Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

9288152 .. 9292039

Gene Structure 3888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G005810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGATGGAAATGGACTTGGTGCAACCAGAAAATCAGAGCTTTCGGATTACAAGAGAAGAGCATAGTCTAAGAAACTTAGAAGCTGACATGGAGAATCTGAAAAATATTACATTTTCTCAAGAAGAGTCCCTGGGCCTTGATATGCTTTGTGGGACCAAGAAACCTCAAGAACTTACCAGCTTCCAAGAAGTCGGCTCGGATTCTCAGGAAAGAAAATGTGTGTTTGATGATATAGTAGTACTGCCTAATGTGGAAATCAGGCAAAGCATACATGATGCTAGTGACTTGGTTGCTAAAAGAAAAAAAGTTCCCAAAAATGCCCATGTTGTTTGGAAAACTGAAGTAAAGTTAGATTTGTTGGACTGTCGAAGGACTGGTATATCAGAGCAAATAGAGGTTGTAGATACGGAAACTGTTGAACCTCCAGAAGACTTAAATGTGTTGGAATATCCATGTACTGTTGGATTAGAACATGCTGAAATTGCACCAGACACACCTATTCTTCGCTCAAAATCAATCAAATCATTTCATAGTCCAAGGAGTCCTGAAGTTCCTGATATGGATCTAGTAAGACCTGAGACATCTGGAAGGATAGAAAAAGAACCATTTTTGGGAGCAGAGCAAACTTTCCCCTCTGGAAGTGTTAGAAGAATTAGCATGTCTTTTTTTTTTTTTTTTTTCTTTTATATGTTTGAAATTTGTGAAGGAGTTAATCCTGAACTCAATGGGTGTTCTGTGAGAACCAGTCGTGGAGAGGACGAAGTGAACTTGTTGGAGGTTGCAAAACGAAGAACCAGGAAAGAAAGTGCAAGGCTATTCTATGAGACACTTCTGTTCCGGACCCGGGTTCTGATTATGTTCTTGTGCCCGAGCGATGTATTTGGTAAGCTGCTTCTATATAGGATATTTGGTATTTCAATTACTTTGAAATATTACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

313

Amino Acids

36.02

Weight (kDa)

