	6 cut(s)	370, 605, 656, 897, 1087, 1127
CviJI	RGCY	8 cut(s)	92, 290, 460, 512, 527, 709, 736, 806
CviKI_1	RGCY	8 cut(s)	92, 290, 460, 512, 527, 709, 736, 806
CviQI	GTAC	3 cut(s)	86, 780, 1097
DdeI	CTNAG	6 cut(s)	40, 332, 424, 737, 877, 1020
DpnI	GATC	4 cut(s)	38, 411, 417, 1002
DpnII	GATC	4 cut(s)	36, 409, 415, 1000
DraI	TTTAAA	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	980
Eco47I	GGWCC	1 cut(s)	741
Eco57I	CTGAAG	1 cut(s)	1011
Eco88I	CYCGRG	2 cut(s)	124, 785
EcoNI	CCTNNNNNAGG	1 cut(s)	811
EcoO109I	RGGNCCY	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	980
ErhI	CCWWGG	1 cut(s)	980
FaeI	CATG	6 cut(s)	373, 608, 659, 900, 1090, 1130
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	6 cut(s)	369, 604, 655, 896, 1086, 1126
FauNDI	CATATG	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	3 cut(s)	230, 458, 575
FokI	GGATG	3 cut(s)	71, 80, 1130
Fsp4HI	GCNGC	3 cut(s)	230, 458, 575
FspBI	CTAG	5 cut(s)	170, 470, 537, 612, 1109
GluI	GCNGC	3 cut(s)	230, 458, 575
HaeIII	GGCC	1 cut(s)	806
HapII	CCGG	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	6 cut(s)	373, 608, 659, 900, 1090, 1130
HinfI	GANTC	3 cut(s)	238, 353, 985
HpaII	CCGG	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	8, 602
Hpy188I	TCNGA	5 cut(s)	36, 43, 531, 829, 1005
Hpy8I	GTNNAC	2 cut(s)	8, 602
HpyAV	CCTTC	5 cut(s)	110, 807, 1026, 1086, 1115
HpyCH4III	ACNGT	4 cut(s)	551, 859, 904, 1050
HpyCH4IV	ACGT	3 cut(s)	17, 494, 723
HpyF10VI	GCNNNNNNNGC	1 cut(s)	926
HpyF3I	CTNAG	6 cut(s)	40, 332, 424, 737, 877, 1020
HpySE526I	ACGT	3 cut(s)	17, 494, 723
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	6 cut(s)	373, 608, 659, 900, 1090, 1130
Kzo9I	GATC	4 cut(s)	36, 409, 415, 1000
LmnI	GCTCC	3 cut(s)	287, 706, 1058
Lsp1109I	GCAGC	2 cut(s)	469, 561
LweI	GCATC	4 cut(s)	183, 261, 439, 598
MaeI	CTAG	5 cut(s)	170, 470, 537, 612, 1109
MaeII	ACGT	3 cut(s)	17, 494, 723
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	4 cut(s)	38, 411, 417, 1002
MboI	GATC	4 cut(s)	36, 409, 415, 1000
MboII	GAAGA	7 cut(s)	307, 362, 416, 419, 884, 938, 1103
MflI	RGATCY	2 cut(s)	409, 415
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	8 cut(s)	48, 182, 488, 678, 697, 770, 924, 1135
MlyI	GAGTC	3 cut(s)	232, 347, 994
MmeI	TCCRAC	2 cut(s)	867, 886
MnlI	CCTC	8 cut(s)	18, 107, 324, 331, 431, 577, 755, 832
MseI	TTAA	3 cut(s)	53, 192, 773
MspI	CCGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	926
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	4 cut(s)	36, 409, 415, 1000
NlaIII	CATG	6 cut(s)	373, 608, 659, 900, 1090, 1130
NlaIV	GGNNCC	4 cut(s)	289, 312, 708, 743
NmuCI	GTSAC	1 cut(s)	614
NspV	TTCGAA	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	124
PaqCI	CACCTGC	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	231, 459, 576
PleI	GAGTC	3 cut(s)	232, 347, 993
PpsI	GAGTC	3 cut(s)	232, 347, 993
PpuMI	RGGWCCY	1 cut(s)	741
Psp1406I	AACGTT	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	741
PspN4I	GGNNCC	4 cut(s)	289, 312, 708, 743
PspPI	GGNCC	1 cut(s)	741
PspPPI	RGGWCCY	1 cut(s)	741
PstI	CTGCAG	1 cut(s)	216
PsuI	RGATCY	2 cut(s)	409, 415
RsaI	GTAC	3 cut(s)	87, 781, 1098
RsaNI	GTAC	3 cut(s)	86, 780, 1097
SaqAI	TTAA	3 cut(s)	53, 192, 773
SatI	GCNGC	3 cut(s)	230, 458, 575
Sau3AI	GATC	4 cut(s)	36, 409, 415, 1000
Sau96I	GGNCC	1 cut(s)	741
ScaI	AGTACT	1 cut(s)	781
SchI	GAGTC	3 cut(s)	232, 347, 994
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	4 cut(s)	183, 261, 439, 598
SfcI	CTRYAG	2 cut(s)	212, 867
Sfr274I	CTCGAG	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	115
SinI	GGWCC	1 cut(s)	741
SlaI	CTCGAG	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	8 cut(s)	48, 182, 488, 678, 697, 770, 924, 1135
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	5 cut(s)	170, 470, 537, 612, 1109
StyI	CCWWGG	1 cut(s)	980
TaaI	ACNGT	4 cut(s)	551, 859, 904, 1050
TaiI	ACGT	3 cut(s)	20, 497, 726
TaqI	TCGA	4 cut(s)	115, 125, 676, 811
TasI	AATT	8 cut(s)	48, 182, 488, 678, 697, 770, 924, 1135
TatI	WGTACW	3 cut(s)	85, 779, 1096
TauI	GCSGC	1 cut(s)	232
Tru1I	TTAA	3 cut(s)	53, 192, 773
Tru9I	TTAA	3 cut(s)	53, 192, 773
TscAI	CASTG	1 cut(s)	907
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	2 cut(s)	457, 574
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	4 cut(s)	75, 174, 962, 1134
TspGWI	ACGGA	1 cut(s)	866
TspRI	CASTG	1 cut(s)	907
VpaK11BI	GGWCC	1 cut(s)	741
XagI	CCTNNNNNAGG	1 cut(s)	811
XapI	RAATTY	3 cut(s)	48, 182, 697
XbaI	TCTAGA	1 cut(s)	1108
XhoI	CTCGAG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	5 cut(s)	170, 470, 537, 612, 1109
ZraI	GACGTC	1 cut(s)	495
ZrmI	AGTACT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.