Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Reverse (-)

82373412 .. 82378068

Gene Structure 4657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2184 bp

ATGTTTTACTCACAGTGTCTCTTATCAAGAAAAGGGCGTTTAGGCTCCATATGGGTTGCTGCTTATTGTTTCAAAAAGCTCAAGAAGGCCCAGGTCGCTGAAACTGACATTTCAGCCTCTATTGATAAAATTTTGAAGGATGATTGGGATGTCATTGCATATAGGGTACTAGCCTACCTTCTTCTTGGTGTTGTTCGAATATACTCCAAAAAAGTTGAATACCTTTTTGATGACTGCCACGAAGTGCTAACTGAAATCAACAAGTTTTTTGTTAGCACAAAAGAGAAGGGAGACACAGATACATTTTGTGCGCCTTATGACTCTGTTACCCTACCAGAGAGGTTTGAACTTGATGCATTTGATTTGGGGCTCCCTGAAGATGTCAGTGGAGGAAATGTAGTATCCTATGAATATGATTACGAGGAATTTGGTGCCTGCCGTGGTATCTTTTCTGCCAATTACATTCCAGGCAGGGATGTACTTTCATTTGACGGGATGGAATTGGATATGGAGTTAAGGACGTCGAGGAGTGGAGCTAACCCAGAAGTAAACATGGAGAATCCTCAAGAGAGTAGGTTCTCTCAAGTAGAAACTAATGGAGAACAGATAAAGGTTCCGGATATAGCATTGCCTGAAGATGGGAATCTAGGAGAAGCAAGGCAGGAAAAGCTTCCAGACCTCAGGTCTGAGGAAAAAGGTCTGAACCATGAAACATTTTTCGGCATTGAAGAAGAGCCCCTAAACCAAGTTGAACCATTTGGTGAAGATCATGAAACTAATGGGGAGCAAATAAAGGCTCCTGCTGTAGTCCAGTCTGTTGATGGAATTCAAGAAGAAGCAAGCGTGGAACCTTCCTGTCATGTTACATCATCTGGTGAAGATCACCACATTATTCGAGAGGAGATTATCATGCAATCAGAAAATCAAATGTGTCCAGTTACAAGAGAGGACCACAATCTAAGCAACTTGGAAGCTGACAGGGGAGACCTGAAAAGTTGTACACCTGCTCAAGAAGAGAACATGGACCTTGATAAGTCTTGTGACTTAAAGAAACCTCAAAAACCTGTTTGTTCATATGGGGAAGAGAATCATAAGGATGGAGAGCCAACAAAGTTACAGGACACGATTCCACCAGATAATGTGAATTGTCAAATTACTGCTGGAAAAGATTCAGAGGCTTTAGTGGTTACTACACCAAAGTTAAGGAGGGTTATTCCCACACCAGCTATGAGGAAGGCTGCTCAAATCTCTAGGAAAAGGAAATGGAAATGTACCTTTGATGAAATGGTAGTGCTGCCTAATACGGTAATCAAGCAAAGCATAAATGATGCGAGTGACTTGGTTTCAAAAAGAAGAAAGGTTCCTGAAACTGCCCTTGCTGCCTGGAAAACCTGTCAGCTTAGAAACCTATCCCGGAATTTCTTGGAACCATTGATACCTAGTGTTTCAGAGGAGCTTAGGTCGCTCTTCCACAAAAGCATAATAGAATCTGCTGAAGCTGTTGAACCTCCAGAAAAGCTAGATGTGTTAGAACCTCCCAGTACTGGGAGACCAGAGCAAGTAGAAATCGCACCAGGGCCACCTGTCCTTGAGCAAATAGAAATTGAGCCTGGAACCCCTATCCTTGAGAAAATAGAAATTGCACCAGGAACGCCTGTCCTTCACTCAACATCAATGAAATCATTCAATAGACCAAAGAGCCCCGAAGCTCCTGATATGGATATGGTGATACCTGAGCCATCCGGAAGGATAGAGGAAGAGCCATCTATGGGAAATGAACAAGCTTACCCATCTGAAAGTGTAGAAGTACCATCTTTGGACAAGGTTCAAGAGCATGATTTCAATTTATTGAATGAGGAACCTGATTTATGCGAGGGTGTTAACCCTGAACTGGATGGGTGGTCAAAGAGAACCAGAGTGGTTGCAAGGTACTTGCATAGAGAATTCACAAATTGTAAAAATCGAGGAGAGGAGGAAGTGAACTTGTTGCAGGTTTCAGAAGGAAAAACCAAGAAAGAAAGTGCAAGGTTGTTCTATGAGACACTGGTGTTGAAAACTAATGGGTATGTGGATGTGAAGCAAGATGAAGCCTATGGTGACATTGTACTCCGTAAGCTCCACAAATGGGATCAAACATGGGAAGACGATATGGTCAACAGAGACAGCTTCGTACCTATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