5.17

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	837
AclWI	GGATC	1 cut(s)	570
AcsI	RAATTY	1 cut(s)	696
AcuI	CTGAAG	2 cut(s)	360, 567
AfaI	GTAC	2 cut(s)	240, 457
AfiI	CCNNNNNNNGG	2 cut(s)	611, 844
AgsI	TTSAA	4 cut(s)	419, 695, 918, 928
AjnI	CCWGG	2 cut(s)	129, 794
AluBI	AGCT	4 cut(s)	39, 83, 180, 889
AluI	AGCT	4 cut(s)	39, 83, 180, 889
Alw26I	GTCTC	2 cut(s)	572, 818
AlwI	GGATC	1 cut(s)	570
Ama87I	CYCGRG	2 cut(s)	843, 868
Aor13HI	TCCGGA	1 cut(s)	837
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	889
ApoI	RAATTY	1 cut(s)	696
AspS9I	GGNCC	3 cut(s)	133, 153, 840
AsuC2I	CCSGG	2 cut(s)	844, 845
AvaI	CYCGRG	2 cut(s)	843, 868
AvaII	GGWCC	2 cut(s)	153, 840
BaeGI	GKGCMC	1 cut(s)	869
BbsI	GAAGAC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	876
BciT130I	CCWGG	2 cut(s)	131, 796
BcnI	CCSGG	2 cut(s)	844, 845
BcoDI	GTCTC	2 cut(s)	572, 818
BfaI	CTAG	2 cut(s)	279, 566
BisI	GCNGC	1 cut(s)	890
BlsI	GCNGC	1 cut(s)	891
BmcAI	AGTACT	1 cut(s)	240
Bme1390I	CCNGG	4 cut(s)	131, 796, 844, 845
Bme18I	GGWCC	2 cut(s)	153, 840
BmeT110I	CYCGRG	2 cut(s)	843, 868
BmgT120I	GGNCC	3 cut(s)	133, 153, 840
BmiI	GGNNCC	2 cut(s)	154, 842
BmrFI	CCNGG	4 cut(s)	131, 796, 844, 845
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	408
BpuEI	CTTGAG	2 cut(s)	102, 150
BpuMI	CCSGG	2 cut(s)	844, 845
BsaBI	GATNNNNATC	1 cut(s)	561
BsaJI	CCNNGG	4 cut(s)	129, 130, 536, 843
BsaWI	WCCGGW	1 cut(s)	837
Bsc4I	CCNNNNNNNGG	2 cut(s)	611, 844
Bse1I	ACTGG	2 cut(s)	379, 744
Bse8I	GATNNNNATC	1 cut(s)	561
BseAI	TCCGGA	1 cut(s)	837
BseBI	CCWGG	2 cut(s)	131, 796
BseDI	CCNNGG	4 cut(s)	129, 130, 536, 843
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	2 cut(s)	611, 844
BseMII	CTCAG	2 cut(s)	218, 567
BseNI	ACTGG	2 cut(s)	379, 744
BseSI	GKGCMC	1 cut(s)	869
BseXI	GCAGC	1 cut(s)	876
BshFI	GGCC	1 cut(s)	135
BsiHKCI	CYCGRG	2 cut(s)	843, 868
BsiSI	CCGG	2 cut(s)	838, 844
BslFI	GGGAC	2 cut(s)	112, 166
BslI	CCNNNNNNNGG	2 cut(s)	611, 844
BsmAI	GTCTC	2 cut(s)	572, 818
BsmFI	GGGAC	2 cut(s)	112, 166
BsnI	GGCC	1 cut(s)	135
BsoBI	CYCGRG	2 cut(s)	843, 868
Bsp1286I	GDGCHC	1 cut(s)	869
Bsp13I	TCCGGA	1 cut(s)	837
Bsp143I	GATC	1 cut(s)	562
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	2 cut(s)	217, 568
BspEI	TCCGGA	1 cut(s)	837
BspLI	GGNNCC	2 cut(s)	154, 842
BspPI	GGATC	1 cut(s)	570
BspQI	GCTCTTC	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	379, 744
BssECI	CCNNGG	4 cut(s)	129, 130, 536, 843
BssMI	GATC	1 cut(s)	562
BssT1I	CCWWGG	1 cut(s)	536
Bst2UI	CCWGG	2 cut(s)	131, 796
Bst4CI	ACNGT	4 cut(s)	365, 415, 460, 938
Bst6I	CTCTTC	2 cut(s)	51, 117
BstDEI	CTNAG	4 cut(s)	68, 76, 204, 576
BstKTI	GATC	1 cut(s)	565
BstMAI	GTCTC	2 cut(s)	572, 818
BstMBI	GATC	1 cut(s)	562
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	2 cut(s)	131, 796
BstNSI	RCATGY	2 cut(s)	476, 661
BstSCI	CCNGG	4 cut(s)	129, 794, 842, 843
BstSLI	GKGCMC	1 cut(s)	869
BstV1I	GCAGC	1 cut(s)	876
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	888
Cfr13I	GGNCC	3 cut(s)	133, 153, 840
Cfr9I	CCCGGG	1 cut(s)	843
Csp6I	GTAC	2 cut(s)	239, 456
CviAII	CATG	6 cut(s)	88, 272, 323, 453, 473, 658
CviJI	RGCY	7 cut(s)	39, 83, 135, 180, 195, 814, 889
CviKI_1	RGCY	7 cut(s)	39, 83, 135, 180, 195, 814, 889
CviQI	GTAC	2 cut(s)	239, 456
DdeI	CTNAG	4 cut(s)	68, 76, 204, 576
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
Eam1104I	CTCTTC	2 cut(s)	51, 117
EarI	CTCTTC	2 cut(s)	51, 117
Eco130I	CCWWGG	1 cut(s)	536
Eco47I	GGWCC	2 cut(s)	153, 840
