Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Reverse (-)

3016747 .. 3017431

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAAGACTCGGTGCAACCAGAAAGTCAGAGTTTTCAGATTACAAGAGAAGAGCGTAGTCTAGGAAACTTAGAAGCTGACATGGAGAATCAGAAAAATGTTCCATTTTCTCAAGAAGAATCCTTGGGCCTTGATGTGCTTTGTGGAGCCAAGAAACCTCGAGAACTTTTTTGTTCATATGGAGAAGAGAATCATAATGATGAAGAGCCGACTAAGTTACAGGACATGATTGCACCAGATACCATAAAAAGTATTCTGGAAGAAGATCCAGATCCCCTCTCAGTTGCATATGATGGCAGTCCTGATGCCAAGCAGCCATATAATCTAGGTTTTACTACACCAAAATTGACGTCTGTTCCCAGACCAGCTTCCAAGAAATCGGCTTGGATTTCTAGGAAAAGAAACTGTGTCTTTGATGATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

141

Amino Acids

15.85

Weight (kDa)

4.52

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	353
AclWI	GGATC	2 cut(s)	260, 266
AcyI	GRCGYC	1 cut(s)	350
AluBI	AGCT	2 cut(s)	77, 368
AluI	AGCT	2 cut(s)	77, 368
AlwI	GGATC	2 cut(s)	260, 266
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	313
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspS9I	GGNCC	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	287
BfaI	CTAG	3 cut(s)	62, 326, 393
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	148
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	123
Bse8I	GATNNNNATC	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	123
BseJI	GATNNNNATC	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	159
BsnI	GGCC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	265, 271
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	148
BspPI	GGATC	2 cut(s)	260, 266
BspQI	GCTCTTC	2 cut(s)	45, 198
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	265, 271
BssNI	GRCGYC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	3 cut(s)	45, 180, 198
BstACI	GRCGYC	1 cut(s)	350
BstDEI	CTNAG	3 cut(s)	70, 213, 280
BstKTI	GATC	2 cut(s)	268, 274
BstMBI	GATC	2 cut(s)	265, 271
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	2 cut(s)	265, 271
BstYI	RGATCY	2 cut(s)	265, 271
BsuRI	GGCC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	127
CviAII	CATG	2 cut(s)	82, 226
CviJI	RGCY	7 cut(s)	77, 129, 149, 208, 316, 368, 383
CviKI_1	RGCY	7 cut(s)	77, 129, 149, 208, 316, 368, 383
DdeI	CTNAG	3 cut(s)	70, 213, 280
DpnI	GATC	2 cut(s)	267, 273
DpnII	GATC	2 cut(s)	265, 271
Eam1104I	CTCTTC	3 cut(s)	45, 180, 198
EarI	CTCTTC	3 cut(s)	45, 180, 198
Eco130I	CCWWGG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	2 cut(s)	85, 229
FatI	CATG	2 cut(s)	81, 225
FauNDI	CATATG	2 cut(s)	178, 289
Fnu4HI	GCNGC	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	3 cut(s)	62, 326, 393
GluI	GCNGC	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	2 cut(s)	85, 229
HinfI	GANTC	4 cut(s)	8, 88, 119, 190
Hpy188I	TCNGA	3 cut(s)	30, 39, 93
Hpy188III	TCNNGA	5 cut(s)	113, 161, 257, 269, 302
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	3 cut(s)	16, 233, 287
HpyF3I	CTNAG	3 cut(s)	70, 213, 280
HpySE526I	ACGT	1 cut(s)	350
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	2 cut(s)	85, 229
Kzo9I	GATC	2 cut(s)	265, 271
LguI	GCTCTTC	2 cut(s)	45, 198
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	8 cut(s)	33, 206, 242, 249, 282, 315, 373, 378
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	3 cut(s)	62, 326, 393
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	2 cut(s)	267, 273
MboI	GATC	2 cut(s)	265, 271
MboII	GAAGA	7 cut(s)	17, 62, 128, 197, 215, 272, 275
MflI	RGATCY	2 cut(s)	265, 271
MluCI	AATT	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	2 cut(s)	168, 287
MslI	CAYNNNNRTG	1 cut(s)	198
NdeI	CATATG	2 cut(s)	178, 289
NdeII	GATC	2 cut(s)	265, 271
NlaIII	CATG	2 cut(s)	85, 229
NlaIV	GGNNCC	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	159
PciSI	GCTCTTC	2 cut(s)	45, 198
PfeI	GAWTC	3 cut(s)	88, 119, 190
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	265, 271
RseI	CAYNNNNRTG	1 cut(s)	198
SapI	GCTCTTC	2 cut(s)	45, 198
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	2 cut(s)	265, 271
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	2
SetI	ASST	5 cut(s)	79, 160, 331, 353, 370
SfaNI	GCATC	1 cut(s)	295
Sfr274I	CTCGAG	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	111, 159
SmoI	CTYRAG	2 cut(s)	111, 159
Sse9I	AATT	1 cut(s)	344
SspMI	CTAG	3 cut(s)	62, 326, 393
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	344
TfiI	GAWTC	3 cut(s)	88, 119, 190
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	165, 216
XhoI	CTCGAG	1 cut(s)	159
XspI	CTAG	3 cut(s)	62, 326, 393
ZraI	GACGTC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.