728

Amino Acids

82.04

Weight (kDa)

4.71

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	1 - 96	9.1e-27	N terminus of Rad21 / Rec8 like protein
Rad21_Rec8	PF04824	657 - 704	4.3e-18	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1012
AasI	GACNNNNNNGTC	1 cut(s)	2150
AatII	GACGTC	1 cut(s)	524
Acc36I	ACCTGC	2 cut(s)	1012, 1981
AccB1I	GGYRCC	1 cut(s)	431
AccIII	TCCGGA	2 cut(s)	616, 1742
AclWI	GGATC	1 cut(s)	2136
AcsI	RAATTY	5 cut(s)	129, 425, 825, 1417, 1943
AcuI	CTGAAG	3 cut(s)	396, 654, 1515
AcyI	GRCGYC	1 cut(s)	521
AdeI	CACNNNGTG	1 cut(s)	244
AfaI	GTAC	9 cut(s)	168, 480, 1000, 1273, 1543, 1809, 1931, 2106, 2172
AfiI	CCNNNNNNNGG	6 cut(s)	638, 1544, 1545, 1769, 1891, 2125
AhdI	GACNNNNNGTC	1 cut(s)	682
AjnI	CCWGG	6 cut(s)	90, 466, 1382, 1573, 1609, 1645
Alw26I	GTCTC	6 cut(s)	23, 285, 978, 1543, 2033, 2154
AlwI	GGATC	1 cut(s)	2136
Aor13HI	TCCGGA	2 cut(s)	616, 1742
AoxI	GGCC	2 cut(s)	87, 1577
ApeKI	GCWGC	4 cut(s)	59, 1238, 1294, 1379
ApoI	RAATTY	5 cut(s)	129, 425, 825, 1417, 1943
Asp700I	GAANNNNTTC	3 cut(s)	669, 1168, 1682
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	4 cut(s)	88, 949, 1024, 1577
AsuC2I	CCSGG	1 cut(s)	1414
AsuHPI	GGTGA	5 cut(s)	773, 875, 887, 1738, 2108
AsuII	TTCGAA	1 cut(s)	196
AvaII	GGWCC	2 cut(s)	949, 1024
AxyI	CCTNAGG	1 cut(s)	680
BanI	GGYRCC	1 cut(s)	431
BanII	GRGCYC	3 cut(s)	372, 738, 1703
BbsI	GAAGAC	1 cut(s)	2148
BbvI	GCAGC	4 cut(s)	46, 1225, 1281, 1366
BccI	CCATC	9 cut(s)	490, 632, 815, 1091, 1747, 1771, 1798, 1819, 1889
BceAI	ACGGC	1 cut(s)	423
BciT130I	CCWGG	6 cut(s)	92, 468, 1384, 1575, 1611, 1647
BciVI	GTATCC	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	1414
BcoDI	GTCTC	6 cut(s)	23, 285, 978, 1543, 2033, 2154
BfaI	CTAG	5 cut(s)	170, 647, 1251, 1440, 1520
BfmI	CTRYAG	1 cut(s)	804
BfuAI	ACCTGC	2 cut(s)	1012, 1981
BfuI	GTATCC	1 cut(s)	412
BisI	GCNGC	4 cut(s)	60, 1239, 1295, 1380
BlsI	GCNGC	4 cut(s)	61, 1240, 1296, 1381
BmcAI	AGTACT	1 cut(s)	1543
Bme1390I	CCNGG	7 cut(s)	92, 468, 1384, 1414, 1575, 1611, 1647
Bme18I	GGWCC	2 cut(s)	949, 1024
BmeRI	GACNNNNNGTC	1 cut(s)	682
BmgT120I	GGNCC	4 cut(s)	88, 949, 1024, 1577
BmrFI	CCNGG	7 cut(s)	92, 468, 1384, 1414, 1575, 1611, 1647
BmrI	ACTGGG	2 cut(s)	1533, 1554
BmsI	GCATC	2 cut(s)	343, 1318
BmuI	ACTGGG	2 cut(s)	1533, 1554
