Rh2BG645700

Sister chromatid cohesion 1 protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
86533383 .. 86536618
3236 bp
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UTR
Exon/CDS
Intron
Rh2BG645700.1

Sequence Viewer

Length: 519 bp
ATGTATGAGGAAGCTGAATTTTGCGAAGGATTTAATCCTGAACTCGATGGGTTTTCAGTGAGAACCAGAAAGGTGGCGAGGTACTTGCACAGGCACTTTACAGTTTGCAACAGTTGTAGAGAGGAAGAAGTGAACTTGTTGGAGGTTGCAGAACGAAGAACCAAGAAAGAAAGTGCAATGCTATTCTATGAGACACTGGTGATGAAAACTAGAGGGTTTGTGGATGTGAAGCGAGCTGATCGCTATTCTATTCTGGAAACGTCCCAAATGGGAGCAAATCTCAAGAAGGCCCAGGTCACTGAAACTGACATCTCAGCCTCTATTGATAAAATTTTGAAGGATGATTGGGATGTCATCGCATATAGGGTACTGGCCTACCTTCTTCTTGGTGTTGTTCGGATATACTCGAAAAAAGTTGAATACCTTTTTGATGTCTGCCATGAGGTGCTAACTGAAATCAACAAGTTTGTCATTAGCACAAAAGAGAAGGGAGACACAGATACGTTTCTTGCGCCTTAG

Protein Analysis

172

Amino Acids

19.98

Weight (kDa)

5.73

Isoelectric Point (pI)

29.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad21_Rec8 PF04824 42 - 78 2e-07 Conserved region of Rad21 / Rec8 like protein
Rad21_Rec8_N PF04825 89 - 163 6.7e-16 N terminus of Rad21 / Rec8 like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 17, 330
AfaI GTAC 2 cut(s) 83, 369
AgsI TTSAA 2 cut(s) 337, 419
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 2 cut(s) 14, 236
AluI AGCT 2 cut(s) 14, 236
Alw26I GTCTC 2 cut(s) 185, 486
AoxI GGCC 2 cut(s) 288, 372
ApoI RAATTY 2 cut(s) 17, 330
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 211
BccI CCATC 1 cut(s) 41
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 1 cut(s) 293
BcoDI GTCTC 2 cut(s) 185, 486
BfaI CTAG 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 293
BplI GAGNNNNNCTC 2 cut(s) 264, 296
BpuEI CTTGAG 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 291
Bse1I ACTGG 2 cut(s) 201, 375
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 3 cut(s) 229, 346, 355
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 201, 375
BshFI GGCC 2 cut(s) 290, 374
BslFI GGGAC 1 cut(s) 247
BsmAI GTCTC 2 cut(s) 185, 486
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 2 cut(s) 290, 374
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 2 cut(s) 290, 374
BspCNI CTCAG 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 2 cut(s) 201, 375
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 2 cut(s) 103, 113
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 313, 516
BstF5I GGATG 3 cut(s) 229, 346, 355
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 2 cut(s) 185, 486
BstMBI GATC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstXI CCANNNNNNTGG 1 cut(s) 73
BsuRI GGCC 2 cut(s) 290, 374
BtgZI GCGATG 1 cut(s) 340
BtsCI GGATG 3 cut(s) 229, 346, 355
BtsIMutI CAGTG 3 cut(s) 63, 194, 297
Cac8I GCNNGC 1 cut(s) 234
CfoI GCGC 1 cut(s) 514
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 2 cut(s) 82, 368
CviAII CATG 1 cut(s) 440
CviJI RGCY 5 cut(s) 14, 236, 290, 317, 374
CviKI_1 RGCY 5 cut(s) 14, 236, 290, 317, 374
CviQI GTAC 2 cut(s) 82, 368
DdeI CTNAG 2 cut(s) 313, 516
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 291
FaeI CATG 1 cut(s) 443
FaiI YATR 6 cut(s) 6, 189, 361, 363, 403, 441
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 439
FokI GGATG 3 cut(s) 236, 353, 362
FspBI CTAG 1 cut(s) 210
GlaI GCGC 1 cut(s) 513
HaeIII GGCC 2 cut(s) 290, 374
HhaI GCGC 1 cut(s) 514
Hin1II CATG 1 cut(s) 443
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 399
Hpy188III TCNNGA 3 cut(s) 38, 254, 283
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 5 cut(s) 20, 280, 331, 389, 481
HpyCH4III ACNGT 2 cut(s) 103, 113
HpyCH4IV ACGT 2 cut(s) 260, 503
HpyCH4V TGCA 4 cut(s) 88, 108, 149, 176
HpyF3I CTNAG 2 cut(s) 313, 516
HpySE526I ACGT 2 cut(s) 260, 503
Hsp92II CATG 1 cut(s) 443
HspAI GCGC 1 cut(s) 512
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 8 cut(s) 51, 76, 79, 182, 239, 278, 305, 356
MaeI CTAG 1 cut(s) 210
MaeII ACGT 2 cut(s) 260, 503
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 3 cut(s) 137, 168, 374
MluCI AATT 2 cut(s) 17, 330
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 6 cut(s) 72, 115, 136, 206, 328, 436
MseI TTAA 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 443
NmuCI GTSAC 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspPI GGNCC 1 cut(s) 289
RsaI GTAC 2 cut(s) 83, 369
RsaNI GTAC 2 cut(s) 82, 368
SaqAI TTAA 1 cut(s) 33
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 17, 330
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 103, 113
TaiI ACGT 2 cut(s) 263, 506
TaqI TCGA 2 cut(s) 45, 407
TasI AATT 2 cut(s) 17, 330
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 3 cut(s) 63, 201, 304
TseFI GTSAC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 218
TspRI CASTG 3 cut(s) 63, 201, 304
XapI RAATTY 2 cut(s) 17, 330
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.