Eco57I	CTGAAG	2 cut(s)	360, 567
Eco88I	CYCGRG	2 cut(s)	843, 868
EcoRII	CCWGG	2 cut(s)	129, 794
EcoT14I	CCWWGG	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	6 cut(s)	91, 275, 326, 456, 476, 661
FaqI	GGGAC	2 cut(s)	112, 166
FatI	CATG	6 cut(s)	87, 271, 322, 452, 472, 657
Fnu4HI	GCNGC	1 cut(s)	890
Fsp4HI	GCNGC	1 cut(s)	890
FspBI	CTAG	2 cut(s)	279, 566
GluI	GCNGC	1 cut(s)	890
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	2 cut(s)	838, 844
Hin1II	CATG	6 cut(s)	91, 275, 326, 456, 476, 661
HinfI	GANTC	4 cut(s)	94, 125, 200, 541
HpaII	CCGG	2 cut(s)	838, 844
Hpy166II	GTNNAC	1 cut(s)	766
Hpy188I	TCNGA	6 cut(s)	36, 45, 99, 199, 385, 852
Hpy8I	GTNNAC	1 cut(s)	766
HpyAV	CCTTC	3 cut(s)	363, 582, 698
HpyCH4III	ACNGT	4 cut(s)	365, 415, 460, 938
HpyCH4V	TGCA	4 cut(s)	22, 485, 782, 809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	4 cut(s)	68, 76, 204, 576
Hsp92II	CATG	6 cut(s)	91, 275, 326, 456, 476, 661
Kpn2I	TCCGGA	1 cut(s)	837
Kzo9I	GATC	1 cut(s)	562
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	1 cut(s)	876
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	279, 566
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	1 cut(s)	564
MboI	GATC	1 cut(s)	562
MboII	GAAGA	6 cut(s)	68, 134, 440, 494, 660, 801
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	1 cut(s)	869
MluCI	AATT	4 cut(s)	480, 651, 696, 918
MlyI	GAGTC	2 cut(s)	134, 550
MmeI	TCCRAC	4 cut(s)	339, 423, 442, 753
MnlI	CCTC	6 cut(s)	174, 388, 432, 643, 748, 769
MroI	TCCGGA	1 cut(s)	837
MseI	TTAA	2 cut(s)	434, 711
MspI	CCGG	2 cut(s)	838, 844
MspR9I	CCNGG	4 cut(s)	131, 796, 844, 845
MvaI	CCWGG	2 cut(s)	131, 796
MwoI	GCNNNNNNNGC	1 cut(s)	482
NciI	CCSGG	2 cut(s)	844, 845
NdeII	GATC	1 cut(s)	562
NlaIII	CATG	6 cut(s)	91, 275, 326, 456, 476, 661
NlaIV	GGNNCC	2 cut(s)	154, 842
NmuCI	GTSAC	1 cut(s)	281
NspI	RCATGY	2 cut(s)	476, 661
PasI	CCCWGGG	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	94, 200
PkrI	GCNGC	1 cut(s)	891
PleI	GAGTC	2 cut(s)	133, 549
PpsI	GAGTC	2 cut(s)	133, 549
Psp6I	CCWGG	2 cut(s)	129, 794
PspGI	CCWGG	2 cut(s)	129, 794
PspN4I	GGNNCC	2 cut(s)	154, 842
PspPI	GGNCC	3 cut(s)	133, 153, 840
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	2 cut(s)	240, 457
RsaNI	GTAC	2 cut(s)	239, 456
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	434, 711
SatI	GCNGC	1 cut(s)	890
Sau3AI	GATC	1 cut(s)	562
Sau96I	GGNCC	3 cut(s)	133, 153, 840
ScaI	AGTACT	1 cut(s)	240
SchI	GAGTC	2 cut(s)	134, 550
ScrFI	CCNGG	4 cut(s)	131, 796, 844, 845
SduI	GDGCHC	1 cut(s)	869
SfaNI	GCATC	1 cut(s)	265
SinI	GGWCC	2 cut(s)	153, 840
SmaI	CCCGGG	1 cut(s)	845
SmlI	CTYRAG	2 cut(s)	117, 165
SmoI	CTYRAG	2 cut(s)	117, 165
Sse9I	AATT	4 cut(s)	480, 651, 696, 918
SspI	AATATT	2 cut(s)	106, 932
SspMI	CTAG	2 cut(s)	279, 566
StyD4I	CCNGG	4 cut(s)	129, 794, 842, 843
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	4 cut(s)	365, 415, 460, 938
TaqI	TCGA	1 cut(s)	367
TasI	AATT	4 cut(s)	480, 651, 696, 918
TatI	WGTACW	2 cut(s)	238, 455
TfiI	GAWTC	2 cut(s)	94, 200
Tru1I	TTAA	2 cut(s)	434, 711
Tru9I	TTAA	2 cut(s)	434, 711
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	889
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	518
TspGWI	ACGGA	1 cut(s)	422
TspMI	CCCGGG	1 cut(s)	843
VpaK11BI	GGWCC	2 cut(s)	153, 840
XapI	RAATTY	1 cut(s)	696
XceI	RCATGY	2 cut(s)	476, 661
XmaI	CCCGGG	1 cut(s)	843
XspI	CTAG	2 cut(s)	279, 566
ZrmI	AGTACT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.