BpiI	GAAGAC	1 cut(s)	2148
BpmI	CTGGAG	1 cut(s)	1494
Bpu10I	CCTNAGC	2 cut(s)	1457, 1734
Bpu14I	TTCGAA	1 cut(s)	196
BpuEI	CTTGAG	6 cut(s)	65, 549, 567, 993, 1610, 1646
BpuMI	CCSGG	1 cut(s)	1414
BsaBI	GATNNNNATC	1 cut(s)	642
BsaHI	GRCGYC	1 cut(s)	521
BsaI	GGTCTC	2 cut(s)	978, 1543
BsaJI	CCNNGG	3 cut(s)	90, 439, 1574
BsaWI	WCCGGW	2 cut(s)	616, 1742
BsaXI	ACNNNNNCTCC	4 cut(s)	381, 411, 1445, 1475
Bsc4I	CCNNNNNNNGG	6 cut(s)	638, 1544, 1545, 1769, 1891, 2125
Bse1I	ACTGG	6 cut(s)	811, 935, 1539, 1549, 1896, 2049
Bse21I	CCTNAGG	1 cut(s)	680
Bse3DI	GCAATG	2 cut(s)	153, 626
Bse8I	GATNNNNATC	1 cut(s)	642
BseAI	TCCGGA	2 cut(s)	616, 1742
BseBI	CCWGG	6 cut(s)	92, 468, 1384, 1575, 1611, 1647
BseDI	CCNNGG	3 cut(s)	90, 439, 1574
BseGI	GGATG	8 cut(s)	145, 154, 481, 501, 1102, 1739, 1900, 2077
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	6 cut(s)	638, 1544, 1545, 1769, 1891, 2125
BseMI	GCAATG	2 cut(s)	153, 626
BseMII	CTCAG	3 cut(s)	678, 694, 1725
BseNI	ACTGG	6 cut(s)	811, 935, 1539, 1549, 1896, 2049
BseRI	GAGGAG	5 cut(s)	541, 914, 1466, 1980, 1985
BseXI	GCAGC	4 cut(s)	46, 1225, 1281, 1366
BshFI	GGCC	2 cut(s)	89, 1579
BshNI	GGYRCC	1 cut(s)	431
BsiSI	CCGG	3 cut(s)	617, 1414, 1743
BslI	CCNNNNNNNGG	6 cut(s)	638, 1544, 1545, 1769, 1891, 2125
BsmAI	GTCTC	6 cut(s)	23, 285, 978, 1543, 2033, 2154
BsnI	GGCC	2 cut(s)	89, 1579
Bso31I	GGTCTC	2 cut(s)	978, 1543
Bsp119I	TTCGAA	1 cut(s)	196
Bsp1286I	GDGCHC	3 cut(s)	372, 738, 1703
Bsp13I	TCCGGA	2 cut(s)	616, 1742
Bsp1407I	TGTACA	1 cut(s)	998
Bsp143I	GATC	3 cut(s)	766, 880, 2128
BspANI	GGCC	2 cut(s)	89, 1579
BspCNI	CTCAG	3 cut(s)	679, 693, 1726
BspEI	TCCGGA	2 cut(s)	616, 1742
BspHI	TCATGA	1 cut(s)	769
BspMI	ACCTGC	2 cut(s)	1012, 1981
BspPI	GGATC	1 cut(s)	2136
BspQI	GCTCTTC	3 cut(s)	726, 1472, 1752
BspT104I	TTCGAA	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	431
BspTNI	GGTCTC	2 cut(s)	978, 1543
BsrDI	GCAATG	2 cut(s)	153, 626
BsrGI	TGTACA	1 cut(s)	998
BsrI	ACTGG	6 cut(s)	811, 935, 1539, 1549, 1896, 2049
BssECI	CCNNGG	3 cut(s)	90, 439, 1574
BssMI	GATC	3 cut(s)	766, 880, 2128
BssNI	GRCGYC	1 cut(s)	521
Bst2UI	CCWGG	6 cut(s)	92, 468, 1384, 1575, 1611, 1647
Bst4CI	ACNGT	2 cut(s)	15, 1306
Bst6I	CTCTTC	5 cut(s)	726, 1008, 1077, 1472, 1752
BstACI	GRCGYC	1 cut(s)	521
BstAUI	TGTACA	1 cut(s)	998
BstBI	TTCGAA	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	436, 841
BstDEI	CTNAG	6 cut(s)	680, 687, 959, 1400, 1457, 1734
BstDSI	CCRYGG	1 cut(s)	439
BstF5I	GGATG	8 cut(s)	145, 154, 481, 501, 1102, 1739, 1900, 2077
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	3 cut(s)	769, 883, 2131
BstMAI	GTCTC	6 cut(s)	23, 285, 978, 1543, 2033, 2154
BstMBI	GATC	3 cut(s)	766, 880, 2128
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 667, 1379, 1462
BstNI	CCWGG	6 cut(s)	92, 468, 1384, 1575, 1611, 1647
BstSCI	CCNGG	7 cut(s)	90, 466, 1382, 1412, 1573, 1609, 1645
BstSFI	CTRYAG	1 cut(s)	804
BstV1I	GCAGC	4 cut(s)	46, 1225, 1281, 1366
BstV2I	GAAGAC	1 cut(s)	2148
Bsu36I	CCTNAGG	1 cut(s)	680
BsuI	GTATCC	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	89, 1579
BtgI	CCRYGG	1 cut(s)	439
BtsCI	GGATG	8 cut(s)	145, 154, 481, 501, 1102, 1739, 1900, 2077
BtsIMutI	CAGTG	3 cut(s)	20, 391, 2042
BveI	ACCTGC	2 cut(s)	1012, 1981
Cac8I	GCNNGC	2 cut(s)	436, 841
CciI	TCATGA	1 cut(s)	769
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	4 cut(s)	88, 949, 1024, 1577
Csp6I	GTAC	9 cut(s)	167, 479, 999, 1272, 1542, 1808, 1930, 2105, 2171
CviAII	CATG	8 cut(s)	553, 707, 770, 860, 910, 1021, 1835, 2136
CviQI	GTAC	9 cut(s)	167, 479, 999, 1272, 1542, 1808, 1930, 2105, 2171
DdeI	CTNAG	6 cut(s)	680, 687, 959, 1400, 1457, 1734
DpnI	GATC	3 cut(s)	768, 882, 2130
DpnII	GATC	3 cut(s)	766, 880, 2128
DraIII	CACNNNGTG	1 cut(s)	244
DrdI	GACNNNNNNGTC	1 cut(s)	2150
DriI	GACNNNNNGTC	1 cut(s)	682
DseDI	GACNNNNNNGTC	1 cut(s)	2150
Eam1104I	CTCTTC	5 cut(s)	726, 1008, 1077, 1472, 1752
Eam1105I	GACNNNNNGTC	1 cut(s)	682
EarI	CTCTTC	5 cut(s)	726, 1008, 1077, 1472, 1752
Eco24I	GRGCYC	3 cut(s)	372, 738, 1703
Eco31I	GGTCTC	2 cut(s)	978, 1543
Eco47I	GGWCC	2 cut(s)	949, 1024
Eco57I	CTGAAG	3 cut(s)	396, 654, 1515
Eco81I	CCTNAGG	1 cut(s)	680
EcoRI	GAATTC	2 cut(s)	825, 1943
EcoRII	CCWGG	6 cut(s)	90, 466, 1382, 1573, 1609, 1645
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	3 cut(s)	372, 738, 1703
FaeI	CATG	8 cut(s)	556, 710, 773, 863, 913, 1024, 1838, 2139
FatI	CATG	8 cut(s)	552, 706, 769, 859, 909, 1020, 1834, 2135
FauNDI	CATATG	2 cut(s)	50, 1075
Fnu4HI	GCNGC	4 cut(s)	60, 1239, 1295, 1380
FokI	GGATG	8 cut(s)	152, 161, 488, 508, 1109, 1726, 1907, 2084
FriOI	GRGCYC	3 cut(s)	372, 738, 1703
Fsp4HI	GCNGC	4 cut(s)	60, 1239, 1295, 1380
FspBI	CTAG	5 cut(s)	170, 647, 1251, 1440, 1520
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	4 cut(s)	60, 1239, 1295, 1380
GsuI	CTGGAG	1 cut(s)	1494
HaeIII	GGCC	2 cut(s)	89, 1579
HapII	CCGG	3 cut(s)	617, 1414, 1743
HhaI	GCGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	8 cut(s)	556, 710, 773, 863, 913, 1024, 1838, 2139
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	2 cut(s)	1882, 2155
HindII	GTYRAC	2 cut(s)	1882, 2155
HindIII	AAGCTT	2 cut(s)	668, 1782
HinfI	GANTC	7 cut(s)	320, 559, 643, 1087, 1126, 1169, 1487
HpaI	GTTAAC	1 cut(s)	1882
HpaII	CCGG	3 cut(s)	617, 1414, 1743
HphI	GGTGA	5 cut(s)	773, 875, 887, 1738, 2108
Hpy166II	GTNNAC	5 cut(s)	550, 1001, 1882, 1981, 2155
Hpy188I	TCNGA	7 cut(s)	688, 702, 919, 1174, 1450, 1795, 1999
Hpy8I	GTNNAC	5 cut(s)	550, 1001, 1882, 1981, 2155
Hpy99I	CGWCG	1 cut(s)	526
HpyAV	CCTTC	9 cut(s)	79, 130, 188, 280, 861, 1228, 1670, 1740, 1994
HpyCH4III	ACNGT	2 cut(s)	15, 1306
HpyCH4IV	ACGT	1 cut(s)	521
HpyCH4V	TGCA	8 cut(s)	158, 356, 913, 1643, 1925, 1936, 1990, 2024
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 667, 1379, 1462
HpyF3I	CTNAG	6 cut(s)	680, 687, 959, 1400, 1457, 1734
HpySE526I	ACGT	1 cut(s)	521
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	8 cut(s)	556, 710, 773, 863, 913, 1024, 1838, 2139
HspAI	GCGC	1 cut(s)	311
Kpn2I	TCCGGA	2 cut(s)	616, 1742
KspAI	GTTAAC	1 cut(s)	1882
Kzo9I	GATC	3 cut(s)	766, 880, 2128
LguI	GCTCTTC	3 cut(s)	726, 1472, 1752
LmnI	GCTCC	8 cut(s)	50, 375, 533, 784, 802, 1453, 1714, 2121
Lsp1109I	GCAGC	4 cut(s)	46, 1225, 1281, 1366
LweI	GCATC	2 cut(s)	343, 1318
MaeI	CTAG	5 cut(s)	170, 647, 1251, 1440, 1520
MaeII	ACGT	1 cut(s)	521
MaeIII	GTNAC	8 cut(s)	325, 862, 937, 1040, 1113, 1186, 1334, 2096
MalI	GATC	3 cut(s)	768, 882, 2130
MboI	GATC	3 cut(s)	766, 880, 2128
MhlI	GDGCHC	3 cut(s)	372, 738, 1703
MlyI	GAGTC	1 cut(s)	314
Mph1103I	ATGCAT	1 cut(s)	358
MroI	TCCGGA	2 cut(s)	616, 1742
MroXI	GAANNNNTTC	3 cut(s)	669, 1168, 1682
MseI	TTAA	5 cut(s)	515, 1046, 1202, 1881, 2182
MslI	CAYNNNNRTG	1 cut(s)	1095
MspI	CCGG	3 cut(s)	617, 1414, 1743
MspR9I	CCNGG	7 cut(s)	92, 468, 1384, 1414, 1575, 1611, 1647
MvaI	CCWGG	6 cut(s)	92, 468, 1384, 1575, 1611, 1647
MwoI	GCNNNNNNNGC	4 cut(s)	95, 667, 1379, 1462
NciI	CCSGG	1 cut(s)	1414
NdeI	CATATG	2 cut(s)	50, 1075
NdeII	GATC	3 cut(s)	766, 880, 2128
NlaIII	CATG	8 cut(s)	556, 710, 773, 863, 913, 1024, 1838, 2139
NmuCI	GTSAC	3 cut(s)	1040, 1334, 2096
NsiI	ATGCAT	1 cut(s)	358
NspV	TTCGAA	1 cut(s)	196
PagI	TCATGA	1 cut(s)	769
PaqCI	CACCTGC	1 cut(s)	1012
PciSI	GCTCTTC	3 cut(s)	726, 1472, 1752
PdmI	GAANNNNTTC	3 cut(s)	669, 1168, 1682
PfeI	GAWTC	6 cut(s)	559, 643, 1087, 1126, 1169, 1487
PfoI	TCCNGGA	1 cut(s)	1412
PkrI	GCNGC	4 cut(s)	61, 1240, 1296, 1381
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp6I	CCWGG	6 cut(s)	90, 466, 1382, 1573, 1609, 1645
PspGI	CCWGG	6 cut(s)	90, 466, 1382, 1573, 1609, 1645
PspPI	GGNCC	4 cut(s)	88, 949, 1024, 1577
PsrI	GAACNNNNNNTAC	2 cut(s)	1419, 1451
RsaI	GTAC	9 cut(s)	168, 480, 1000, 1273, 1543, 1809, 1931, 2106, 2172
RsaNI	GTAC	9 cut(s)	167, 479, 999, 1272, 1542, 1808, 1930, 2105, 2171
RseI	CAYNNNNRTG	1 cut(s)	1095
SapI	GCTCTTC	3 cut(s)	726, 1472, 1752
SaqAI	TTAA	5 cut(s)	515, 1046, 1202, 1881, 2182
SatI	GCNGC	4 cut(s)	60, 1239, 1295, 1380
Sau3AI	GATC	3 cut(s)	766, 880, 2128
Sau96I	GGNCC	4 cut(s)	88, 949, 1024, 1577
ScaI	AGTACT	1 cut(s)	1543
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	7 cut(s)	92, 468, 1384, 1414, 1575, 1611, 1647
SduI	GDGCHC	3 cut(s)	372, 738, 1703
SfaNI	GCATC	2 cut(s)	343, 1318
SfcI	CTRYAG	1 cut(s)	804
SfuI	TTCGAA	1 cut(s)	196
SinI	GGWCC	2 cut(s)	949, 1024
SmiMI	CAYNNNNRTG	1 cut(s)	1095
SmlI	CTYRAG	6 cut(s)	80, 564, 582, 1008, 1589, 1625
SmoI	CTYRAG	6 cut(s)	80, 564, 582, 1008, 1589, 1625
SspMI	CTAG	5 cut(s)	170, 647, 1251, 1440, 1520
StyD4I	CCNGG	7 cut(s)	90, 466, 1382, 1412, 1573, 1609, 1645
TaaI	ACNGT	2 cut(s)	15, 1306
TaiI	ACGT	1 cut(s)	524
TaqI	TCGA	4 cut(s)	196, 524, 895, 1963
TatI	WGTACW	4 cut(s)	478, 998, 1541, 2104
TfiI	GAWTC	6 cut(s)	559, 643, 1087, 1126, 1169, 1487
Tru1I	TTAA	5 cut(s)	515, 1046, 1202, 1881, 2182
Tru9I	TTAA	5 cut(s)	515, 1046, 1202, 1881, 2182
TscAI	CASTG	3 cut(s)	20, 391, 2049
TseFI	GTSAC	3 cut(s)	1040, 1334, 2096
TseI	GCWGC	4 cut(s)	59, 1238, 1294, 1379
Tsp45I	GTSAC	3 cut(s)	1040, 1334, 2096
TspDTI	ATGAA	9 cut(s)	423, 474, 723, 786, 1062, 1296, 1691, 1791, 2100
TspGWI	ACGGA	1 cut(s)	2099
TspRI	CASTG	3 cut(s)	20, 391, 2049
VpaK11BI	GGWCC	2 cut(s)	949, 1024
XapI	RAATTY	5 cut(s)	129, 425, 825, 1417, 1943
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XmnI	GAANNNNTTC	3 cut(s)	669, 1168, 1682
XspI	CTAG	5 cut(s)	170, 647, 1251, 1440, 1520
ZraI	GACGTC	1 cut(s)	522
ZrmI	AGTACT	1 cut(s)	1543
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.